TCONS_00063497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063497
Unique NameTCONS_00063497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length720

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063497 ID=TCONS_00063497|Name=TCONS_00063497|organism=Clytia hemisphaerica|type=transcript|length=720bp
TACCATCATCCATTCTTGACTTGTTCATTTTGGAAGCGGTCGCAGCAGCA
GTTCTCGGTCTATTCAAAAGGTACGGGTGGTTCTCGGACTCTATATAATC
TTCATCCTCCTTCCTGATGTAATCAAAAGCGTCCTCGTAACTGGTGTGAA
ATTCTCTAAAATGGCATTTAACCTTTGGGTACTTCAAGTCAAATCTATTT
TTAATGTCCACAAAGCGCGTTCTATTTTCCAATTTAATGGCTAAATGATA
GTGCGGGTTGCCATCTCGGTGGGATTCCTTGCACGCAGACCAATGTTTGA
CAGCGCTCTCTCCACCAAACGCCTCAACCCAGATCTTTGCAAAATGCTCA
CGGGTGGGAACAATCTCAATGTCAGCCTGACTGTAAGTGATTAAATAAGT
CTGCCTCCTCTGCTGGGACGATTCCCCTTCACTGCTCctccttttatctt
ttttgtttttgctagccatttttacttttattagcACTGTAAATATAAGA
AAGTTTATTTAGTACCTATATTGAGATTTTTAAAGCCTTGTACATATAGT
ATATTTACgagtttattttcatttaagtagTATTTTACCATAgtattgtt
gtttttgtttttgtctctTATGTTTTTTTGTCCTGGACCTGCTGAAACAC
CCATTTTCGAGTCCTTTTGCacgatttgttttgaaaaaaattcgaatttt
tcccGCTGCACGAAAACGAG
Run BLAST on NCBI

protein sequence of TCONS_00063497-protein

>TCONS_00063497-protein ID=TCONS_00063497-protein|Name=TCONS_00063497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MASKNKKDKRRSSEGESSQQRRQTYLITYSQADIEIVPTREHFAKIWVEA
FGGESAVKHWSACKESHRDGNPHYHLAIKLENRTRFVDIKNRFDLKYPKV
KCHFREFHTSYEDAFDYIRKEDEDYIESENHPYLLNRPRTAAATASKMNK
SRMDDG
Run BLAST on NCBI

transcript from alignment at scaffold_39:381682..382401

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063497 ID=TCONS_00063497|Name=TCONS_00063497|organism=Clytia hemisphaerica|type=transcript|length=720bp|location=Sequence derived from alignment at scaffold_39:381682..382401 (Clytia hemisphaerica)
CTCGTTTTCGTGCAGCgggaaaaattcgaatttttttcaaaacaaatcgt
GCAAAAGGACTCGAAAATGGGTGTTTCAGCAGGTCCAGGACAAAAAAACA
TAagagacaaaaacaaaaacaacaatacTATGGTAAAATActacttaaat
gaaaataaactcGTAAATATACTATATGTACAAGGCTTTAAAAATCTCAA
TATAGGTACTAAATAAACTTTCTTATATTTACAGTgctaataaaagtaaa
aatggctagcaaaaacaaaaaagataaaaggagGAGCAGTGAAGGGGAAT
CGTCCCAGCAGAGGAGGCAGACTTATTTAATCACTTACAGTCAGGCTGAC
ATTGAGATTGTTCCCACCCGTGAGCATTTTGCAAAGATCTGGGTTGAGGC
GTTTGGTGGAGAGAGCGCTGTCAAACATTGGTCTGCGTGCAAGGAATCCC
ACCGAGATGGCAACCCGCACTATCATTTAGCCATTAAATTGGAAAATAGA
ACGCGCTTTGTGGACATTAAAAATAGATTTGACTTGAAGTACCCAAAGGT
TAAATGCCATTTTAGAGAATTTCACACCAGTTACGAGGACGCTTTTGATT
ACATCAGGAAGGAGGATGAAGATTATATAGAGTCCGAGAACCACCCGTAC
CTTTTGAATAGACCGAGAACTGCTGCTGCGACCGCTTCCAAAATGAACAA
GTCAAGAATGGATGATGGTA

Coding sequence (CDS) from alignment at scaffold_39:381682..382401

>TCONS_00063497 ID=TCONS_00063497|Name=TCONS_00063497|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_39:381682..382401 (Clytia hemisphaerica)
atggctagcaaaaacaaaaaagataaaaggagGAGCAGTGAAGGGGAATC
GTCCCAGCAGAGGAGGCAGACTTATTTAATCACTTACAGTCAGGCTGACA
TTGAGATTGTTCCCACCCGTGAGCATTTTGCAAAGATCTGGGTTGAGGCG
TTTGGTGGAGAGAGCGCTGTCAAACATTGGTCTGCGTGCAAGGAATCCCA
CCGAGATGGCAACCCGCACTATCATTTAGCCATTAAATTGGAAAATAGAA
CGCGCTTTGTGGACATTAAAAATAGATTTGACTTGAAGTACCCAAAGGTT
AAATGCCATTTTAGAGAATTTCACACCAGTTACGAGGACGCTTTTGATTA
CATCAGGAAGGAGGATGAAGATTATATAGAGTCCGAGAACCACCCGTACC
TTTTGAATAGACCGAGAACTGCTGCTGCGACCGCTTCCAAAATGAACAAG
TCAAGAATGGATGATGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039804XLOC_039804Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063497-proteinTCONS_00063497-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063497-exon-scaffold_39-1491911889:381682..382401TCONS_00063497-exon-scaffold_39-1491911889:381682..382401Clytia hemisphaericaexon
TCONS_00063497-exon-scaffold_39-1510915933:381682..382401TCONS_00063497-exon-scaffold_39-1510915933:381682..382401Clytia hemisphaericaexon
TCONS_00063497-exon-scaffold_39-1575043694:381682..382401TCONS_00063497-exon-scaffold_39-1575043694:381682..382401Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:381682..382401 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.694281	0.60933	0.31444	0.0769076	0.468138	0.147972	0.446304	0.250694	0.234023	0.57975	0.14068	0.231194	0.554093	0.671336	0.433659	0.50769	0.208478	0.427366	0.369018	0	0.134254	0.196453	0.238815	0.361862	0.894502	0.532215	0.190399	0	0.154119	0.235535
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022690Gemini_AL1_REP_cat-dom
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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