TCONS_00063552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063552
Unique NameTCONS_00063552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063552 ID=TCONS_00063552|Name=TCONS_00063552|organism=Clytia hemisphaerica|type=transcript|length=346bp
AATTTTTCCTGGTATTCTTTTCAATCGAAAGGTCATCTTTAACATTTTCA
TTGACAAAATCTACTACATACAGTACATTATAACTTTATTGTAACATCCT
TcatttcaaagataaaaaagcTAATATGTTCTAAAAAATCTGCCGAATCT
CCCATCTCAATATCCATCCCATTCTTGCCGAGTCTGTATTAGAGCCTCGC
ATACGAAATAAGTAGTCGAGCTCCAGTTTCTGGACTACATTCTGTACATT
GTACACgtttatttttattacatttccgAGTTTAAATTTTGTATATGTTT
GAAGCGAAGGAGATATGAGTTTTGAGTTTTCAAGCCACCGATAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_392:242748..243093

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063552 ID=TCONS_00063552|Name=TCONS_00063552|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at scaffold_392:242748..243093 (Clytia hemisphaerica)
CTTTATCGGTGGCTTGAAAACTCAAAACTCATATCTCCTTCGCTTCAAAC
ATATACAAAATTTAAACTcggaaatgtaataaaaataaacGTGTACAATG
TACAGAATGTAGTCCAGAAACTGGAGCTCGACTACTTATTTCGTATGCGA
GGCTCTAATACAGACTCGGCAAGAATGGGATGGATATTGAGATGGGAGAT
TCGGCAGATTTTTTAGAACATATTAgcttttttatctttgaaatgAAGGA
TGTTACAATAAAGTTATAATGTACTGTATGTAGTAGATTTTGTCAATGAA
AATGTTAAAGATGACCTTTCGATTGAAAAGAATACCAGGAAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039841XLOC_039841Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063552-exon-scaffold_392-1491911889:242748..243093TCONS_00063552-exon-scaffold_392-1491911889:242748..243093Clytia hemisphaericaexon
TCONS_00063552-exon-scaffold_392-1510915933:242748..243093TCONS_00063552-exon-scaffold_392-1510915933:242748..243093Clytia hemisphaericaexon
TCONS_00063552-exon-scaffold_392-1575043694:242748..243093TCONS_00063552-exon-scaffold_392-1575043694:242748..243093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_392supercontigscaffold_392:242748..243093 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.355317	0.83155	0.459488	0.218221	1.05723	0	0.19073	1.21843	1.92048	1.13547	1.09963	0.689526	1.67749	3.97956	3.0963	2.13179	0	0	1.45913	0	0.248139	0	0	0.287426	0.484064
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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