TCONS_00063585 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063585
Unique Name	TCONS_00063585
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2810

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_394:46070..55730+

transcript sequence

>TCONS_00063585 ID=TCONS_00063585|Name=TCONS_00063585|organism=Clytia hemisphaerica|type=transcript|length=2810bp
aacaaaacagTTATAATATTTATAAGGAGAAGAAGTGTAACAACAATTAT
TAgaaattattgttttgatgGTTTTTGGTACATTTTGGATTGCTGCAACA
GTCTCTGTTTGAAGAGCTTTTCAACAAATCCATTTTCAGCTGGGAATATT
ATATTGTATTGTTGTGAAAATTGTGTATTTCCCAAATGAAAATGAGATTT
CGAAGACATTCTGCCCCTTTGGGCATTTTATATgagcagcaaaatttgaa
gttgGATTCGATCTCATCAATCATGGAAAGCAcgaaagaacaaaagaaga
aagaacCCATTCAAGAGGTACTTGCATGTGGCAAACCATACCCAATGGTG
GTACTTCCAGTGGAAGGTGATTATTGGATGGAGGGGACGTACCATATCCT
ATCACGTGATATGTACGATCGGCCCATCTTCCCGACTATCGATCGTAGTC
GGTGTGTCTTGGATGACGACCAAACTGTTTATAATTACCGAAGAAATTTC
GCTGGAAAAGAACATACAAATTACGTCGGCAACGATTCTAAGCATGGTCC
AGTCCTGATGTCTGTTCTCCTTGACTCATCCCAACCCGTATCCGAACGTC
CCGCCCCTAGTCCGCCATCCGCCCAAATGGCAAACCCCCCTCAACGCCCT
AAAGAACAATTCAAAGTGATTTTACGTTTGAAGAATAAAACGATCGAAAA
AACGATATCGCCCTCGCATTTTTCTTCCGATTGTCCGGGACCGAGAGAAA
TTATGAAGTATATGCTCGAAGATGATGTGGACGTTGACCGATTCCATCCA
GTCGTCGTACCGCGTGCTAGCGAAGAAATTATGCGCTTCGACGAACACTC
TGTTTCCAACTGTTACAAAATTGGAGTTCTGCATCAGAAACACGGACAGA
TTTCAGAAGAAGATTATCTCCAAAATCCCGAAGAAACGCCAGCTTTGCGA
GAATTTTTAGACTGCATTGCAGATCGAGTTGATTTAAAAGATTTCGAGAG
TTACCGAGGTGGCTTGGATGTAAAACATGGGCAAACTGGAGAACATTCGT
ATTACACTAATTATAAAGAGAGAGAAGTGATGTTCCACGTTTCATCCATG
ATCCCTTACAAACCGAACGATTCTCAACAACTCAGTCGGAAACGTCACAT
CGGTAATGACGTCGTCAGTATCGTCTTCCAAGAAGAAAACACGCCGTTTT
GTCCGAACTCGATCCGCTCGCATTTCCTACACTGTTTCATCGTCGTTCAA
GTAGAAAACCCTAACTCAGAGGAAACCTATTATAAAGTTTCAGTGGCGGC
TAAAGAGGGCGTTCCAAAATTTGCGCCCAGTCTTCCGAACCCTTGCATAT
TCAAGAGAAGCGACGAGCTAAAGGATTTTCTGTTGACAAAGATTTTGAAC
GCTGAAAATGCGGCTGTCAAAAGCGAAAAGTTCTCAGCTCTAGCGGAGCG
TACAAGGAGTATGCTTTTACAAGGAATAGTAACCGACTTCATCGCCAAAA
ACGAGAAGATGTTGGATGATGATAATCTCTCGAACGGTAGCGACAACACA
GATACACACCACGTCAAATCTGGAAGCTTCTTATCCACGTTCCGGTCTGC
AATTTATCGATCGTCACAACGTAGCGAGCAAGACAATATCTCGATATCTA
GTAGCTCTAGTAGTCTCCCTTCAACACTAAATGGTAGTCACTCACTTTCG
TTGAACGATTTGAATAACTTTGATAGTGAAGAACACCGAAGAAAAGATAT
GTCTATGTCAACAAGTCCACGTCCAGGGCGAAAGACTAAAAAAGACAAAG
ACAAACATAGCAAGAAAGATCGCGCAAAAAGTGCAATCTTATCAATCCTT
CCGCCCGTCTCTCATCCAATCAGCGAGCAGGATTTTAACGACTTAGCATC
ACCAACTCTCCTTCAAATCTCCACAAAACAATCACCAACTTCTTCCAATT
CAAATCTCAACGAGCAACCAACGTCACGACCGCGCACGCGCAGTAAATTT
TATACTAACCAATTATTTGACGAATTCGAAGAGCCAGTGACGTTGACATC
GACCAATCAGATTTCACCACGTTGTCACACCATGAGTGGTGGAGAAACAA
GAAAAGAAAATGGTAGTGATCCATCCATACAGCAGCCGAAAATCAGTATC
ACGGCAACCACGGTGACTAGTTCAGACGAGGAAAATAATAACGCGAACGA
CCCTTCACCTTCATCTAGTTCTTCTACAGATACAGCCAAAGAGGAAATTG
AGAAATTACGAGCGGAAATACATAAACTGAAAATCGACAAAATGGATCTC
ATACGGCAGAACgtgATCCATCAACGGGAGATTAAGAAATTAAACGATAA
AACGCAGACCAACGGTGATTATCGTTCTCTATCACTCAAACATTCGTATG
ACCCGAGAAAAATGTACAACGCAACTGCTACTACGTTTGCCGAGTTTGTT
TGACCACGACTGATGTTGAACACGCTAGAATGAAAATgatatatttttgt
gaaatgacAGATATAGTCATCAGTGATGTTAGATTTCTGCATTTTTATCT
TTGTTAAACTAGTCCCGATAGCGATAGGCCAACcgtctttttcaaaaaat
gtcataacatttgaaaaaaaaatttcagaaatacGCCATTTTGCTGCAAC
TCTTGGGTTTGATGATAAATTTTGTTGAGTTATATATCTACCAAATTAAT
TAGGCTTTTACCTTTCTTTTGTAAATATCTTTataattttgctgacatca
acATTTATATTTTCTATTTAGTTTGTGTATTTATTTGATATAAAAATGAT
AATATGCTTG

Run BLAST on NCBI

transcript from alignment at scaffold_394:46070..55730+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063585 ID=TCONS_00063585|Name=TCONS_00063585|organism=Clytia hemisphaerica|type=transcript|length=9661bp|location=Sequence derived from alignment at scaffold_394:46070..55730+ (Clytia hemisphaerica)
aacaaaacagTTATAATATTTATAAGGAGAAGAAGTGTAACAACAATTAT
TAgaaattattgttttgatgGTTTTTGGTACATTTTGGATTGCTGCAACA
GTCTCTGTTTGAAGAGCTTTTCAACAAATCCATTTTCAGCTGGGAATATT
ATATTGTATTGTTGTGAAAATTGTGTATTTCCCAAATGAAAATGAGATTT
CGAAGACATTCTGCCCCTTTGGGCATTTTATATgaggtatttttttcatt
taagattTGTCCTTCTATCAatatttgtttaattttatagtatgtgatta
ttttttgagttttggtCTTAAAGTCATCAGTTCTCAATTTGTTTAAATGG
ATAGCTAGCCTACAGATTTCTCTGGAAAACCTTATCAAAAGACTTTTATT
GTTATTGATACtaattttatacatttttatttCGTATCAGGGGGTTTata
attttgttattttccTCAATGTTTAGAATTCGTCGATCCTTTTCGATTCT
ATAAAATCAGAATGTTCCCATCCttgagtttgaaaaatattgttttgaag
TGATTCGTTTGAAAGCTTATGAGATAATTGGAATCAGGAAAGTGTAACAT
AATCCTTTTTCCTGAAATATCAAACACTGATATGCTTCACATATACCGCC
AATGTAATCGAATTTGACATTGGAAATTCATCCAATGGATAGTCTcaact
aatgagaaaataactGTTTTCCCAGTATAATGATGTAATAAATATTCCAC
TCATGAATATCTTATCAACGATCTTTTATATCTTTAACCAATAATTTATA
GATTTTTAGATATTAAGGGATAAGGTTGAGGGAGGCCATCGCTTTTATTC
GAATCAAAGAAAGCTTCGAATCAAAGAGGCTCAActttgaaagaaagaaa
catTGTTAAATCAGCTTCGTTAATTTAAAGTTTTTCCATTTTCGTTTCGT
CCCTGATGCGTTTATTTTTCATATATCCTTCTTTCTCTACAgcagcaaaa
tttgaagttgGATTCGATCTCATCAATCATGGAAAGCAcgaaagaacaaa
agaagaaagaacCCATTCAAGAGGTTGGTTTTATCATTTGCCTGGTTGTT
TATTTGTTCGGCGGCAGTTTCATCTAGGGGGCCAATTCTAGGTCGtggaa
atggaaaatttttacCAATAAGATTTTCTTTGGccatttaaaagattttg
tcaacaagtggtttttttgtcactttttcccAACGAAGAGGGAACGACCG
AACGATAAATGCATAATGCACCTCAAAGTAAACGATTCGTTAGATTGCCT
TGACTCACGAGAGTATAAACTTGAACGGAATATTGTTACTAAATcagact
tttgaaaaattccccatcacaaaaaattttgtacaattttttgttaataa
tGATTGCTTATTAAACCCGTCAGTAACGACTCCCCGTACACAGGAAGTGT
GAAGGTTGGTCGAACGCAAAACTCATTTGTATCATGTATCACCCACAATT
ATGATGTGGTCGGATATAGTATACCAAAATGAGATTCTTTGACACTATTA
TTATATATAGCGGCTTATGATTAATGGCGAAATTgcttttaaattaattt
ttggaaagtcAATTGTTTGACAACTTCTACACATGAAACTGACCATTTTT
TTGGAAcaaaattttttgggaaatattttttctcctaACGTCAGCTCTCT
TATAGTCAAATTTTATACGTTGCCTGATCCTGTAGCTAACCTGTATACGG
GATACGTTGATAAGATACCTTTGGCTGAACCATAAAAAATTAATAGTTCC
CAAACTATGAATTACAATCTTCTAAGAAAAGTTGATGTTTAAGAGTCCAT
GAAGCATTCATAAAACGTTTCTGTTTCAATGTAGGTACTTGCATGTGGCA
AACCATACCCAATGGTGGTACTTCCAGTGGAAGGTGATTATTGGATGGAG
GGGACGTACCATATCCTATCACGTGATATGTACGATCGGCCCATCTTCCC
GACTATCGATCGTAGTCGGTGTGTCTTGGATGACGACCAAACTGTTTATA
ATTACCGAAGAAATTTCGCTGGAAAAGTAAGTTTTTATTATGTTACTTGG
ATGTTCAAGTATCTGAGCAAAGTTGTTCAAAGTTCGTTGCCTTCAGAAGC
ACTTTTTTATGAACACAAAAAACTGAGCATTGTATTGTAGGTATCGATTT
TGATCGTTATATCTTGTTAGAATATACCAAGCAAGAAGATATATTACTTC
AGATCAATCTGGATTTAAAGAATATTTAATATTTACAAACTTTTCGATGC
CTGGTTTATTTTccaattatttaattttttcatttttaaacttCTTCTCA
CTTTATTTTCTTAGGAACATACAAATTACGTCGGCAACGATTCTAAGCAT
GGTCCAGTCCTGATGTCTGTTCTCCTTGACTCATCCCAACCCGTATCCGA
ACGTCCCGCCCCTAGTCCGCCATCCGCCCAAATGGCAAACCCCCCTCAAC
GCCCTAAAGAACAATTCAAAGTGATTTTACGTTTGAAGAATAAAACGATC
GAAAAAACGATATCGCCCTCGCATTTTTCTTCCGATTGTCCGGGACCGAG
AGAAATTATGAAGGTATGTTATAGCtaagaaatatttcatttcaattcaa
GTTTTATAGGTGATGTAcataaatttcctttttttgaaatttgagtgTTA
TGGAAAAGGCTTTAAAGGCTTACTTGGCTACAAATAATCATTTGGGTGGG
AATTTCGTCATCTGACTTTCTGACGTATATGGAATGTTTTAAACTTTTCT
ACAAAAGAAATCATAATTTCCAATTCTCCCTACAGTATATGCTCGAAGAT
GATGTGGACGTTGACCGATTCCATCCAGTCGTCGTACCGCGTGCTAGCGA
AGAAATTATGCGCTTCGACGAACACTCTGTTTCCAACTGTTACAAAATTG
GAGTTCTGCATCAGAAACACGGACAGGTCAGTTCTCTTaattgtcaaaat
aaaaatatgcatCTCAAATAAAAGTATTCGGGTTGTTGCTGTACTGCAGC
CTTTACTAAAAAGCTCCACGAAAACGGCTAAATAATACAGTAGTTCCACA
TTAAATACTTATATTATGCATTTACGATTATCTTTAAGCTatcataatat
aatataataaagagttgacacaatatctttgtttcaaactcagagtttca
tggtgcacaggcaccaatcttcagtgaaatatcTTTAAGCTATCAACTTT
CCTGATTAACGTTTAGTCTGGTTTTCAGGAAGAAACATGATTCCATAAGT
CTGATTGACACGTTTCTTTTGTCAGACTTCTGAAAACGAATAGGTGCCGT
CCTGGGAGACGTAGCTCTTCCTCTGTTCTGAAAAGTCTTTGAGGAAAGTC
TGCGTTTTTGAGCCTCTGATTCTTTAAATCTTTCTTTTAATCCTCACTTC
CTCGCCATACTTGACAGCTTCAATGCTGTATTTATCGTTCAGAtcattta
acaattattttcatcattattatcTCCATTAGATTTCAGAAGAAGATTAT
CTCCAAAATCCCGAAGAAACGCCAGCTTTGCGAGAATTTTTAGACTGCAT
TGCAGATCGAGTTGATTTAAAAGATTTCGAGAGTTACCGAGGTGGCTTGG
ATGTAAAACATGGGCAAACTGGAGAACATTCGTATTACACTAATTATAAA
GAGAGGTAGGTGGTTTGGAACTAAATCTTGTTAAACTACTTCAAGCATCA
CCGAATACTGGCATATTTAGACAAGCAATAACTACCAGAGATGGAGTTAG
TTGAGCGACTAAGTACAACTTTTAGAAGTTGTTATAATATCTCGTTTAAC
CAAGAAAGTATACAGCCAACTTTTTACTTGGTGTCCTTTCTATTCGACAG
TCCAAGAAgttaaaattgttttcttttatcatCTTCCTTCCTTCATATAT
TTCTTTAGAGAAGTGATGTTCCACGTTTCATCCATGATCCCTTACAAACC
GAACGATTCTCAACAACTCAGTCGGAAACGTCACATCGGTAATGACGTCG
TCAGTATCGTCTTCCAAGAAGAAAACACGCCGTTTTGTCCGAACTCGATC
CGCTCGCATTTCCTACACTGTTTCATCGTCGTTCAAGTAGAAAACCCTAA
CTCAGAGGAAACCTATTATAAAGTTTCAGTGGCGGCTAAAGAGGGCGTTC
CAAAATTTGCGCCCAGTCTTCCGAACCCTTGCATATTCAAGAGAAGCGAC
GAGCTAAAGGATTTTCTGTTGACAAAGATTTTGAACGCTGAAAATGCGGC
TGTCAAAAGCGAAAAGTTCTCAGCTCTAGCGGTAAGTTTATGACTGACAT
TGATTAAGTCTAAAAGTTATAATGATGTAGTTTTCTTTTATTATGAGGAC
TTATTAGGAAATTCTCCTCTTAAATTTTCTCACACTATCAGGATGTTAAT
AATTTAAAATGTATTTGTTAAAGCACGTCTTAGTTCACTGTATTATCAct
tctgatagcgctcacgaaAGAGAATCTTTCGaaaaaatgcgaaaaaaaaG
CGGCTCTGGTGATTGAATAAAGATCCGATTCTTAAACTTGCTTTTCAACC
TGTTCATTTCAACAGGAGCGTACGAGGAGCATGCTTTTACAAGGAATAGT
AACCGACTTCATCGCCAAAAACGAGAAGATGTTGGATGATGATAATCTCT
CGAACGGTAGCGACAACACAGATACACACCACGTCAAATCTGGAAGCTTC
TTATCCACGTTCCGGTCTGCAATTTATCGATCGTCACAACGTAGCGAGCA
AGACAATATCTCGATATCTAGTAGCTCTAGTAGTCTCCCTTCAACACTAA
ATGGTAGTCACTCACTTTCGTTGAACGATTTGAATAACTTTGATAGTGAA
GAACACCGAAGAAAAGATATGTCTATGTCAACAAGTCCACGTCCAGGGGT
GAGcttttctcttattttcttCATCAACCGATATTAATGGCATGGAACAC
ACCCCTTAAATCTTTATCAAAACATTACTTGGTGTGTGATCATTTAATGA
GATGTTTTGCCAAATAATACCTTACAGAACGTAAATTTGGCTACAATTCC
AGCTCGACTGGTTGACTCTGTAGATTTGACAGGCCCCAcgccatgaaatt
gaaagtggggggAGGGGGCAATGAATATAAAGTCTAAAGAGGCGcaacca
aaaatttttactttgtaaaaaaggggggggggcatggccccCTCTGGTCC
CCCCGGTGGCGTGGGcccttgaatttcaaatttgtttcCCATTTAACAAA
TTCAATTTGAatcttaaatttcttattgGTTTTCAAACtctaataatatt
ttttacctATTTTCTCTTTCCAGCGAAAGACTAAAAAAGACAAAGACAAA
CATAGCAAGAAAGATCNGGATGTTAATAATTTGAAATGTATTTGTTAAAG
CACGTCTTAGTTCACTGTATTATCActtctgatagcgctcacgaaAGAGA
ATCTTTCGAAAAAATGCGAAAAAAGCGGCTCTGGTGATTGAATAAAGATC
TGATTCCTAAACTTGCTTTTCAACCTGTTCATTTCAACAGGAGCGTACAA
GGAGTATGCTTTTACAAGGAATAGTAACCGACTTCATCGCCAAAAACGAG
AAGATGTTGGATGATGATAATCTCTCGAACGGTAGCGACAACACAGATAC
ACACCACGTCAAATCTGGAAGCTTCTTATCCACGTTCCGGTCTGCAATTT
ATCGATCGTCACAACGTAGCGAGCAAGACAATATCTCGATATCTAGTAGC
TCTAGTAGTCTCCCTTCAACACTAAATGGTAGTCACTCACTTTCGTTGAA
CGATTTGAATAACTTTGATAGTGAAGAACACCGAAGAAAAGATATGTCTA
TGTCAACAAGTCCACGTCCAGGGGTGAGcttttctcttattttcttCATC
AACCGATATTAATGGCATGGAACACACCCCTTAAATCTTTATCAAAACAT
TACTTGGTGTGTGATCATTTAATGAGATGTTTTGCCAAATAATACCTTAC
AGAACGTAAATTTGGCTACAATTCCAGCTCGACTGGTTGACTCTGTAGAT
TTGACAGGCCCCAcgccatgaaattgaaagtggggggAGGGGGCAATGAA
TATAAAGTCTAAAGAGGCGcaaccaaaaatttttactttgtaaaaaaggg
gggggggcatggccccCTCTGGTCCCCCCGGTGGCGTGGGcccttgaatt
tcaaatttgtttcCCATTTAACAAATTCAATTTGAatcttaaatttctta
ttgGTTTTCAAACtctaataatattttttacctATTTTCTCTTTCCAGCG
AAAGACTAAAAAAGACAAAGACAAACATAGCAAGAAAGATCGCGCAAAAA
GGTAGGATGAAACCAATAGCTTATAATTCATgataatttattcaaaaaaa
tagtTTAGGCTAATTTTTCCATAATATATGAATGTTGATTCTTCTATTCA
TGATTCAATCCATCAATCGATGAATGCAACGAGTTCGATTTGCTTCATTC
AATTCGCGCATtggattgaatatttttttgacaaatatcAAGAATCAGAA
AAAGGGTGCATTGATAAGTCTTGTGCGAACAGAAGAAATTTAGTTTGTAA
AGTATTTCTTGAAACATGAAATATCTTTGACTGTTAGTTGCTTCAAGGTT
ACTTTCAATGAGTTTTCTGCACTTTGAAACCAAGACGCGCTCAAATgtag
aaaacattattttcttttttttttgaaaagtgcacTAGTCACTACTCTTG
AAGTTATAGGGTTAAAGAACaaagattttatctttttaattttcaatatt
ttttatttttttcactaaatTCCAGTGCAATCTTATCAATCCTTCCGCCC
GTCTCTCATCCAATCAGCGAGCAGGATTTTAACGACTTAGCATCACCAAC
TCTCCTTCAAATCTCCACAAAACAATCACCAACTTCTTCCAATTCAAATC
TCAACGAGCAACCAACGTCACGACCGCGCACGCGCAGTAAATTTTATACT
AACCAATTATTTGACGAATTCGAAGAGCCAGTGACGTTGACATCGACCAA
TCAGATTTCACCACGTTGTCACACCATGAGTGGTGGAGAAACAAGAAAAG
TAAGCTTTCTTTCAAATTAACGTGTTTTGTCATTTAAATTTTGCttatta
aatttatttatttcgaAAGGTAAAATTGTCCAGCCgataatttgaaaaga
aaatcctcAGATTTAGTGGgaacacaggaacgcgggaatagtgcttataa
agagctcttatgaaaaatagaaattgccatGGGAAGAGTGGTTTGGAATG
ACattgtattcagtgaacatatagacATAGATCCTAttgcaagtttaatc
tgcagcgaaatacaacgacgtggtttaatAGTCTATAGATTTAGAAGAAG
ATATTCTGAAAATTATTCTTAGAAATTCAGGTCTAGAAAAATCGACAACT
ACTGAAAAATGATCCTTGACATGAATGAAGTTATGGATCAATATAGGCCT
GCTAATGGTCAGATTTTTTGTAGTTGGAATTGGTAAAAATTATTATCCTT
TCTCGTTCACTTTTTCCATCAGGAAAATGGTAGTGATCCATCCATACAGC
AGCCGAAAATCAGTATCACGGCAACCACGGTGACTAGTTCAGACGAGGAA
AATAATAACGCGAACGACCCTTCACCTTCATCTAGTTCTTCTACAGGTTA
GTAATAAACATTTTTCTTAAACCTTATCCTAAGATACTTTAATTTGGGAG
GGGGTATTTagaggtacaatttccaacGCCCTGgcaattagccccccccc
ccagtgtaCTTAAGTTTGAACATTTTAAAACCcttctaaaagtttttttc
tactGGTAGAAAGTGAGCAAAACCATGAAACTAAGGTTCGGAGAACAAAT
TCCCACCTACTTAAAAAGTGTACCGGAGCACTGATTCAGCGTTTGTCTCG
GGTTTTTCTATAGCTAtcactaaaaatttctcttggGTCAAACATCTAAA
TTTATTTTAAGTTGAAGGAAATGGTATATAATTACTGTTTCACGGTGAAA
CAgctatttaaaatatttaaataaaaacaaagtttccTATACTTCTGACG
TCTTACTTGCGTTTATTGTGTCTGTGTTGCCAATAGTAAAACACACATTT
AGACACCCTTTCTAATTATCATCGTATTTTTTTTATAGATACAGCCAAAG
AGGAAATTGAGAAATTACGAGCGGAAATACATAAACTGAAAATCGACAAA
ATGGATCTCATACGGCAGAACgtggtgattttttttttataaacgtCAGC
ATTTTTCAATTTGGTTCAGTTGCTTTCCTTATTTTAAACCCATTAAGTAC
CATCACTCCgtaacttcaaatttttgatttaaaatgcgTGTACACGCCCC
AATCAAGGAAAAATCCCCATCTCGACTTTTTTTATACGGGcgaagtaaaa
aaaacaacaggCACACTGCGCTCTTAACTCTAGACCGACCGGTACAGgtc
cgagaaaaaaaattgagcgATCTCATATTATACCAGTTGCACTTAATGGG
TTAATGGAGTATACAGgaaataatgttttgatttaaatacGCATGATGTT
TGAACACTGAAATAACTGATTGTAGTTCACTTAAAAAATGTCGACTTTTA
CAACGAGCAGAGAACGTGAACTAAAACAGACAATGTACAGAAATTTTCCT
TACAAAACCAATGTTAACTTGACTTGACCACTGACGCCGACGCTGACCag
tttacagaaaaaaaaacttataaaacacatcaaaagacaCAATCTGACGA
ACATACTTTTGCAAAACACAAAACGAATTATTCCTAAAAgtgaaaagttc
aaaattttgattttattagaAATTGAAAGAACAAAAAAAGTCACGTCAGC
CGAAACAAGCGTGGTCAGGTAAGATAACCTTGGTCTTTTATATAATACAA
CCTCCGGTGCCGGAGGTTTTGTGGAGAAAGTGCCTAAGAAATTTTGCATG
ACTTAAAAAATTggcctaaaaattgaaattctaaaaacaaCTAACATGCG
TCAATCACTGCCTGCTCAATATAACAGATTACATAAATGTTTTACGAatc
tatttttctatttcagATCCATCAACGGGAGATTAAGAAATTAAACGATA
AAACGCAGACCAACGGTGATTATCGTTCTCTATCACTCAAACATTCGTAT
GACCCGAGAAAAATGTACAACGCAACTGCTACTACGTTTGCCGAGTTTGT
TTGACCACGACTGATGTTGAACACGCTAGAATGAAAATgatatatttttg
tgaaatgacAGATATAGTCATCAGTGATGTTAGATTTCTGCATTTTTATC
TTTGTTAAACTAGTCCCGATAGCGATAGGCCAACcgtctttttcaaaaaa
tgtcataacatttgaaaaaaaaatttcagaaatacGCCATTTTGCTGCAA
CTCTTGGGTTTGATGATAAATTTTGTTGAGTTATATATCTACCAAATTAA
TTAGGCTTTTACCTTTCTTTTGTAAATATCTTTataattttgctgacatc
aacATTTATATTTTCTATTTAGTTTGTGTATTTATTTGATATAAAAATGA
TAATATGCTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039855	XLOC_039855	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_394	supercontig	scaffold_394:46070..55730 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.771305	0.385489	0.241043	0	0	0.315458	6.85909	5.598	1.71155	4.02604	0.695763	1.57628	1.39252	1.31328	3.97749	3.13552	5.45387	6.39021	1.67267	0	3.31426	1.83236	1.30549	0.303737	0	0.970521	0	0	0.581548	0.520367

Blast

[Close]

BLAST of TCONS_00063585 vs. Swiss-Prot (Human)
Match: RPGP2 (Rap1 GTPase-activating protein 2 OS=Homo sapiens GN=RAP1GAP2 PE=1 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 6.540e-101
Identity = 191/470 (40.64%), Postives = 273/470 (58.09%), Query Frame = 3

Query:  225 ILYEQQNLKLDSISSIMESTKEQKKKEP-IQEVLACGKPYPMVVLPVEGDYWME-----GTYHILSRDMYDRP----IFPTIDRSRCVLDDDQTVYNYRRNFAGKEHTNYVGNDSKHGPVLMSVLLDSSQPVSERPAPSPPSAQMANPPQRPKEQFKVILRLKNKTIEKTISPSHFSSDCPGPREIMKYMLEDDVDVDRFHPVVVPRASEEIMRFDEHSVSNCYKIGVLHQKHGQISEEDYLQNPEETPALREFLDCIADRVDLKDFESYRGGLDVKHGQTGEHSYYTNYKEREVMFHVSSMIPYKPNDSQQLSRKRHIGNDVVSIVFQEENTPFCPNSIRSHFLHCFIVVQVENPNSEETYYKVSVAAKEGVPKFAPSLPNPCIFKRSDELKDFLLTKILNAENAAVKSEKFSALAERTRSMLLQGIVTDFIAKNEKMXXXXXXXXXXXXXXXHHVKSGSFLSTFRSAI 1604
            +L + Q +KL+      +  K+     P I EV+  G PYP V+LP  G YW+E     GT   L   + +      + P     +  L+       YRR+F GK+H N+    S  G +++SV  + ++ +                     E  +VILR K KT+ + I P    S  P   +I K   +D V + RF+PV+ P+AS+ I+ +DEH V+N +K GV++QK  Q  EE+   N EE+PA +EFLD + D + L+DF+ +RGGLDV HGQTG  S YT +++RE+MFHVS+ +P+   D+QQL RKRHIGND+V+I+FQEENTPF P+ I S+FLH +IVVQVE P +E   YKVSV A+E VP F P LP+P +F++  E ++FLLTK+ NAENA  KS+KF+ L +RTR+ LL  +  +  A  + M     L  G +     +   G FL +F+ AI
Sbjct:   62 MLEKMQGIKLEEQKPGPQKNKDDYIPYPSIDEVVEKGGPYPQVILPQFGGYWIEDPENVGTPTSLGSSICEEEEEDNLSPNTFGYK--LECKGEARAYRRHFLGKDHLNFYCTGSSLGNLILSVKCEEAEGI---------------------EYLRVILRSKLKTVHERI-PLAGLSKLPSVPQIAKAFCDDAVGL-RFNPVLYPKASQMIVSYDEHEVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLDLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTTFRDREIMFHVSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAM-----LGLGPEEDKFENGGHGGFLESFKRAI 501

The following BLAST results are available for this feature:

BLAST of TCONS_00063585 vs. Swiss-Prot (Human)

BLAST of TCONS_00063585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RPGP2	6.540e-101	40.64	Rap1 GTPase-activating protein 2 OS=Homo sapiens G...	[more]

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TCONS_00063585 (transcript) - C. hemisphaerica