TCONS_00063496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063496
Unique NameTCONS_00063496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063496 ID=TCONS_00063496|Name=TCONS_00063496|organism=Clytia hemisphaerica|type=transcript|length=800bp
TCTACAATACTTTATTCtataaaatattacaaaaaaatactacGGTTACA
GTTTCTACAGCATAATAAGTTCTTAAAGTTGATATCGTGATCATCTTAAA
GTTaaaagcgagtttatgtatttgcacttttgaagacggtagagtgactg
aagcgatttgaatAACCCACatttctgacccgcaaaatcaagGACGGTAA
ACGTGCTaaaccgtcgtcctcagctggtcaggatctagtcaaattagaac
cttaccgcctccgtcacagaaaaacacacatacataaactcggtaaaaCA
TTAATCTCCATGGTTTGTAATGATTCCCCAATTATTTATGTGTAAGTCGA
GATCGTTTTTTTTTACTATCGGACAGCGAGAAATGAGCTTTTGAAACGCA
AAAAGTGGTGAAATTCCGGCTTTTTTCGGATTTTTCCACTATGGAAAATG
ACGCAATCTAGACTTGAATGCGATGAGTAAGCAAACcgtatcactcttat
ttaaaaataaaatcttaatataatttttgacaGCGCATAATTCAACTTTA
ACTTTTGCAGGTGCAACATAACGCctataaaatttcatttcacttTCTTT
CAAAGTGAAGGAAATCCTAAAAATCCTAAaacacatctctgaaaaatagT
GTTATTTTATCTACAGCACTGGTTTTCTTATCAGGGAGGTTCAGGGAGCG
AGAAAATCTTTCTTCCGTTAATTACCAAATATTGTTAGGTATAACGTCGG
GGAAAAATGAACGTTTTTTTAGGAGTGGCGACTCAAAATCTATTTAACAT
Run BLAST on NCBI

transcript from alignment at scaffold_39:308901..309700

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063496 ID=TCONS_00063496|Name=TCONS_00063496|organism=Clytia hemisphaerica|type=transcript|length=800bp|location=Sequence derived from alignment at scaffold_39:308901..309700 (Clytia hemisphaerica)
ATGTTAAATAGATTTTGAGTCGCCACTCCTAAAAAAACGTTCATTTTTCC
CCGACGTTATACCTAACAATATTTGGTAATTAACGGAAGAAAGATTTTCT
CGCTCCCTGAACCTCCCTGATAAGAAAACCAGTGCTGTAGATAAAATAAC
ActatttttcagagatgtgttTTAGGATTTTTAGGATTTCCTTCACTTTG
AAAGAaagtgaaatgaaattttatagGCGTTATGTTGCACCTGCAAAAGT
TAAAGTTGAATTATGCGCtgtcaaaaattatattaagattttatttttaa
ataagagtgatacgGTTTGCTTACTCATCGCATTCAAGTCTAGATTGCGT
CATTTTCCATAGTGGAAAAATCCGAAAAAAGCCGGAATTTCACCACTTTT
TGCGTTTCAAAAGCTCATTTCTCGCTGTCCGATAGTAAAAAAAAACGATC
TCGACTTACACATAAATAATTGGGGAATCATTACAAACCATGGAGATTAA
TGttttaccgagtttatgtatgtgtgtttttctgtgacggaggcggtaag
gttctaatttgactagatcctgaccagctgaggacgacggtttAGCACGT
TTACCGTCcttgattttgcgggtcagaaatGTGGGTTattcaaatcgctt
cagtcactctaccgtcttcaaaagtgcaaatacataaactcgcttttAAC
TTTAAGATGATCACGATATCAACTTTAAGAACTTATTATGCTGTAGAAAC
TGTAACCgtagtatttttttgtaatattttataGAATAAAGTATTGTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039803XLOC_039803Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063496-exon-scaffold_39-1491911889:308901..309700TCONS_00063496-exon-scaffold_39-1491911889:308901..309700Clytia hemisphaericaexon
TCONS_00063496-exon-scaffold_39-1510915933:308901..309700TCONS_00063496-exon-scaffold_39-1510915933:308901..309700Clytia hemisphaericaexon
TCONS_00063496-exon-scaffold_39-1575043694:308901..309700TCONS_00063496-exon-scaffold_39-1575043694:308901..309700Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:308901..309700 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.129835	0.593156	0.56929	0.287781	0	0	0.073024	0.0511102	0.324507	0.126472	0.251563	3.88905	3.75496	0.170435	0.260929	3.18604	2.9566	9.388	11.6845	7.7168	7.63173	5.02453	0.896329	4.58671	2.13473	0.566459	0.303571	0.0666688	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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