TCONS_00063467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063467
Unique NameTCONS_00063467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063467 ID=TCONS_00063467|Name=TCONS_00063467|organism=Clytia hemisphaerica|type=transcript|length=1662bp
CTACACTGTAGTTCGACCGAAGCAACCTCCACAGTAAAGCAGCAAAGTCA
GCTCCGAATATAATCTCAGGTCTGTAAATTGTTATACGGCAGCGCTAAAG
CATGTCAAAAAGACAAAGGTAGACACGAGAAGTCAGCCGGCGAACAGCGA
AGAAGTGAGTACTGTACAGCTAGAAAATACTCAGAAGACTTGAGAAACAA
TGGCTGAATATCTAGCTTCCATTTTTGGAACAGAGAAAGATAAGGTCAAT
TGCTCCTTCTATTTCAAGATTGGTGCTTGTCGTCATGGAGACAAATGTTC
AAGGCTCCACAATAAACCTACTTTTAGTCAGACAATACTATTGCAAAACA
TGTATCAAAATCCTCAAAACCAAGCCACAAATCCTGATGGAATGCCTGTA
ACTACTGCAGCTGCTGCTGCGCACATCATGAGTGATGTAGAAGCACAGGA
ACATTATGATAGCTTCTTTGAAGATGTTTTCCTTGAACTCGAAGAAAAGT
ACGGCGAGATTGAAGAGATGAATGTTTGCGACAACTTGGGTGATCACTTG
GTTGGTAATGTTTATGTTAAGTTCCGCTATGAGGAGGATGCAGAGAAAGC
TTCCAATCAAGTTAACAATAGATGGTACAATGGTCAGCCAATTTATGCAG
AATTATCCCCAGTCACTGATTTCAGGGAATCTTGCTGCCGTCAATATGAA
ATGGGtgaATGCACTCGTGGtggattttgtaattttatgcACTTGAAACC
AATTTCAAGAGAACTCAGGCGAAGATTGTACGGCCGACGACGTGGTGGTG
CCGGTGTAGGTGGTGGTGCTTCTTCGGGACCCCTCGTTCGAAGAGGAAGA
TCACGCTCATTTTCACCCTCACCTCCACGAAGAAAATCAAGATCTCGTTC
ACCTAAAAGGAGATCACCAAGGCGCAGAAGATCCAGAAGTCCACGTTAGA
CATGCAGCGCTAACCAACTAACTTTCACTTTACCATTTATAATATGGCAA
CAGAGATTTGAACTTACTTAAAAGTCACTGACTGTTTGGCTCTTTAACAT
CAGTTTCAACAACGTATCACTTGCATTTAGTTTTTCACAGTCTTGCAAGC
TTATTTGTATACTTGACCAATTAGCTTTGTATTATTTTATAGAATTTTGC
TGGTGACTATTTAGCTCATTTAATTCGACGTTATACTCTGAATTTGGGTC
TATTCCTCATATTGGTGGGCTATTTTACTTGTAAAAATTTTTAACCTCTT
TTTATATTGCAAAAGATGCTTTGAAATAAATTGGATGGTTCTGTCGTCAG
TTTTGTGAAAACCTTTATAGCGTTGtcttttctttagatttttatcCTAT
TCGATACCGCTCTTTTTGTACATGTCATATCACACTCCCAAACTCTATCC
GAATTTTCTTCCCTATTCTTATTCACTATGATTCTTTGATAAGTTTGACT
TGAAAGAGCTTTTATGCATTCATTTTTGATAAACCATTTCTGAAAAAGCT
AACTCAACAGTTTACAACGATGGTGTAATCTACAGATAAACGTTATCATg
attttgatatatcaaaatcAGTCCTTTGAgtgactttcgagggtgtgaaa
aagggaccctaatggcacccggcacccattttgccgtAAGTACCCCCTGG
ATGTCATTGAAT
Run BLAST on NCBI

protein sequence of TCONS_00063467-protein

>TCONS_00063467-protein ID=TCONS_00063467-protein|Name=TCONS_00063467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MAEYLASIFGTEKDKVNCSFYFKIGACRHGDKCSRLHNKPTFSQTILLQN
MYQNPQNQATNPDGMPVTTAAAAAHIMSDVEAQEHYDSFFEDVFLELEEK
YGEIEEMNVCDNLGDHLVGNVYVKFRYEEDAEKASNQVNNRWYNGQPIYA
ELSPVTDFRESCCRQYEMGECTRGGFCNFMHLKPISRELRRRLYGRRRGG
AGVGGGASSGPLVRRGRSRSFSPSPPRRKSRSRSPKRRSPRRRRSRSPR
Run BLAST on NCBI

transcript from alignment at scaffold_39:151552..165072-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063467 ID=TCONS_00063467|Name=TCONS_00063467|organism=Clytia hemisphaerica|type=transcript|length=13521bp|location=Sequence derived from alignment at scaffold_39:151552..165072- (Clytia hemisphaerica)
CTACACTGTAGTTCGACCGAAGCAACCTCCACAGTAAAGCAGCAAAGTCA
GCTCCGAATATAATCTCAGGTCTGTAAATTGTTATACGGCAGCGCTAAAG
CATGTCAAAAAGACAAAGGTAGACACGAGAAGTCAGCCGGCGAACAGCGA
AGAAGTGAGTACTGTACAGCTAGAAAATACTCAGAAGACTTGAGAAACAA
TGGCTGAATATCTAGCTTCCATTTTTGGAACAGAGAAAGATAAGTAAGTC
TGAATCTTTTATTTCTTTTCATGAATAGTTTGTTATTTATATGAACATTC
TTCATAGACTATGGCCAGTGAAAGGATAAAGCTTCAAAGAAAAATGCAAA
ATGTCTACGTGACTAACTTTTTAACGACCCTTTTGACGCACCGGACAGTC
CGGTGTGCTTGTCCGGTGCCCANGTGACTAACTTTTTAACAACCCTTTCG
ACGCACCGGACAGTCCAGTGTGCTTGTCCGGTGCCCAAAAGTATCCCTCA
GCCACACTGGAAACCTTTGGTCCAATGTTAATTTTTCGAACTTCTGGACA
CCAGACAAAGTTTGTTTTGAAAATAATGTTCACACCTCGGACGCACCGAA
CGGTGTTGAGATTGTCCGGTGTTAAAAAGTATCCTCATCCAACACTGGAC
TTTGTGTGTCCGGTGCGTCGGCAGGGGCGTACTTTTTAATATGTGTCAAT
TTTACTACGACCCTGCCTATGCCCCGGACAGTCCAGGGTTTTTTTGATGC
GTGCCCGGGGTCCGTATTTGTTTTTGAGAGACTACCCCGGACGCCCCAGA
CAGCCCGTGCGGTCGCTTTTTATAGAATCGCTGACCGCGCGGGCTTTTTT
CTAATTCATTGAAATATTCTTCCGTGGACAAACGCCGTCTTCCAAAAGAT
CTTGTNGACCGCGCGGGCTTTTTTCTAATTCATTGAAATATTCTTCCGGG
GTAAATTTAATGGCGCAAAAATTGGAGCCCCGGACATAGGTCCGGGGAAA
AAGTTATTTTTTTCAGACCCCAGACATTTGCCCCCGACTGTCCGGGGCAT
AGGCAGGGTCGTATTTTAGTCAATTTGAAGTTGCTGGATCCAGTATTTTT
TTAATGTCAACAAGCTTGAAAACCTGGAGTTTTTGCGTAAACTAAAAAAG
CAACTATACCACTGATGATAGCAGCCAGAAAGTGGCAATACACCTTTCCC
GTAATTCAAATTTCCCGGGAAAAAATGTGTGCTCCACTGTTGACTGTTGT
GTGTAAAATTCTTTGGGAGGTAAACCAACACGTTTTTGCCTGCAAGGGGT
TTGGGCAAGTGCTGGCAAGTGGGTTTTAAGCTTCTAACTTTTGATAGTGA
TCTTTTAGGCAGTTAGTCACACTAGCGTCCCGCCAAAATGCGTATCAAAG
ATTAATGCAACGAAAGCGCTATATCGTTTACTTGACTCTCAAGCAAAAAA
ATGCGCCGCAAAACTTCTAAAGGGATTCATGAAAAAATAACCCGCCGATC
ATGTTCAAAAATAGTGTGACATTTACTGAACTCAAAAATTGACAAAAATA
TAGTATTTCTTGAATAACTTGAAAAATATTTCAAATATAACGTTGAAATT
TTATATGATGATCGGTATTTAAAGAAAAGAACATATGTTGATGAAAAAAA
TGGTAAAATGAGTAAAATGTGTGGTTCCAGGTCCAAATATGTCCAAATAT
GTATTTTGTCAGCCACCTCAAAGGAGGAAATGGTTTGTTTGAAAATGACA
CTTGAATCAGTAACTAGAGGTTTCATATTATCTCAAAACAGATAAAAGTG
CAACATTTTGAAACTGGTTGGTTTCAAAAAGCCACCAGTGTTGTCAGCCA
CATAAACGACTCATAGCTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAGGAGAG
TGTCCTACAAGGTTTAGAACCATTGGGAACCAGCTCAACCCTGTATGGAG
CTCAGAATAAGCTTAACTAAGGCTCCAGTACAGCGATGTAGGCTTACAGT
GTAGACCCAGGCGGCTCTGGAGGCCTAAAAACCTGTTTTCTGGCAAAACT
ACTGTTCCCAGCGGGTTCTAAACGCTCAAAATCGCTTCAGCACCATGGAA
ATATACTAATTAGAGCCTTTGGAAGTAGCTCACTTGCTTTCAAGGTTGCG
TTTTTACGTTTTTTGCTTAAAAAAGCCTTAAAAACGCTTAAATAGAGCTT
TTTAAGCATTTTTTAAGCTATTTTAGTGAAAATTTGTCGGTTCTGCCCCC
TTCGCTGGACTTCAATGGGTCTAGTCCATTGCAGGGGAGTGTCCTTCAAG
GTTTATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNTAATACTATTTTCATTCATTTTACCATTTTTCAAAAAAAGACCAAAAA
AGGCTCTGATTTCCTTCCGTGACAGGAACGGGACTTTTCAATTTGGCCCT
CCTGTAGATGACTGATGTTGTTTTTTCTGAAAGCTAGATTTCCTAGTGTG
ACTAACTGTTAGGGTTGTATGATACCGTGTAGTCAGATAGCTTGCATCAG
TGGAGGCAAACATGCATAGCCATCAAATGACTGACCAATCAAGGCAGTAA
AATTTCAAAACAAATGAACCACGCAGCTCCGCTTGCTGCTCTACTCTACC
ATTTTAGAATCTCATATTTGCTGCGCAAGTATTTTTGCCGAGTTACTCAC
GACAGAATCGCGGGTGAATAAAAGAGCATAGTTAGCGGGAATTTAGATGT
TTCTCAATGGCTGCTGGTCGTGTGCTGTAACCTTAAATTTTTGATAATGA
TATCCAGACAATCTCAATTGAACGGAATCGACAATCGAACCAAATCAAAG
TAATCGACCGATTGAAATTCGATTGTCCAACGCAATCGAATCTCATGCGA
ACTTCAAAATTTTGGGTTATATTCGATTGGTTCGATTGTTGTTCGACTGG
TTCGATCGACTGGTTCGATCATCAATTCCGTTCGATTGAGATCGTCTGGC
TTTATTTTTGCAGCTTCCTAACATTCAAGCTCTCAAACATCACAAGCCGA
ATGAAATTACTTTCGATTTCCCGTAGATGAACAATCTGGGGGTCAATGAA
TCGACGATCGAACGCAATCGAACGCAATCGAATATCAATCGAATCTGAAA
ATTGCGGTAATATTCGATTGAGATTCGATTGCGTTCGACAATCGAATTTC
AATCGTTCGATTGCGTTCGATTTGGTTCGACTGGTTCGATCGTCGATTCC
GTTCAATTGAGATCGTCTGGTGATATTAAACATAGTTATGCATGACATCA
CTTATGATTTGGAGATATTTATACATTTTACCACCCGCAAATTTTTTGTA
AATCAGGTTTGTTTTGAAATTTTAATGACNCGACCAAGCGTCTCAAGTTA
GAGCAGTTGACAGTCGAAAGAACATACTAAAATTTGAGGGGAATTTAATC
GACAGAACTTAAGAAAAGCTAAAAAAAACATGTTCCCCTAATGAAACGCA
GGCAAAAACAGGTTTGTTTACCTCCAGAGACCAATCAGTGGAGAGCATCA
AAATAATGCGCGCAGATCTGTTTTGCAAATTACAGGAAAAGTGTATCGAA
CAAGTTTGAACGAAAATCTCAATCGAATGTAATTGTGNAAACGGCGTATT
GAAAAATGTACAATTTCTCTTTCGCACTGAGTAGGCTTTTAAATCGAAAT
ATGAAAAAAATTTGTAGTTGAACACACACGAGTGTCTGGAATGAAGAAGA
ACAGATTACTTTAGGCATACAAACTTTCGCGAGCAGAAACTTTCGCGATT
GTCTTTAAAAATTCTAGGAAGGGCCATTCGCGAAAGTTTATGCTCGCGAA
AAATTCTTGACAAAATAGAAAATCTGTAAAACTTCAAACTTNAAAACATT
TTCTAGAAACCTTTTTTCTTCAAACCCTTTTTGGTTGAGATTTACCGGCA
AACCAAAGATACAGTTTTTCTAAGCATCAGTAATTATTTGAGAGCACAGT
AAAGCCTAAAGTAAAACTAATCTTCAACGAGTAGACTAGTTTGCCCTTTT
TTCTCAAAATCTAGAAAATATGGGTTACTTTATTAGGCAGAGGATATGCA
GAGGATGGTTGTTGCCTAATGCTCGGGTAGGGAAGCCAAAGAAAATTCCT
ACACCATATNTTGGCTTTTTTTAGCCTGCTAAAAGACTAATAAGTCAAAG
GACAAAATGTTTCAAGCCAGTCCAAGAAGTATTTGTCCGTCCAAGCCATT
TTTTCATGTGCAAATTCTCAATTTTACGTCTTGATTCTCAAAAGTTTATG
CTCATGAAAAATCTTTTTCCGTTAAATTCGCGAAAGTAAATGTTGTAAAT
TTCGCAGTTTTATGTCCTCGCGAAAGTCTCTGCCCGCGAAAGTTTCTGCT
CGCGAAAGTTTGTACGCCTAAAGTAGTGGCAAAACGATGGACTGTTTGAC
GTCACTTGTGCGACAAGTTACACACTCGTTATTTGTTAATCCCATTAGGC
GATTAGGCGGCAGGCATTCTCTAATTCTCCAAATCGACGTGGTCCGGTCA
TTTTGAATGAAAACAAAAAAGTTAAAAAGGGCGCGCTATCAGTGAAAGTT
ATCGTGACATGTTATGACAAAAAGTATAATTGATAAACTTGGTGGAGAAC
AAATTTGTTGTCAAAGAGATTTAACAGTAAGTGAAAATACAGGCCAGATA
TCAACAGTTCCATGTTTTGACCAAGCGTCCCAAGTTAGAGCAGTTGACAG
TTGAAAGAACATACTAAAATTTGAGGGGAATTTAATCGACAGAACTTAAG
AAAAGCTAAAAAAAAACATGTTCCCCTAATGAAACGCAGGCAAAAACAGG
TTTGTTTACCTCCAGAGACCAATCAGTGGAGAACATCAAAATAATGCGCG
CAGATCTGTTTTGCAAATTACAGGAAAAGTGTATCGAACAAGTTTGAACG
AAAATCTCAATCGAATGTAATTGTGGTTTAGAGGATAATGTCAATTTGAC
TAAAAATTTGACAAAAACAAGTAAATGATGCGTTTGCTTCTATTTTTCAT
AAAAAGGCATCACTTACTTTTTTTTGTCAGAAAACATTTTCTAGAAACCT
TTTTTCTTCAAACCCTTTTTGGTTGAGATTTACCGGCAAACCAAAGATAC
AGTTTTTCTAAGCATCAGTAATTATTTGAGAGCACAGTAAAGCCTAAAGT
AAAACTAATCTTCAACGAGTAGACTAGTTTGCCCTTTTTTCTCAAAATCT
AGAAAATATGGGTTACTTTATTAGGCAGAGGATATGCAGAGGATGGTTGT
TGCCTAATGCTCGGGTAGGGAAGCCAAAGAAAATTCCTACACCATATTTC
AGTTTTTTCTGATATTTCTACATTGTTTGGTACATTGTAAACTGGTAAAC
TAAACAGTACAAAATTCCAAAAATAGGTTTTTGACATAGTCATAGACCCC
TAATAGATCCGAGATAGTTTGATCATGTAGTAGGGGGAAATTTGTTTGAT
TTTTTGAGATAGCTCGACTTTTTTAGTCAAAGCACTTATTATACATACAA
AAAAGAGACCTGTTGTATATTTTTGGAAAGCTCTCAAAAAATTAAGATTA
GAGATATCAGGCCATTTTTTATGCCCTTTTAGCGTCCGGTTATTGGACGG
TGCCCCTCCTGAAATCGCTAAAATCTTGGTAAAAACAGCCTTTTTAGTGG
AAAAACAGTACAAAAAGTGCCCTTTTTGACAACCAATGGTCGCTGCCCTG
CCTTTCTAAAATATCGTCCAGATATATTACGAGTATAGCTGATTTCTGTA
CCTAACTCCTAAGATATTAAAAATAATGTTTTTCAGCCAGAAACAGCTTA
TTTTGTCCACTTTTTGCATTTTTTGCACTGTCAATGTTTGTATTGCGAGC
AATTTATTTGTTTTAGGGTCAATTGCTCCTTCTATTTCAAGATTGGTGCT
TGTCGTCATGGAGACAAATGTTCAAGGCTCCACAATAAACCTACTTTTAG
TCAGGTAAAGTTTTCATTAGGAAATACTAGCTGCTATAATAAACTCTCTT
ACTTAGAATAAACCTACCTTATTTGAACCTACCATATGTAAAAATAATTT
TATGAACTTTTATCTGTAAGTTGCAGACTGCAAACCTTACACTTAAAATT
TTGAACATTTTATAGAATTTCAGTACAACTATATTCACTCAGGAAATTTG
GGTGGCAGAGCAGGTGTATGTATTTGGTCCTTATAGGGACTCACCAGCAC
TGGGGTACTGCACCTTGCCTGGTAATATGGATTTAGCCCGCATCTCTGAA
CCACAAAACGTTTCTTTTCTCTTTCACAGACAATACTATTGCAAAACATG
TATCAAAATCCTCAAAACCAAGCCACAAATCCTGATGGAATGCCTGTAAC
TACTGCAGCTGCTGCTGGTAAGCTAATTTTTTAATTCATTGGATAATCTG
CGTACTCTTGGGTAAGTGCCTAATAAATTGAGATGTCAAACGAGTTTTTA
ATGGGAAAATGTTTCTTAAGTCATTACCAGTCCCCTAATGACCTGACGGA
GCCGCTAAGGTTTGATAGGTGTATACACCTTTTCGACCATAGCTACCAAT
TGCCGCGCGGGCATTTTTTGTCTTCTTTATCCTGCTAAAACTTTCCCAGT
CCTTTTTTCCCACCAATAGACAATAGAAAAATGAGTCGAAAAAGGATTGG
GACGGTTTTAGTGGGTTAAAGGGGACGAAAGAATGCCCGCGCGACTACTA
CGGTCAAAAATTTGTATTTATCTTACCATATTATAGCTAGATTTGGCTGT
TTTTGCTTGGTTGGACCTTTTTATAAAGTTGGTCATTTTTTCAGAAAATT
GAGAAAGGGTGAGGAATTAACCGTTTTCGAAAATCCAGGGGAGTGCAGAG
CAAAAATTTGCCATACAAATCATCCCTTAATTTTCAGCATGTCTTTATTT
GAGCCCAGTTCCAATTCAAATGTGGCCTTTTATAATACTTCTTTCTTGTT
TCCATTTCAGCGCACATCATGAGTGATGTAGAAGCACAGGAACATTATGA
TAGCTTCTTTGAAGATGTTTTCCTTGAACTCGAAGAAAAGGTTTAGTCTA
TTCTCAAATCTTTTTTAGCTACCCATTCCTTCTTTACCAACAATTTCCTT
CTCATTTCTGAGTTTTGTGTTATTTGGTGAACAGATGATGAATTTTTTTA
GACCCAGAAGCTACCTGATCAGGGGGGGGGGGTCGGTACTAAAATCTCAG
ACATACATGAGTACTAAAAGGATTTTCGCTAATTTTTGACATACCCCCAC
CTATTTTTTCGAAAATNATTGGGACGGTTTTAGTGGGTTAAAGGGGACGA
AAGAATGCCCGCGCGACTACTACGGTCAAAAATTTGTATTTATCTTACCA
TATTATAGCTAGATTTGGCTGTTTTTGATTGGTTGGACCTTTTTATAAAG
TTGGTCATTTTTTCAGAAAATTGAGAAAGGGTGAGGAATTAACCGTTTTC
GAAAATCCAGGGGAGCGCAGAGCAAAAATTTGCCATACAAATCATCCCTT
AATTTTCAGCATGTCTTTATTTCAGCCCAGTTCCAATTCAAATGTGGCCT
TTTATAATACTTCTTTCTTGTTTCCATTTCAGCGCACATCATGAGTGATG
TAGAAGCACAGGAACATTATGATAGCTTCTTTGAAGATGTTTTCCTTGAA
CTCGAAGAAAAGGTTTAGTCTATTCTCAAATCTTTTTTAGCTACCCATTC
CTTCTTTACCAACAATTTCCTTCTCATTTCTGAGTTTTGTGTTATTTGGT
GAACAGATGATGAATTTTTATAGACCCAGAAGCTACCTGATGAATGAATA
ATGAATAAATGAACATGTCAAGGTTACAAAATTCCATTACTGAAATGAAT
TAACAGTTTTTAAATTTGGTTTTCTTTAGCACTTCTTTATTTAGATATAC
GTGCTTCATCCATGTCCCTCATAATATGTTTCTATAGTACGGCGAGATTG
AAGAGATGAATGTTTGCGACAACTTGGGTGATCACTTGGTTGGTAATGTT
TATGTTAAGTTCCGCTATGAGGAGGATGCAGAGAAAGCTTCCAATCAAGT
TAACAATAGATGGTACAATGGTAAGATCTAATCATCTTCTTCGAATTCTT
TTTTAATGACTTCATTGTCACTTCCAATGATCATTGTTTCCTCTTTGGCC
AAGACCATCACCTTGGACAATTAAAAGGAGGATAGATAGCAATCGATGAT
TGATGTGGGAGGGGATCCTTAAACTTTTGATCAGTAATGAAGCGTGCTTT
CACTTCACTGCAGCTCCCTTTAATTCATGAAGTATCGTTTTAAACTGTAG
TGTGGCTACAGAGGATTTTAAACAGAATACCCTGGACTAATCTAATTTCA
TATCTCTTTTGTATTGAAAATATACGCAACTTACCTGCGAATTATAATTG
TCTCTCCATTTCAAATTGTTATTAGGTACACTATTTCTCAGAAAAGAAGA
TTTACTCTTACTACGTTTTATTTTTAGGTCAGCCAATTTATGCAGAATTA
TCCCCAGTCACTGATTTCAGGTATGCCTATTATCGCCTTAATTTGTATTA
CAAAATTTGGAAAGCACAACTATTGTCAGATACTATACTTCGACTTTTTT
AATGATTTCTTTGCTCAGAATTGAAGTTTTTATCATGATCTGCTTATTGC
CAGACACTATTTTTAAGGTATACTTGAAATTGATTTGACATAACATTTCT
TTTTACCAGGGAATCTTGCTGCCGTCAATATGAAATGGGGTAAGAGACTT
TTTCTTTTTCTTTTCTATGCTGACGTTTTTCCACTGTTTGATCAGGTTCG
AACTATATTCAACTTAAAATAGATTAGCCGATATTTTTAATCTAGTCCAT
TTCAGCCGACAAAATACTAACCAGTTAGTTGACTTTATGAAATAAAAAAA
ATAAAAGTGAATGTATTTCTTCTTGTTTCTAATAATTGACACTATAATAC
AGCTGAATATGATTTAAAGTGATTTCTTTTCTTTTTTCAGTGAATGCACT
CGTGGTGGATTTTGTAATTTTATGCACTTGAAACCAATTTCAAGAGAACT
CAGGTGAGAATTACGTTATTTCTGCTGGAAACAAGCCTAAAATTGATATA
GATGGGCAGCTGGTCATTCCATAGATCATAATCAATAAAATGGTATACAT
TAACCATAAATGAGAAAAGGGTTTTCTAAGTTGGGAGTGTCAGTTTTTTC
TAGGTAAGAACCGGTGAAAACTCCCATTCGATTCCTATAATGAGACAAGA
ATACTCAAAAGCTTCTCTATCTTGAAATTTTATAGGCGAAGATTGTACGG
CCGACGACGTGGTGGTGCCGGTGTAGGTGGTGGTGCTTCTTCGGGACCCC
TCGTTCGAAGAGGAAGGTAAAACGATGACTTGTGTTTTCTTTGAAATTCT
CAATTATTGGTTTTTCTCTCAAAAGTGAGAGGTATTTCGTGTTAATAAAT
TGTCTGACTTGATCTCTAGCAGTGCTATCTTTGAATTTTGAGTGTAGTGT
TTCAGTGTTGTACCTCTGGATTTCCGCGTCAAAAGTACATGAAATGAATT
TTATTAGAAATTAAATCTAACTTTTCAGCCTTAAAACTGTTATTTCTAGG
AACTGAATGCAAAAAGTTGTTGATAGAAAGTAACTTTATCACCCTATTTT
CATTTCAGATCACGCTCATTTTCACCCTCACCTCCACGAAGAAAATCAAG
ATCTCGTTCACCTAAAAGGAGATCACCAAGGCGCAGAAGATCCAGAAGTC
CACGTTAGACATGCAGCGCTAACCAACTAACTTTCACTTTACCATTTATA
ATATGGCAACAGAGATTTGAACTTACTTAAAAGTCACTGACTGTTTGGCT
CTTTAACATCAGTTTCAACAACGTATCACTTGCATTTAGTTTTTCACAGT
CTTGCAAGCTTATTTGTATACTTGACCAATTAGCTTTGTATTATTTTATA
GAATTTTGCTGGTGACTATTTAGCTCATTTAATTCGACGTTATACTCTGA
ATTTGGGTCTATTCCTCATATTGGTGGGCTATTTTACTTGTAAAAATTTT
TAACCTCTTTTTATATTGCAAAAGATGCTTTGAAATAAATTGGATGGTTC
TGTCGTCAGTTTTGTGAAAACCTTTATAGCGTTGTCTTTTCTTTAGATTT
TTATCCTATTCGATACCGCTCTTTTTGTACATGTCATATCACACTCCCAA
ACTCTATCCGAATTTTCTTCCCTATTCTTATTCACTATGATTCTTTGATA
AGTTTGACTTGAAAGAGCTTTTATGCATTCATTTTTGATAAACCATTTCT
GAAAAAGCTAACTCAACAGTTTACAACGATGGTGTAATCTACAGATAAAC
GTTATCATGATTTTGATATATCAAAATCAGTCCTTTGAGTGACTTTCGAG
GGTGTGAAAAAGGGACCCTAATGGCACCCGGCACCCATTTTGCCGTAAGT
ACCCCCTGGATGTCATTGAAT

Coding sequence (CDS) from alignment at scaffold_39:151552..165072-

>TCONS_00063467 ID=TCONS_00063467|Name=TCONS_00063467|organism=Clytia hemisphaerica|type=CDS|length=7500bp|location=Sequence derived from alignment at scaffold_39:151552..165072- (Clytia hemisphaerica)
ATCACGCTCATTTTCACCCTCACCTCCACGAAGAAAATCAAGATCTCGTT
CACCTAAAAGGAGATCACCAAGGCGCAGAAGATCCAGAAGTCCACGTTAG
GCGAAGATTGTACGGCCGACGACGTGGTGGTGCCGGTGTAGGTGGTGGTG
CTTCTTCGGGACCCCTCGTTCGAAGAGGAAGTGAATGCACTCGTGGTGGA
TTTTGTAATTTTATGCACTTGAAACCAATTTCAAGAGAACTCAGGGAATC
TTGCTGCCGTCAATATGAAATGGGGTCAGCCAATTTATGCAGAATTATCC
CCAGTCACTGATTTCAGTACGGCGAGATTGAAGAGATGAATGTTTGCGAC
AACTTGGGTGATCACTTGGTTGGTAATGTTTATGTTAAGTTCCGCTATGA
GGAGGATGCAGAGAAAGCTTCCAATCAAGTTAACAATAGATGGTACAATG
CGCACATCATGAGTGATGTAGAAGCACAGGAACATTATGATAGCTTCTTT
GAAGATGTTTTCCTTGAACTCGAAGAAAAGACAATACTATTGCAAAACAT
GTATCAAAATCCTCAAAACCAAGCCACAAATCCTGATGGAATGCCTGTAA
CTACTGCAGCTGCTGCTGGGTCAATTGCTCCTTCTATTTCAAGATTGGTG
CTTGTCGTCATGGAGACAAATGTTCAAGGCTCCACAATAAACCTACTTTT
AGTCAGATGGCTGAATATCTAGCTTCCATTTTTGGAACAGAGAAAGATAA
ATCACGCTCATTTTCACCCTCACCTCCACGAAGAAAATCAAGATCTCGTT
CACCTAAAAGGAGATCACCAAGGCGCAGAAGATCCAGAAGTCCACGTTAG
GCGAAGATTGTACGGCCGACGACGTGGTGGTGCCGGTGTAGGTGGTGGTG
CTTCTTCGGGACCCCTCGTTCGAAGAGGAAGTGAATGCACTCGTGGTGGA
TTTTGTAATTTTATGCACTTGAAACCAATTTCAAGAGAACTCAGGGAATC
TTGCTGCCGTCAATATGAAATGGGGTCAGCCAATTTATGCAGAATTATCC
CCAGTCACTGATTTCAGTACGGCGAGATTGAAGAGATGAATGTTTGCGAC
AACTTGGGTGATCACTTGGTTGGTAATGTTTATGTTAAGTTCCGCTATGA
GGAGGATGCAGAGAAAGCTTCCAATCAAGTTAACAATAGATGGTACAATG
CGCACATCATGAGTGATGTAGAAGCACAGGAACATTATGATAGCTTCTTT
GAAGATGTTTTCCTTGAACTCGAAGAAAAGACAATACTATTGCAAAACAT
GTATCAAAATCCTCAAAACCAAGCCACAAATCCTGATGGAATGCCTGTAA
CTACTGCAGCTGCTGCTGGGTCAATTGCTCCTTCTATTTCAAGATTGGTG
CTTGTCGTCATGGAGACAAATGTTCAAGGCTCCACAATAAACCTACTTTT
AGTCAGATGGCTGAATATCTAGCTTCCATTTTTGGAACAGAGAAAGATAA
ATCACGCTCATTTTCACCCTCACCTCCACGAAGAAAATCAAGATCTCGTT
CACCTAAAAGGAGATCACCAAGGCGCAGAAGATCCAGAAGTCCACGTTAG
GCGAAGATTGTACGGCCGACGACGTGGTGGTGCCGGTGTAGGTGGTGGTG
CTTCTTCGGGACCCCTCGTTCGAAGAGGAAGTGAATGCACTCGTGGTGGA
TTTTGTAATTTTATGCACTTGAAACCAATTTCAAGAGAACTCAGGGAATC
TTGCTGCCGTCAATATGAAATGGGGTCAGCCAATTTATGCAGAATTATCC
CCAGTCACTGATTTCAGTACGGCGAGATTGAAGAGATGAATGTTTGCGAC
AACTTGGGTGATCACTTGGTTGGTAATGTTTATGTTAAGTTCCGCTATGA
GGAGGATGCAGAGAAAGCTTCCAATCAAGTTAACAATAGATGGTACAATG
CGCACATCATGAGTGATGTAGAAGCACAGGAACATTATGATAGCTTCTTT
GAAGATGTTTTCCTTGAACTCGAAGAAAAGACAATACTATTGCAAAACAT
GTATCAAAATCCTCAAAACCAAGCCACAAATCCTGATGGAATGCCTGTAA
CTACTGCAGCTGCTGCTGGGTCAATTGCTCCTTCTATTTCAAGATTGGTG
CTTGTCGTCATGGAGACAAATGTTCAAGGCTCCACAATAAACCTACTTTT
AGTCAGATGGCTGAATATCTAGCTTCCATTTTTGGAACAGAGAAAGATAA
ATCACGCTCATTTTCACCCTCACCTCCACGAAGAAAATCAAGATCTCGTT
CACCTAAAAGGAGATCACCAAGGCGCAGAAGATCCAGAAGTCCACGTTAG
GCGAAGATTGTACGGCCGACGACGTGGTGGTGCCGGTGTAGGTGGTGGTG
CTTCTTCGGGACCCCTCGTTCGAAGAGGAAGTGAATGCACTCGTGGTGGA
TTTTGTAATTTTATGCACTTGAAACCAATTTCAAGAGAACTCAGGGAATC
TTGCTGCCGTCAATATGAAATGGGGTCAGCCAATTTATGCAGAATTATCC
CCAGTCACTGATTTCAGTACGGCGAGATTGAAGAGATGAATGTTTGCGAC
AACTTGGGTGATCACTTGGTTGGTAATGTTTATGTTAAGTTCCGCTATGA
GGAGGATGCAGAGAAAGCTTCCAATCAAGTTAACAATAGATGGTACAATG
CGCACATCATGAGTGATGTAGAAGCACAGGAACATTATGATAGCTTCTTT
GAAGATGTTTTCCTTGAACTCGAAGAAAAGACAATACTATTGCAAAACAT
GTATCAAAATCCTCAAAACCAAGCCACAAATCCTGATGGAATGCCTGTAA
CTACTGCAGCTGCTGCTGGGTCAATTGCTCCTTCTATTTCAAGATTGGTG
CTTGTCGTCATGGAGACAAATGTTCAAGGCTCCACAATAAACCTACTTTT
AGTCAGATGGCTGAATATCTAGCTTCCATTTTTGGAACAGAGAAAGATAA
ATCACGCTCATTTTCACCCTCACCTCCACGAAGAAAATCAAGATCTCGTT
CACCTAAAAGGAGATCACCAAGGCGCAGAAGATCCAGAAGTCCACGTTAG
GCGAAGATTGTACGGCCGACGACGTGGTGGTGCCGGTGTAGGTGGTGGTG
CTTCTTCGGGACCCCTCGTTCGAAGAGGAAGTGAATGCACTCGTGGTGGA
TTTTGTAATTTTATGCACTTGAAACCAATTTCAAGAGAACTCAGGGAATC
TTGCTGCCGTCAATATGAAATGGGGTCAGCCAATTTATGCAGAATTATCC
CCAGTCACTGATTTCAGTACGGCGAGATTGAAGAGATGAATGTTTGCGAC
AACTTGGGTGATCACTTGGTTGGTAATGTTTATGTTAAGTTCCGCTATGA
GGAGGATGCAGAGAAAGCTTCCAATCAAGTTAACAATAGATGGTACAATG
CGCACATCATGAGTGATGTAGAAGCACAGGAACATTATGATAGCTTCTTT
GAAGATGTTTTCCTTGAACTCGAAGAAAAGACAATACTATTGCAAAACAT
GTATCAAAATCCTCAAAACCAAGCCACAAATCCTGATGGAATGCCTGTAA
CTACTGCAGCTGCTGCTGGGTCAATTGCTCCTTCTATTTCAAGATTGGTG
CTTGTCGTCATGGAGACAAATGTTCAAGGCTCCACAATAAACCTACTTTT
AGTCAGATGGCTGAATATCTAGCTTCCATTTTTGGAACAGAGAAAGATAA
ATCACGCTCATTTTCACCCTCACCTCCACGAAGAAAATCAAGATCTCGTT
CACCTAAAAGGAGATCACCAAGGCGCAGAAGATCCAGAAGTCCACGTTAG
GCGAAGATTGTACGGCCGACGACGTGGTGGTGCCGGTGTAGGTGGTGGTG
CTTCTTCGGGACCCCTCGTTCGAAGAGGAAGTGAATGCACTCGTGGTGGA
TTTTGTAATTTTATGCACTTGAAACCAATTTCAAGAGAACTCAGGGAATC
TTGCTGCCGTCAATATGAAATGGGGTCAGCCAATTTATGCAGAATTATCC
CCAGTCACTGATTTCAGTACGGCGAGATTGAAGAGATGAATGTTTGCGAC
AACTTGGGTGATCACTTGGTTGGTAATGTTTATGTTAAGTTCCGCTATGA
GGAGGATGCAGAGAAAGCTTCCAATCAAGTTAACAATAGATGGTACAATG
CGCACATCATGAGTGATGTAGAAGCACAGGAACATTATGATAGCTTCTTT
GAAGATGTTTTCCTTGAACTCGAAGAAAAGACAATACTATTGCAAAACAT
GTATCAAAATCCTCAAAACCAAGCCACAAATCCTGATGGAATGCCTGTAA
CTACTGCAGCTGCTGCTGGGTCAATTGCTCCTTCTATTTCAAGATTGGTG
CTTGTCGTCATGGAGACAAATGTTCAAGGCTCCACAATAAACCTACTTTT
AGTCAGATGGCTGAATATCTAGCTTCCATTTTTGGAACAGAGAAAGATAA
ATCACGCTCATTTTCACCCTCACCTCCACGAAGAAAATCAAGATCTCGTT
CACCTAAAAGGAGATCACCAAGGCGCAGAAGATCCAGAAGTCCACGTTAG
GCGAAGATTGTACGGCCGACGACGTGGTGGTGCCGGTGTAGGTGGTGGTG
CTTCTTCGGGACCCCTCGTTCGAAGAGGAAGTGAATGCACTCGTGGTGGA
TTTTGTAATTTTATGCACTTGAAACCAATTTCAAGAGAACTCAGGGAATC
TTGCTGCCGTCAATATGAAATGGGGTCAGCCAATTTATGCAGAATTATCC
CCAGTCACTGATTTCAGTACGGCGAGATTGAAGAGATGAATGTTTGCGAC
AACTTGGGTGATCACTTGGTTGGTAATGTTTATGTTAAGTTCCGCTATGA
GGAGGATGCAGAGAAAGCTTCCAATCAAGTTAACAATAGATGGTACAATG
CGCACATCATGAGTGATGTAGAAGCACAGGAACATTATGATAGCTTCTTT
GAAGATGTTTTCCTTGAACTCGAAGAAAAGACAATACTATTGCAAAACAT
GTATCAAAATCCTCAAAACCAAGCCACAAATCCTGATGGAATGCCTGTAA
CTACTGCAGCTGCTGCTGGGTCAATTGCTCCTTCTATTTCAAGATTGGTG
CTTGTCGTCATGGAGACAAATGTTCAAGGCTCCACAATAAACCTACTTTT
AGTCAGATGGCTGAATATCTAGCTTCCATTTTTGGAACAGAGAAAGATAA
ATCACGCTCATTTTCACCCTCACCTCCACGAAGAAAATCAAGATCTCGTT
CACCTAAAAGGAGATCACCAAGGCGCAGAAGATCCAGAAGTCCACGTTAG
GCGAAGATTGTACGGCCGACGACGTGGTGGTGCCGGTGTAGGTGGTGGTG
CTTCTTCGGGACCCCTCGTTCGAAGAGGAAGTGAATGCACTCGTGGTGGA
TTTTGTAATTTTATGCACTTGAAACCAATTTCAAGAGAACTCAGGGAATC
TTGCTGCCGTCAATATGAAATGGGGTCAGCCAATTTATGCAGAATTATCC
CCAGTCACTGATTTCAGTACGGCGAGATTGAAGAGATGAATGTTTGCGAC
AACTTGGGTGATCACTTGGTTGGTAATGTTTATGTTAAGTTCCGCTATGA
GGAGGATGCAGAGAAAGCTTCCAATCAAGTTAACAATAGATGGTACAATG
CGCACATCATGAGTGATGTAGAAGCACAGGAACATTATGATAGCTTCTTT
GAAGATGTTTTCCTTGAACTCGAAGAAAAGACAATACTATTGCAAAACAT
GTATCAAAATCCTCAAAACCAAGCCACAAATCCTGATGGAATGCCTGTAA
CTACTGCAGCTGCTGCTGGGTCAATTGCTCCTTCTATTTCAAGATTGGTG
CTTGTCGTCATGGAGACAAATGTTCAAGGCTCCACAATAAACCTACTTTT
AGTCAGATGGCTGAATATCTAGCTTCCATTTTTGGAACAGAGAAAGATAA
ATCACGCTCATTTTCACCCTCACCTCCACGAAGAAAATCAAGATCTCGTT
CACCTAAAAGGAGATCACCAAGGCGCAGAAGATCCAGAAGTCCACGTTAG
GCGAAGATTGTACGGCCGACGACGTGGTGGTGCCGGTGTAGGTGGTGGTG
CTTCTTCGGGACCCCTCGTTCGAAGAGGAAGTGAATGCACTCGTGGTGGA
TTTTGTAATTTTATGCACTTGAAACCAATTTCAAGAGAACTCAGGGAATC
TTGCTGCCGTCAATATGAAATGGGGTCAGCCAATTTATGCAGAATTATCC
CCAGTCACTGATTTCAGTACGGCGAGATTGAAGAGATGAATGTTTGCGAC
AACTTGGGTGATCACTTGGTTGGTAATGTTTATGTTAAGTTCCGCTATGA
GGAGGATGCAGAGAAAGCTTCCAATCAAGTTAACAATAGATGGTACAATG
CGCACATCATGAGTGATGTAGAAGCACAGGAACATTATGATAGCTTCTTT
GAAGATGTTTTCCTTGAACTCGAAGAAAAGACAATACTATTGCAAAACAT
GTATCAAAATCCTCAAAACCAAGCCACAAATCCTGATGGAATGCCTGTAA
CTACTGCAGCTGCTGCTGGGTCAATTGCTCCTTCTATTTCAAGATTGGTG
CTTGTCGTCATGGAGACAAATGTTCAAGGCTCCACAATAAACCTACTTTT
AGTCAGATGGCTGAATATCTAGCTTCCATTTTTGGAACAGAGAAAGATAA
ATCACGCTCATTTTCACCCTCACCTCCACGAAGAAAATCAAGATCTCGTT
CACCTAAAAGGAGATCACCAAGGCGCAGAAGATCCAGAAGTCCACGTTAG
GCGAAGATTGTACGGCCGACGACGTGGTGGTGCCGGTGTAGGTGGTGGTG
CTTCTTCGGGACCCCTCGTTCGAAGAGGAAGTGAATGCACTCGTGGTGGA
TTTTGTAATTTTATGCACTTGAAACCAATTTCAAGAGAACTCAGGGAATC
TTGCTGCCGTCAATATGAAATGGGGTCAGCCAATTTATGCAGAATTATCC
CCAGTCACTGATTTCAGTACGGCGAGATTGAAGAGATGAATGTTTGCGAC
AACTTGGGTGATCACTTGGTTGGTAATGTTTATGTTAAGTTCCGCTATGA
GGAGGATGCAGAGAAAGCTTCCAATCAAGTTAACAATAGATGGTACAATG
CGCACATCATGAGTGATGTAGAAGCACAGGAACATTATGATAGCTTCTTT
GAAGATGTTTTCCTTGAACTCGAAGAAAAGACAATACTATTGCAAAACAT
GTATCAAAATCCTCAAAACCAAGCCACAAATCCTGATGGAATGCCTGTAA
CTACTGCAGCTGCTGCTGGGTCAATTGCTCCTTCTATTTCAAGATTGGTG
CTTGTCGTCATGGAGACAAATGTTCAAGGCTCCACAATAAACCTACTTTT
AGTCAGATGGCTGAATATCTAGCTTCCATTTTTGGAACAGAGAAAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039777XLOC_039777Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063467-proteinTCONS_00063467-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063467-exon-scaffold_39-1575043694:164830..165072TCONS_00063467-exon-scaffold_39-1575043694:164830..165072Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1575043694:156069..156156TCONS_00063467-exon-scaffold_39-1575043694:156069..156156Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1575043694:155656..155743TCONS_00063467-exon-scaffold_39-1575043694:155656..155743Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1575043694:154983..155062TCONS_00063467-exon-scaffold_39-1575043694:154983..155062Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1575043694:153953..154085TCONS_00063467-exon-scaffold_39-1575043694:153953..154085Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1575043694:153503..153545TCONS_00063467-exon-scaffold_39-1575043694:153503..153545Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1575043694:153284..153313TCONS_00063467-exon-scaffold_39-1575043694:153284..153313Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1575043694:152970..153032TCONS_00063467-exon-scaffold_39-1575043694:152970..153032Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1575043694:152657..152737TCONS_00063467-exon-scaffold_39-1575043694:152657..152737Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1575043694:151552..152364TCONS_00063467-exon-scaffold_39-1575043694:151552..152364Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1510915933:164830..165072TCONS_00063467-exon-scaffold_39-1510915933:164830..165072Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1510915933:156069..156156TCONS_00063467-exon-scaffold_39-1510915933:156069..156156Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1510915933:155656..155743TCONS_00063467-exon-scaffold_39-1510915933:155656..155743Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1510915933:154983..155062TCONS_00063467-exon-scaffold_39-1510915933:154983..155062Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1510915933:153953..154085TCONS_00063467-exon-scaffold_39-1510915933:153953..154085Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1510915933:153503..153545TCONS_00063467-exon-scaffold_39-1510915933:153503..153545Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1510915933:153284..153313TCONS_00063467-exon-scaffold_39-1510915933:153284..153313Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1510915933:152970..153032TCONS_00063467-exon-scaffold_39-1510915933:152970..153032Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1510915933:152657..152737TCONS_00063467-exon-scaffold_39-1510915933:152657..152737Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1510915933:151552..152364TCONS_00063467-exon-scaffold_39-1510915933:151552..152364Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1491911889:164830..165072TCONS_00063467-exon-scaffold_39-1491911889:164830..165072Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1491911889:156069..156156TCONS_00063467-exon-scaffold_39-1491911889:156069..156156Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1491911889:155656..155743TCONS_00063467-exon-scaffold_39-1491911889:155656..155743Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1491911889:154983..155062TCONS_00063467-exon-scaffold_39-1491911889:154983..155062Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1491911889:153953..154085TCONS_00063467-exon-scaffold_39-1491911889:153953..154085Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1491911889:153503..153545TCONS_00063467-exon-scaffold_39-1491911889:153503..153545Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1491911889:153284..153313TCONS_00063467-exon-scaffold_39-1491911889:153284..153313Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1491911889:152970..153032TCONS_00063467-exon-scaffold_39-1491911889:152970..153032Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1491911889:152657..152737TCONS_00063467-exon-scaffold_39-1491911889:152657..152737Clytia hemisphaericaexon
TCONS_00063467-exon-scaffold_39-1491911889:151552..152364TCONS_00063467-exon-scaffold_39-1491911889:151552..152364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:151552..165072 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.0213	51.6446	105.276	109.19	107.541	87.5436	64.9182	68.4901	67.4264	64.9517	73.4459	71.6238	59.7105	63.4181	48.5681	54.4198	55.5847	55.3099	20.8165	21.62	50.5558	50.9192	40.7201	41.2583	49.9402	55.0638	36.8452	37.8393	25.8949	27.8738
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009145U2AF_small
IPR003954RRM_dom_euk
IPR000571Znf_CCCH
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0089701U2AF
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0089701 U2AF
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Blast
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BLAST of TCONS_00063467 vs. Swiss-Prot (Human)
Match: U2AF5 (Splicing factor U2AF 35 kDa subunit-like protein OS=Homo sapiens GN=U2AF1L5 PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 6.060e-96
Identity = 149/186 (80.11%), Postives = 163/186 (87.63%), Query Frame = 2 
Query:  200 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDKCSRLHNKPTFSQTILLQNMYQNPQNQATNPDGMPVTTAAAAAHIMSDVEAQEHYDSFFEDVFLXXXXXXXXXXXMNVCDNLGDHLVGNVYVKFRYEEDAEKASNQVNNRWYNGQPIYAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLKPIS 757
            MAEYLASIFGTEKDKVNCSFYFKIGACRHGD+CSRLHNKPTFSQTI L N+Y+NPQN + + DG+           +SDVE QEHYD FFE+VF E+EEKYGE+EEMNVCDNLGDHLVGNVYVKFR EEDAEKA   +NNRW+NGQPI+AELSPVTDFRE+CCRQYEMGECTRGGFCNFMHLKPIS
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCA--------VSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPIS 178
The following BLAST results are available for this feature:
BLAST of TCONS_00063467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
U2AF56.060e-9680.11Splicing factor U2AF 35 kDa subunit-like protein O... [more]
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