TCONS_00063621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063621
Unique NameTCONS_00063621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063621 ID=TCONS_00063621|Name=TCONS_00063621|organism=Clytia hemisphaerica|type=transcript|length=364bp
GTCAAATCGTATCACGATTCTAATACGTTTGACAATACGAATCTAACATC
AATCGACTTGGGAGATGGGAAATTTATACCCGTAACCGACCGTTTTTGCT
ATCTTGGTAGAATCATGTCACGCGATTGTACAGACAATCTTGATATTACA
AACCGTATCAAAAGAGCTAGCAATGCTTTTGGCGCTCTAAGAAAATCGAT
TTTCTCCAATGCAAATGTCTCCAATAAAGTCAAGGCATCTGTTTACGAAA
GCTTAGTGCTTCCGATTGCTCTTTACGGATCAGAATCATGGTCTCTTACA
GAGAAATTATTCAATCTTTTACGTATGTTCCATCGTAATTGTCTCAGAGC
AATGTGTAGAGTTA
Run BLAST on NCBI

protein sequence of TCONS_00063621-protein

>TCONS_00063621-protein ID=TCONS_00063621-protein|Name=TCONS_00063621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
VKSYHDSNTFDNTNLTSIDLGDGKFIPVTDRFCYLGRIMSRDCTDNLDIT
NRIKRASNAFGALRKSIFSNANVSNKVKASVYESLVLPIALYGSESWSLT
EKLFNLLRMFHRNCLRAMCRV
Run BLAST on NCBI

transcript from alignment at scaffold_396:56833..57196

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063621 ID=TCONS_00063621|Name=TCONS_00063621|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at scaffold_396:56833..57196 (Clytia hemisphaerica)
TAACTCTACACATTGCTCTGAGACAATTACGATGGAACATACGTAAAAGA
TTGAATAATTTCTCTGTAAGAGACCATGATTCTGATCCGTAAAGAGCAAT
CGGAAGCACTAAGCTTTCGTAAACAGATGCCTTGACTTTATTGGAGACAT
TTGCATTGGAGAAAATCGATTTTCTTAGAGCGCCAAAAGCATTGCTAGCT
CTTTTGATACGGTTTGTAATATCAAGATTGTCTGTACAATCGCGTGACAT
GATTCTACCAAGATAGCAAAAACGGTCGGTTACGGGTATAAATTTCCCAT
CTCCCAAGTCGATTGATGTTAGATTCGTATTGTCAAACGTATTAGAATCG
TGATACGATTTGAC

Coding sequence (CDS) from alignment at scaffold_396:56833..57196

>TCONS_00063621 ID=TCONS_00063621|Name=TCONS_00063621|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_396:56833..57196 (Clytia hemisphaerica)
AACTCTACACATTGCTCTGAGACAATTACGATGGAACATACGTAAAAGAT
TGAATAATTTCTCTGTAAGAGACCATGATTCTGATCCGTAAAGAGCAATC
GGAAGCACTAAGCTTTCGTAAACAGATGCCTTGACTTTATTGGAGACATT
TGCATTGGAGAAAATCGATTTTCTTAGAGCGCCAAAAGCATTGCTAGCTC
TTTTGATACGGTTTGTAATATCAAGATTGTCTGTACAATCGCGTGACATG
ATTCTACCAAGATAGCAAAAACGGTCGGTTACGGGTATAAATTTCCCATC
TCCCAAGTCGATTGATGTTAGATTCGTATTGTCAAACGTATTAGAATCGT
GATACGATTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039877XLOC_039877Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063621-exon-scaffold_396-1491911889:56833..57196TCONS_00063621-exon-scaffold_396-1491911889:56833..57196Clytia hemisphaericaexon
TCONS_00063621-exon-scaffold_396-1510915933:56833..57196TCONS_00063621-exon-scaffold_396-1510915933:56833..57196Clytia hemisphaericaexon
TCONS_00063621-exon-scaffold_396-1575043694:56833..57196TCONS_00063621-exon-scaffold_396-1575043694:56833..57196Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063621-proteinTCONS_00063621-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_396supercontigscaffold_396:56833..57196 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.339402	0	0	0.329209	0.975658	0.294272	0.550989	0	0.500952	0	0.186876	0.157045	0	0.129971	0.139478	0.17894	0.212026	0	0.305755	0	0	0	0	0.259258	0.482327	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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