TCONS_00063477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063477
Unique NameTCONS_00063477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063477 ID=TCONS_00063477|Name=TCONS_00063477|organism=Clytia hemisphaerica|type=transcript|length=343bp
GATCAATCCAGCGCTCCCATCTTTAGCACGGTCCACGATTGGCCAATTGG
AGTATCGGTCAACAGATACCAGGTAATACTTTCCCATGTAGTGGAAGAAG
TCGGAGCACAGGTACTGGAATGGGTATTCTGGTGTTGGTGGTGTAGTTGG
GGGCATGCTTGGCTGAGAAGGCGCCATTACGTCACACTGGCGACATCTAG
ATCTTCGTTCTTTGATTGAGTTCGTGATACCAGGCCAAAACACCGCAGAT
TCAGCATGAGCAATCATTGAATTGGTGCCTTGATGTGCTGCGTGGAGATT
ATCAAGGATAGTGTTGCGAAGGCTGGGTGGGATGACGATCCTG
Run BLAST on NCBI

protein sequence of TCONS_00063477-protein

>TCONS_00063477-protein ID=TCONS_00063477-protein|Name=TCONS_00063477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
RIVIPPSLRNTILDNLHAAHQGTNSMIAHAESAVFWPGITNSIKERRSRC
RQCDVMAPSQPSMPPTTPPTPEYPFQYLCSDFFHYMGKYYLVSVDRYSNW
PIVDRAKDGSAGLI
Run BLAST on NCBI

transcript from alignment at scaffold_39:18729..19071

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063477 ID=TCONS_00063477|Name=TCONS_00063477|organism=Clytia hemisphaerica|type=transcript|length=343bp|location=Sequence derived from alignment at scaffold_39:18729..19071 (Clytia hemisphaerica)
CAGGATCGTCATCCCACCCAGCCTTCGCAACACTATCCTTGATAATCTCC
ACGCAGCACATCAAGGCACCAATTCAATGATTGCTCATGCTGAATCTGCG
GTGTTTTGGCCTGGTATCACGAACTCAATCAAAGAACGAAGATCTAGATG
TCGCCAGTGTGACGTAATGGCGCCTTCTCAGCCAAGCATGCCCCCAACTA
CACCACCAACACCAGAATACCCATTCCAGTACCTGTGCTCCGACTTCTTC
CACTACATGGGAAAGTATTACCTGGTATCTGTTGACCGATACTCCAATTG
GCCAATCGTGGACCGTGCTAAAGATGGGAGCGCTGGATTGATC

Coding sequence (CDS) from alignment at scaffold_39:18729..19071

>TCONS_00063477 ID=TCONS_00063477|Name=TCONS_00063477|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_39:18729..19071 (Clytia hemisphaerica)
AGGATCGTCATCCCACCCAGCCTTCGCAACACTATCCTTGATAATCTCCA
CGCAGCACATCAAGGCACCAATTCAATGATTGCTCATGCTGAATCTGCGG
TGTTTTGGCCTGGTATCACGAACTCAATCAAAGAACGAAGATCTAGATGT
CGCCAGTGTGACGTAATGGCGCCTTCTCAGCCAAGCATGCCCCCAACTAC
ACCACCAACACCAGAATACCCATTCCAGTACCTGTGCTCCGACTTCTTCC
ACTACATGGGAAAGTATTACCTGGTATCTGTTGACCGATACTCCAATTGG
CCAATCGTGGACCGTGCTAAAGATGGGAGCGCTGGATTGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039784XLOC_039784Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063477-exon-scaffold_39-1491911889:18729..19071TCONS_00063477-exon-scaffold_39-1491911889:18729..19071Clytia hemisphaericaexon
TCONS_00063477-exon-scaffold_39-1510915933:18729..19071TCONS_00063477-exon-scaffold_39-1510915933:18729..19071Clytia hemisphaericaexon
TCONS_00063477-exon-scaffold_39-1575043694:18729..19071TCONS_00063477-exon-scaffold_39-1575043694:18729..19071Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063477-proteinTCONS_00063477-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:18729..19071 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.299773	0	0	0	0	0	0.223107	0.552707	1.34118	0.528982	0.176082	0	0	0.484008	0.198753	0.407431	0.562887	0	0	1.12374	0.607133	0	0	0	0	0.387442	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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