TCONS_00063518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063518
Unique NameTCONS_00063518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063518 ID=TCONS_00063518|Name=TCONS_00063518|organism=Clytia hemisphaerica|type=transcript|length=1744bp
GCATTATTAAAGCatacaaaaatacaggaaatTCACCACCCAAGAGACGT
CGTGAACGAACTACCTTCACTAAAGCACAACTCGATGTATTAGAAGATCT
CTTTGGCAAAACAATGTACCCTGATGTTTTCATGAGAGAAGAAGTTGCCA
AAAAAATCAGTCTGGCTGAAGCTCGAGTACAGGTCTGGTTCAAAAACAGA
CGTGCCAAATTTCGTCGGTCACGAGAAAGCCCAGGACGACACTTCGATCA
CACCAAATTCTTACAACGTGATAAATTCTTACAAGACGATTTGGTTCGTT
CATTCAAATCAGGACCAAGCAGTTTCTTACCACCATATCAATATCAAAAC
CCGTTATGGAAATACCCACCACCTGCAACAGAGCACAGCCCAACATACGG
TACGTCACAGGTAGTAGACGATTCTTTTTATAGACAATCAACGAACGGTT
ATAACTCAGTTTCGCCTTACACCGACTACCCTTCGTCTTACTCCACTTCA
CCACGTCAACAATATTTCTCCACACAATACTACAGTCCACCCGGTGGTAA
CCATGACTACAACTCATGCGCACCAAGCACCACTACATCGAACACTGTAC
CTAGTATGTCCTTTTCACCTCACGAAAACACAACGAAAACAGATCTCAAT
TTACCGAACACTTTTCAATGGAGCGGCAGTGGTGGCACTCCGCAATACGG
AATGACAGCCGGTGGATCAAACATATAAACATTCAGGAGTCGTCTTTGAC
AACTCAAAACTAAAAACGAGAATACAAAACTAAAATATGGGGGACCATTC
TCTTGACACAGACGCGCAAACGGCAATCAGAATCAACCATCATATGGGTT
GGAGACTTGGATAATCCTGGGAAAAGAATGCCGCACTCAAGCGGGTTTTT
GCTCTTCGATTATTCTTCGTATTACTGGTCGAGCAGTCAGTCGGTATTTT
ACTGACAGAGGTATCTAGTTCCGATTTTAATTACTCGAAGGATGAAACTT
TTAAAGTTTTTATAGAAAATGTAAAAAACTAACATCAGATAATTGTGTAA
TTGAGAATGGAACGCCCGTCTACCGGATGGAGTTGGAATGCAACAGGAAC
ATTATGAAAAGAAGAAGATTTGTTTTCTTTCTTCGAAGAACAAAGAAAGA
GATTCAAACTTGATACATTTTCATAAATAAACAAAAACAACGTCTTGAAC
TATTTTCCCTAGAAACAAACTAAAAATACTTGTTTTATTTTTACGTATTA
TTTGAACCATATTTTTAAATACTTTTATCCAATTTTTTTTTATTTTGGGA
ATTGATGACCAATTATTAAGTTGAACCCTGAAATCACCAAGTTTTTAGTT
TTCGATTTTTACAGGTTTTTAATGAGATCTTTTATTTTCTTTCGTGTACA
TATATACTCATGACATTTATTTTTCTTCTAAGAGCATCGTTTTATTTTAC
ATTTATTTTTTTAAGTTGTATTTTTTTCTCGTCCTTATTTTTCTCATATA
TACTTTCATTCGATATTTCTTTTTAAGGAAACAATTTTAATGTAGCTAGG
GAAATAATTCTAGGTGGCTGCTGTCTTGACGACTGTCAGCTTTTAATAGC
AATTTATTTGTAATGTTGTACATAAAATGTGTATAATGCTAGTGGGTTTA
TAACATGATGATAATAGTTACATATTGAAAAAAGAACTCATTCTATTGTA
TACACAGacaattttaattcaaaagaccgaacaaataaaaacaa
Run BLAST on NCBI

transcript from alignment at scaffold_391:81782..83915-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063518 ID=TCONS_00063518|Name=TCONS_00063518|organism=Clytia hemisphaerica|type=transcript|length=2134bp|location=Sequence derived from alignment at scaffold_391:81782..83915- (Clytia hemisphaerica)
GCATTATTAAAGCATACAAAAATACAGGAAATTGTATGTGTTTTCGAACT
GACAAAGAAATAAGTAGGGGTTAAATTCTTTACTTAAATACACAACACCT
TACTGTGGTTAATGAGCACTATTCAGTGACGGGTAGTCAGTGATTTTGTA
AAGACATACTCTTGACAGTGTATTTAATTCAAGATGGTTGTCCTTTCAGC
ACCACCCAAGAGACGTCGTGAACGAACTACCTTCACTAAAGCACAACTCG
ATGTATTAGAAGATCTCTTTGGCAAAACAATGTACCCTGATGTTTTCATG
AGAGAAGAAGTTGCCAAAAAAATCAGTCTGGCTGAAGCTCGAGTACAGGT
AAATTCCAATTGATTTGTTTGTAATGAATGTTTATGACTTGAATAATACT
ACAAACTACTTCAAAGTACAAACAGATTGAGTAAATGTATTGCCATATGA
TTGGTCTAGCGCAACCGTTAACATAGGGTTTATTATTGATTTTCTGATTA
ATATAGAAGGATATAGAATTTGGAATCGTTACCTTCATTATTTCTAAAAT
TTTCGATTTCGTTTGCTTACAGGTCTGGTTCAAAAACAGACGTGCCAAAT
TTCGTCGGTCACGAGAAAGCCCAGGACGACACTTCGATCACACCAAATTC
TTACAACGTGATAAATTCTTACAAGACGATTTGGTTCGTTCATTCAAATC
AGGACCAAGCAGTTTCTTACCACCATATCAATATCAAAACCCGTTATGGA
AATACCCACCACCTGCAACAGAGCACAGCCCAACATACGGTACGTCACAG
GTAGTAGACGATTCTTTTTATAGACAATCAACGAACGGTTATAACTCAGT
TTCGCCTTACACCGACTACCCTTCGTCTTACTCCACTTCACCACGTCAAC
AATATTTCTCCACACAATACTACAGTCCACCCGGTGGTAACCATGACTAC
AACTCATGCGCACCAAGCACCACTACATCGAACACTGTACCTAGTATGTC
CTTTTCACCTCACGAAAACACAACGAAAACAGATCTCAATTTACCGAACA
CTTTTCAATGGAGCGGCAGTGGTGGCACTCCGCAATACGGAATGACAGCC
GGTGGATCAAACATATAAACATTCAGGAGTCGTCTTTGACAACTCAAAAC
TAAAAACGAGAATACAAAACTAAAATATGGGGGACCATTCTCTTGACACA
GACGCGCAAACGGCAATCAGAATCAACCATCATATGGGTTGGAGACTTGG
ATAATCCTGGGAAAAGAATGCCGCACTCAAGCGGGTTTTTGCTCTTCGAT
TATTCTTCGTATTACTGGTCGAGCAGTCAGTCGGTATTTTACTGACAGAG
GTATCTAGTTCCGATTTTAATTACTCGAAGGATGAAACTTTTAAAGTTTT
TATAGAAAATGTAAAAAACTAACATCAGATAATTGTGTAATTGAGAATGG
AACGCCCGTCTACCGGATGGAGTTGGAATGCAACAGGAACATTATGAAAA
GAAGAAGATTTGTTTTCTTTCTTCGAAGAACAAAGAAAGAGATTCAAACT
TGATACATTTTCATAAATAAACAAAAACAACGTCTTGAACTATTTTCCCT
AGAAACAAACTAAAAATACTTGTTTTATTTTTACGTATTATTTGAACCAT
ATTTTTAAATACTTTTATCCAATTTTTTTTTATTTTGGGAATTGATGACC
AATTATTAAGTTGAACCCTGAAATCACCAAGTTTTTAGTTTTCGATTTTT
ACAGGTTTTTAATGAGATCTTTTATTTTCTTTCGTGTACATATATACTCA
TGACATTTATTTTTCTTCTAAGAGCATCGTTTTATTTTACATTTATTTTT
TTAAGTTGTATTTTTTTCTCGTCCTTATTTTTCTCATATATACTTTCATT
CGATATTTCTTTTTAAGGAAACAATTTTAATGTAGCTAGGGAAATAATTC
TAGGTGGCTGCTGTCTTGACGACTGTCAGCTTTTAATAGCAATTTATTTG
TAATGTTGTACATAAAATGTGTATAATGCTAGTGGGTTTATAACATGATG
ATAATAGTTACATATTGAAAAAAGAACTCATTCTATTGTATACACAGACA
ATTTTAATTCAAAAGACCGAACAAATAAAAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039817XLOC_039817Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063518-exon-scaffold_391-1575043694:83883..83915TCONS_00063518-exon-scaffold_391-1575043694:83883..83915Clytia hemisphaericaexon
TCONS_00063518-exon-scaffold_391-1575043694:83568..83716TCONS_00063518-exon-scaffold_391-1575043694:83568..83716Clytia hemisphaericaexon
TCONS_00063518-exon-scaffold_391-1575043694:81782..83343TCONS_00063518-exon-scaffold_391-1575043694:81782..83343Clytia hemisphaericaexon
TCONS_00063518-exon-scaffold_391-1510915933:83883..83915TCONS_00063518-exon-scaffold_391-1510915933:83883..83915Clytia hemisphaericaexon
TCONS_00063518-exon-scaffold_391-1510915933:83568..83716TCONS_00063518-exon-scaffold_391-1510915933:83568..83716Clytia hemisphaericaexon
TCONS_00063518-exon-scaffold_391-1510915933:81782..83343TCONS_00063518-exon-scaffold_391-1510915933:81782..83343Clytia hemisphaericaexon
TCONS_00063518-exon-scaffold_391-1491911889:83883..83915TCONS_00063518-exon-scaffold_391-1491911889:83883..83915Clytia hemisphaericaexon
TCONS_00063518-exon-scaffold_391-1491911889:83568..83716TCONS_00063518-exon-scaffold_391-1491911889:83568..83716Clytia hemisphaericaexon
TCONS_00063518-exon-scaffold_391-1491911889:81782..83343TCONS_00063518-exon-scaffold_391-1491911889:81782..83343Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_391supercontigscaffold_391:81782..83915 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0362266	0.0420625	0	0.0732407	0	0	0.508348	0	0.217123	0	0.0681285	0	0	0	0.109816	0	0	0	0	0	0	0	0	0	0	0.29693	0	0.041233	0
Blast
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BLAST of TCONS_00063518 vs. Swiss-Prot (Human)
Match: OTX2 (Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.708e-24
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 3 
Query:   33 SPPKRRRERTTFTKAQLDVLEDLFGKTMYPDVFMREEVAKKISLAEARVQVWFKNRRAKFR 215
            +P K+RRERTTFT+AQLDVLE LF KT YPD+FMREEVA KI+L E+RVQVWFKNRRAK R
Sbjct:   34 TPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR 94
The following BLAST results are available for this feature:
BLAST of TCONS_00063518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTX21.708e-2478.69Homeobox protein OTX2 OS=Homo sapiens GN=OTX2 PE=1... [more]
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