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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063637 ID=TCONS_00063637|Name=TCONS_00063637|organism=Clytia hemisphaerica|type=transcript|length=3111bp
CCAGCTATAATTCTTCATTATGATCTCGAACAAGAGAGGAATGAGATTAA
TGGTTCTTTACGTAATCATATTCGCGCTAACATCCACATTTTTCATGTGG
TACAGTATCGACCATCTGCGCATGCGTCAGATCCCGCATCAATCAATGAC
TCAGATCCAACCCTCTTGTAACTGTACCACCtgttcaaaagataaaaatc
ttgGAAACGCAAAGTCCGATTTTCAAAGTGTTCGTGAAGTTGCTAAATCT
CTCAAAGTTGTCACGAATGAGATAGATTATTTCACACAATCAAAAAGCAC
AATGTTTGATCGTTCACTTTCTATTTACGATCCAGAGGACCAGAATATAC
TTCAAACGTTATTTCCAATCGATGAAAATGGTGTCGAAACATATTCTAAA
AATCGTCTCCTAAATCAATTAAATGTACGTTTAAAACACGCAGAACCGAA
ACTCATATTAGTAAATTTCTATGATAACCATTTAACAGCTAGTGCAATAC
ATAATAATGTATGCCCTGTTGACAATTGTCAACTGACCTCAGACAAGAAA
CAATTTCGTAATGCTGATGCAGTCATTTCTCATCAGATTCCTAAACGCAT
CCGAAGACCTGTACAAAAACCAGACCAGATTTGGATATATCACCAACTAG
AATCGCCAGCTACAATACCGTATATTACTGGGAATAAAGGGTCTGTGAAT
TGGACTGCCACTTTTCGTTCAGATAGTGTTTTGCCAACACCTTACGGACT
GTTTATTCGTCATGACCATGTTAACGAAATGCCTCTAAAAGCGGATAAAA
ATTATGCGTTTGGGAAAACTAAAATAGCAGCTTGGTTTGTCTCGAATTGT
GGAGGTTTTAACGGCCGTATGGCGTATGTAAAAGAACTACAGAAATATAT
AAAGATTGATATTTATGGGTTTTGTGGGCCGTTGACATGCAAACGAGGCT
TGGGTGGTGATAAATGTTTAGAAATTTTGAGAAGTGACTACAAATTTTAT
TTATCGTTCGAAAATTCCAATTGTCGGGATTACATTACGGAGAAATTCTT
CCACAATGCTTTGCAGCATGACGTCATACCAATAGTAATGGGAGCACATC
CAGATGATTACAAGCGAGTTGCTCCACCCAATAGTTTCATACACGTGGAC
GAGTTCAACTCGCCAAGACAACTCGCCGAATACATGCACATACTAGATAA
TAATGATGATTTATATAATGAATATTTTCGTTGGAAGGGTACTGGAGAGT
TCATCAATACTAAATTTGTTTGTAGAGTCTGTGCAATGGTTCAGATTGCA
TCTATCTTTCCTATGTGGTATCGAGACATAAGCCAATGGTGGACTGAGGA
ACAATGTGTTCGCCCTGATCAATTCAAATGGTCCACTTGGAGATAAAAAT
GGATTGACATACAAAGATTTCACTAGACGGCATCATTCAAAAGATCACAT
GCGAAACCACCGTTTAACAATAACTGAACCACGTCATGAACTTAGCTTTG
AAACTCTTGACAACCTATGTCCTTTGCTTCACTACCCTAACCACGTTTTT
CATCGTGTATAATTTACGGAACATACCGAACAACAATGGAAATCTCATTC
TGCAAAATATAATTTGTAATGATGACCATGGTAGACGcttctcaaagaaa
atgagaaagaaaTTTGATTCGGCTTCATGGGGAGAAGCTAGACCAGCAGA
TAAGTTTACTAATTTGAAAGACGGTAGAGATGAGGTACCATCTTTAATCA
AGCTTGCAACTCGGCTACCATCTTCAAAAGAGAAAGAGAGCACTGAACCG
GAAGGCTTaaacgaaatcatcaaaacaatcaaGAGAGATATATTTTCGCT
TATTTACAAAGATCCTAGACTACGTTACGATAAAGAACTACAGCCAGATT
TAAGTAAATTTAAAGAACCCTTTTCTTTGTTTAGTGAAGACCAGATATTA
CTGCGATCCATTTTTCGTGCGCGAGAAGGTTCAATCGATTTCGATAATGA
TCGAATTCAAaagcaaatttctttgaaaataaaacgaACGGACCCGTCAA
AAAAACTGATACTTTTGATGTTTAAAAGTAATGATTTGAACGAACATGGA
CTGGTAACGAATAAATGTCATCATAAAGATTGTATATTCACCAATGATGT
TTCAGAAGctgaaaatgctgacgtcattgtttttaaTGGTCCATCAAAAC
AAATGATAGATCACACACGAAATCGAAAGAATCAAATTTGGATTTATCAT
ACTATTGAGTCGCCTGTGCATAACCTAAACTTTGATACACCTGTTCAAAT
AAATTGGACTGCTACGTACAGGTCTGATAGTACCATTCCAACACCATATG
CTAAATTTGTCCCCTTTGAGCATATTGAACGTTTACCTTATGTGGCTGAT
AAGAATTATGCGACAGGAAAAATTAAATTAGCAGCTTTTGTGGTTTCAAA
CTGTGATGCAGAAAATGGCCGATTGGATTATATTTGGGAACTAAAAAAAT
TTGCGTCGGTAGATATTTACGGTGCTTGTGGTGATTTGAAATGCAACAGG
GATGAATGTTTCGAGGTCATcaaaaaagattataaattttACATGGCATT
TGAGAATTCCAATTGCAGAGAATATATCACAGAGAAATTCTTTCGCAATG
CCCTACAGCATGACGTCATACCAATTGTAATGGGAGCACATCCAGATGAT
TACAAACGAGTTGCTCCACCCAATAGTTTCATACATGTGGATGAGTTCAA
CTCGCCAAGACAACTCGCCGAATACATGCACATACTAGATAATAATGACG
ATTTATATAATGAATATTTTCGTTGGAAGGGTACTGGAGAGTTCATCAAT
TCGAAATTTGTTTGTAGAGTCTGTGCAATGGTTCAAGCCACTCCTTCTTT
GCCGTTCGCTTCGTATGATAtcaataaaatgctgacgtcagcaaaacacC
AATGTTTATCTAATGATCCTACCAATAATAAATGGTTTTCgtggaaaaga
aagaaactaaAATAGTTTATATGATATTAGATGTATAAGATAGCGTTTTG
CGTATGATATATttgtttagtttttacaaaagaaTAAACCAGTCAATCCT
GCGGTAGTGAT Run BLAST on NCBI protein sequence of TCONS_00063637-protein >TCONS_00063637-protein ID=TCONS_00063637-protein|Name=TCONS_00063637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MNLALKLLTTYVLCFTTLTTFFIVYNLRNIPNNNGNLILQNIICNDDHGR
RFSKKMRKKFDSASWGEARPADKFTNLKDGRDEVPSLIKLATRLPSSKEK
ESTEPEGLNEIIKTIKRDIFSLIYKDPRLRYDKELQPDLSKFKEPFSLFS
EDQILLRSIFRAREGSIDFDNDRIQKQISLKIKRTDPSKKLILLMFKSND
LNEHGLVTNKCHHKDCIFTNDVSEAENADVIVFNGPSKQMIDHTRNRKNQ
IWIYHTIESPVHNLNFDTPVQINWTATYRSDSTIPTPYAKFVPFEHIERL
PYVADKNYATGKIKLAAFVVSNCDAENGRLDYIWELKKFASVDIYGACGD
LKCNRDECFEVIKKDYKFYMAFENSNCREYITEKFFRNALQHDVIPIVMG
AHPDDYKRVAPPNSFIHVDEFNSPRQLAEYMHILDNNDDLYNEYFRWKGT
GEFINSKFVCRVCAMVQATPSLPFASYDINKMLTSAKHQCLSNDPTNNKW
FSWKRKKLK Run BLAST on NCBI transcript from alignment at scaffold_397:123641..133886+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063637 ID=TCONS_00063637|Name=TCONS_00063637|organism=Clytia hemisphaerica|type=transcript|length=10246bp|location=Sequence derived from alignment at scaffold_397:123641..133886+ (Clytia hemisphaerica)
CCAGCTATAATTCTTCATTATGATCTCGAACAAGAGAGGAATGAGATTAA
TGGTTCTTTACGTAATCATATTCGCGCTAACATCCACATTTTTCATGTGG
TACAGTATCGACCATCTGCGCATGCGTCAGATCCCGCATCAATCAATGAC
TCAGATCCAACCCTCTTGTAACTGTACCACCtgttcaaaagataaaaatc
ttgGAAACGCAAAGTCCGATTTTCAAAGTGTTCGTGAAGTTGCTAAATCT
CTCAAAGTTGTCACGAATGAGATAGATTATTTCACACAATCAAAAAGCAC
AATGTTTGATCGTTCACTTTCTATTTACGATCCAGAGGACCAGAATATAC
TTCAAACGTTATTTCCAATCGATGAAAATGGTGTCGAAACATATTCTAAA
AATCGTCTCCTAAATCAATTAAATGTACGTTTAAAACACGCAGAACCGAA
ACTCATATTAGTAAATTTCTATGATAACCATTTAACAGCTAGTGCAATAC
ATAATAATGTATGCCCTGTTGACAATTGTCAACTGACCTCAGACAAGAAA
CAATTTCGTAATGCTGATGCAGTCATTTCTCATCAGATTCCTAAACGCAT
CCGAAGACCTGTACAAAAACCAGACCAGATTTGGATATATCACCAACTAG
AATCGCCAGCTACAATACCGTATATTACTGGGAATAAAGGGTCTGTGAAT
TGGACTGCCACTTTTCGTTCAGATAGTGTTTTGCCAACACCTTACGGACT
GTTTATTCGTCATGACCATGTTAACGAAATGCCTCTAAAAGCGGATAAAA
ATTATGCGTTTGGGAAAACTAAAATAGCAGCTTGGTTTGTCTCGAATTGT
GGAGGTTTTAACGGCCGTATGGCGTATGTAAAAGAACTACAGAAATATAT
AAAGATTGATATTTATGGGTTTTGTGGGCCGTTGACATGCAAACGAGGCT
TGGGTGGTGATAAATGTTTAGAAATTTTGAGAAGTGACTACAAATTTTAT
TTATCGTTCGAAAATTCCAATTGTCGGGATTACATTACGGAGAAATTCTT
CCACAATGCTTTGCAGTAAGTATCTTTACTCCAAAACTCATCAACATCAA
ATAGAAACTTGGGAGTCATACGAAATTTCGACAAGATTTCAATATGTTCT
AGAAGTAAAATGTGAAAGCTTTCTTTGCTTTACTTTTTCTTCTCTGCTTT
TTCTTAAGATTAAAACTTTTGTGAACAGGGGGTCAATAAAAACACTTTAC
GAAATCATGACTGCTTTTTGACATAAAAGTATCGACACCACCCACTGGCC
TTTTTCACGAAAGTATTCAAATTCAAAATCTTTTTCAAAACCAATTTGAC
ATTCGTTCTTTCTTGATAAGTTCCTGGGGAATTTTCCATTTAAATGAATC
TCTTCTATAGAGAAACTATAAACATGTCATCGCGATGTCCAGAATAACTT
CTTGACTTGCGCCTtccccccccccccccttttgatTCGAACTTTTTCTC
CAAgcgtttttgacatttttgttaaCTTAGTATTTCTTTACTTTCAATCT
TCCAGGCATGACGTCATACCAATAGTAATGGGAGCACATCCAGATGATTA
CAAGCGAGTTGCTCCACCCAATAGTTTCATACACGTGGACGAGTTCAACT
CGCCAAGACAACTCGCCGAATACATGCACATACTAGATAATAATGATGAT
TTATATAATGAATATTTTCGTTGGAAGGGTACTGGAGAGTTCATCAATAC
TAAATTTGTTTGTAGAGTCTGTGCAATGGTTCAGATTGCATCTATCTTTC
CTATGTGGTATCGAGACATAAGCCAATGGTGGACTGAGGAACAATGTGTT
CGCCCTGATCAATTCAAATGGTCCACTTGGAGATAAAAATGGATTGGTAA
GTTCGTTTCATAGTTCACGTTTGTTCATCAGAAAACTTCAAAGCCTTTAT
AACCTTCTTTTCCTACCGTATTTTCAACTTAAGttttttaaggattttgt
ttttacgaagaaattgagtgagaaattttgttttgaagagcaTTGAACTG
TTGCAGATTTGCTAAATCTTTTCAAACAGTGTGTACACAAGACCACCATG
ACCaaattgttaagaacattttaaggctttgcagaccctaaaatacccaa
tttcttaagaaaatggtgaaaataagaacatgttaagaacatttttaggc
ttaaaactcgaaaagttaagaacatccgaagcctttaaaattttggatgt
tcttattaaaaacgtgtataagCGGATTTAAGAcgtttaactttttgaga
ttttgctttATCACGGAAAGTTTGTGCTCTTTCtatagactgggaatcca
gtcgtttataacgtttttgttgaaagcgggaaatttttatgtcgggatat
ggttaaaataaattgatgctcctgtcaagttttctacttcctatttttta
ctgagttaagtcgtcaAGCATGCTAGACTACTCTTTCTACAATAATGTAC
CAACTTCGAAGATCTTTGGGAACTTAGAGGATAAATGACCTTTCTGAATA
TAACTTAAGtttgaataaagtttttttgcttgagTACGGTAAGTACATCC
TAAAAGAAAAGCCATCTAACTTTGAAAAACCAGAAATTTCGGACGTTCTT
TAGAATCCGCAAAGATTTAGAATATTCTACAATCTGTGGAAAAATTTGGC
CTTGATACCGTATTCCCAAGCCGTGGTTTTCGAGTCTGTCCTGCTTATTT
TTAAACGAGATTGTTTAAATATTTTATACTGAAGATGTGTTAcagtgttt
ttcttttgaaatctcATTAGAAGGATTCTGTATAGATACTTTGCTGAGAA
AGAAATGTTTTGCTCAAGAAATAAAATTACGTCTTTACTGTGAAGTTGCT
GAAGTTGTTAAATGTTTAGGTAGTGTGTTATgttgtgatttttcagcttg
tgTGTGTAATATAAAATATTATTTCGGCGATctaaaaaatatctgcaatc
tgattggttaaaaagtacaatatatcttgtattttacatgtaaaaatata
aattgacgaaaagatgttgttgcattgtagcggtagcagcaatctaacgt
cactttacGTCACGCTACAAactgccctgcgcttttttccaacacaaaag
tgtattttttgggtcaccgataaaccagttatcagacatttgctcgctcg
tacaatatggaagtATTGGGCCTAAAATTTCTTCagaaattacacgtttt
tagagtctgcaaagccttagaatgtttttaaattattttggaCTCGAAGA
CCTTGTGCTCTTATACTAAAAACGTGTACCTGAATGAtaaaaaagcaaga
taaaagTGTACATTAAGTTTACTCATTTACGCGTTTCTTTTAacaacatc
caaaatttctCAAGCGCTcagatatttttaactttttgagctttagaGCC
TACTAacaatattcttaaaatgttcttatattcaccattttgaaagtatt
ttcgTGCAATTCCCTTAGAAATTTGGCATTCAAAGTCcaccaagccttaa
aatgtttaacttgttcttgatattttggcaaTCGAATTCATGTTCTTATG
AgatttgttctcataaaaaatgttgttctcaATTTGTTCTCAAGCACATG
aagtttgaattttaaaaataaaaatcaagccTGAGGTATATCCACTCTCA
CGAGCATAACTTGTTATAATTCCTCTcataattaaatatttcccgttttc
caaaagggaaatatttattaaaacgggctttctccgtcataataataatt
tcccgtgtcaaaacgccttccgtacgcccNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTgtcgaaaa
agatgagcatatttatttttattataagcatctactttataagaatcaaa
tcaataactcttgattgaaggcaatatatctttcggtgattagttattag
aaagtaaacaaaggatggcgaaaaagatgagcatacttatttttattata
aagcatctactttataagaatcaaatcaataactcttgattgaaggcaat
atatcttttggtaattagtccttacaaagtaaacaaagtatggcgaaaaa
gatgagcatatttatttttattataagtgtctactttataagaatcaaat
caatttcacaattttcggcgttttcactgtgataacatgtgagcgacaac
ttctctttttgagacgtgagcgaccgtctatcccatgtcatctcaaaagt
aaagttgaaaccaagctttcttcaaacttaaattttatcgataaaacgaa
tttaaaatctacacatgcgtaattttgctCACTTAGTAATataggaagct
ctgcggggcattcttagcgacagctacttgctaatatatgtcaataatga
ccttcatttttaaggaaatatttagtcgcatttttgcgaatcttgttgct
attaattcgattttcattaCACCTTAGATACTGCTGATGCGATTATTAAT
TAAGCTaatttaaactcaaatttcGTGCTATACTGATTCATGTGAGGTAT
TTTAATGAAGTGAATGCTCATTTAGTAAGTTTTGACTAAATTTTAGTTTA
GCTAAGTTTTTCtggtttgaaatttaaaaaatatgtagtttttttttttt
gcttgcatCTTATTTATTCCTGATATTATTAGTAAAAAACCTTCATTTCA
GAGCTGAGAAATTCCATGCGAATTTCATGTGgaatctctttaactcgaat
gtctccttaagtcgaacaagttttatgatcCCTTCCGACAACAATGCCTA
ATAAACCTCACTCCATATCTCAAAGAAATTATATTCCTGAtatgtgttcg
agttatggagactccactgtcgATACGTAGTAGAAGTTGAATATTCACGT
TTAATTTTTATGGTCTTCAAAAGAGATTGATTCGTTGTTCATGTAGTTTC
TCTTTTTATACTTCTTGGCGACTCGTTATTTTCTAAATGAAACATTGTCC
TGCAGTGTCCAACTTGGTGCAGACTGTTTTAAAGGAAAAGCTTAGGAGGA
GCATGTTAAATCTGTATTTTCTTTCTCCTAATGAGAGAACTGTGCTTTTT
ATTTCCCCCAACTGAGATTCGTTTTCTTGTAGCTAATTTAGTACATTCTA
GAAAACGGGAACTGTTATTTCATTTATTCTAGTACAACAGTGTAAAGGGA
AACCACTGAATTTTAACTCGAATgataacatttttaggttttttgaaCCC
CCTTTGATTTCTATTGCATCGCTATATTTTATTGTAAATGGAAATGGTAA
CTTGAAGCTTAGACTGAAATTTAAGagggtttttttttgctttttatcag
CAAACTTCGACCTTTTGACCAAAGAAGACATgttcttgttttcattttgc
aattttttgttcTATATTTGATATATTCACCCCAAGTTTTTTCGTTGCTG
TAAAGGAAAGTCATAACAAAGTTTTGAAGGAATGATTCTGAAGGCTTTtt
cattgagatttcaatattCCATCGAGCTGAGAAAGGACGGAAATGATTCA
ACGTTTCAACTTTTCCCTTGATAATCAAGTTCAACAATATTACAGAACGA
TTCAAGTTGTATGAAAATTATCATTCCTTCTTTTCGTCTTTTTTAGACAT
ACAAAGATTTCACTAGACGGCATCATTCAAAAGATCACATGCGAAACCAC
CGTTTAACAATAACTGAACCACGTCATGAACTTAGCTTTGAAACTCTTGA
CAACCTATGTCCTTTGCTTCACTACCCTAACCACGTTTTTCATCGTGTAT
AATTTACGGAACATACCGAACAACAATGGAAATCTCATTCTGCAAAATAT
AATTTGTAATGATGACCATGGTAGACGcttctcaaagaaaatgagaaaga
aaTTTGATTCGGCTTCATGGGGAGAAGCTAGACCAGCAGATAAGTTTACT
AATTTGAAAGACGGTAGAGATGAGGTACCATCTTTAATCAAGCTTGCAAC
TCGGCTACCATCTTCAAAAGAGAAAGAGAGCACTGAACCGGAAGGCTTaa
acgaaatcatcaaaacaatcaaGAGAGATATATTTTCGCTTATTTACAAA
GATCCTAGACTACGTTACGATAAAGAACTACAGCCAGATTTAAGTAAATT
TAAAGAACCCTTTTCTTTGTTTAGTGAAGACCAGATATTACTGCGATCCA
TTTTTCGTGCGCGAGAAGGTTCAATCGATTTCGATAATGATCGAATTCAA
aagcaaatttctttgaaaataaaacgaACGGACCCGTCAAAAAAACTGAT
ACTTTTGATGTTTAAAAGTAATGATTTGAACGAACATGGACTGGTAACGA
ATAAATGTCATCATAAAGATTGTATATTCACCAATGATGTTTCAGAAGct
gaaaatgctgacgtcattgtttttaaTGGTCCATCAAAACAAATGATAGA
TCACACACGAAATCGAAAGAATCAAATTTGGATTTATCATACTATTGAGT
CGCCTGTGCATAACCTAAACTTTGATACACCTGTTCAAATAAATTGGACT
GCTACGTACAGGTCTGATAGTACCATTCCAACACCATATGCTAAATTTGT
CCCCTTTGAGCATATTGAACGTTTACCTTATGTGGCTGATAAGAATTATG
CGACAGGAAAAATTAAATTAGCAGCTTTTGTGGTTTCAAACTGTGATGCA
GAAAATGGCCGATTGGATTATATTTGGGAACTAAAAAAATTTGCGTCGGT
AGATATTTACGGTGCTTGTGGTGATTTGAAATGCAACAGGGATGAATGTT
TCGAGGTCATcaaaaaagattataaattttACATGGCATTTGAGAATTCC
AATTGCAGAGAATATATCACAGAGAAATTCTTTCGCAATGCCCTACAGTA
AGTAGCTCGATCATTTGCGAATTTAGTTTACATGCCTCACTCGGAATTTT
TGTGTACTAACAATTTAGTACCTTGAAGAAACCTTTTTGGGCGAGAATGC
AACATAGCGAATTTAGGTTTGATGGAGGTTAAAACAAATTTCGGCATAGA
TGAAAATACACATTTTCTAATAAGCAACCCAGTTGCTAAGACTCGAGCTC
TCAAATTAGCCAttttttcactatctcgtaaagtaaaagctttttagata
atctaagcacgacaaacgatagcccttaacccaataagcataaatatggt
ataatatcaagTTTGGTGGTTAGAAAATGAGCTAAGCAGCCCCAGTAGCC
CTCATCCGAAAAATGGAGTTACTTATAAAAGTGCGTAACTGATGTATACC
TTGGCAttcgtcaaaattaaaaatcttcACATTGATTTGTTTCTCCCAAA
AGATAAGGTTCTCACCTCCTATTTGAGTCACTCTAACTGTCAAATGAACA
AACGTGTCAAAAGGAACACTTTTACCCTTCTTGCCTTCTTACACCCTTTT
CTCACAGAACCGGTAGAATCTTTTCAGTCAGTGGagttaaaaataacgga
ctggaAATCAATGGgggttgatattcccatgtttcttatggctggggatt
ttaattccattgttttcgagcccGAAAGTTCAGTGGGGATTGAAAAGATA
GCACAATAtattgcagtgaggatttgcttatctgattattttcagcgggg
gcaaaaatttgagtatATTTTTCACTGTGGACTATATTCTAGCCAAACAA
TCTAGAGGGAaggggttccagtgggtctgtgagaagggggtgtcttctTT
TAGTTGTTTCAAATCTTAACTTCATTAAGATTAATAAAATTTCCTTTTAG
AAGGGCTTGAagtaatttgatttttcaaatctttcccAAACGTATATACT
TTGCAGCCTTTACTTTGGGTGTCTGGAATATCAGCCGAACTTATCTGAGG
GGTTCCCAAACAAAACTTTCATGTTTACCTTCTATCTTGCAGGCATGACG
TCATACCAATTGTAATGGGAGCACATCCAGATGATTACAAACGAGTTGCT
CCACCCAATAGTTTCATACATGTGGATGAGTTCAACTCGCCAAGACAACT
CGCCGAATACATGCACATACTAGATAATAATGACGATTTATATAATGAAT
ATTTTCGTTGGAAGGGTACTGGAGAGTTCATCAATTCGAAATTTGTTTGT
AGAGTCTGTGCAATGGTTCAAGCCACTCCTTCTTTGCCGTTCGCTTCGTA
TGATAtcaataaaatgctgacgtcagcaaaacacCAATGTTTATCTAATG
ATCCTACCAATAATAAATGGTTTTCgtggaaaagaaagaaactaaAATAG
TTTATATGATATTAGATGTATAAGATAGCGTTTTGCGTATGATATATttg
tttagtttttacaaaagaaTAAACCAGTCAATCCTGCGGTAGTGAT Coding sequence (CDS) from alignment at scaffold_397:123641..133886+ >TCONS_00063637 ID=TCONS_00063637|Name=TCONS_00063637|organism=Clytia hemisphaerica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_397:123641..133886+ (Clytia hemisphaerica)
ATGAACTTAGCTTTGAAACTCTTGACAACCTATGTCCTTTGCTTCACTAC
CCTAACCACGTTTTTCATCGTGTATAATTTACGGAACATACCGAACAACA
ATGGAAATCTCATTCTGCAAAATATAATTTGTAATGATGACCATGGTAGA
CGcttctcaaagaaaatgagaaagaaaTTTGATTCGGCTTCATGGGGAGA
AGCTAGACCAGCAGATAAGTTTACTAATTTGAAAGACGGTAGAGATGAGG
TACCATCTTTAATCAAGCTTGCAACTCGGCTACCATCTTCAAAAGAGAAA
GAGAGCACTGAACCGGAAGGCTTaaacgaaatcatcaaaacaatcaaGAG
AGATATATTTTCGCTTATTTACAAAGATCCTAGACTACGTTACGATAAAG
AACTACAGCCAGATTTAAGTAAATTTAAAGAACCCTTTTCTTTGTTTAGT
GAAGACCAGATATTACTGCGATCCATTTTTCGTGCGCGAGAAGGTTCAAT
CGATTTCGATAATGATCGAATTCAAaagcaaatttctttgaaaataaaac
gaACGGACCCGTCAAAAAAACTGATACTTTTGATGTTTAAAAGTAATGAT
TTGAACGAACATGGACTGGTAACGAATAAATGTCATCATAAAGATTGTAT
ATTCACCAATGATGTTTCAGAAGctgaaaatgctgacgtcattgttttta
aTGGTCCATCAAAACAAATGATAGATCACACACGAAATCGAAAGAATCAA
ATTTGGATTTATCATACTATTGAGTCGCCTGTGCATAACCTAAACTTTGA
TACACCTGTTCAAATAAATTGGACTGCTACGTACAGGTCTGATAGTACCA
TTCCAACACCATATGCTAAATTTGTCCCCTTTGAGCATATTGAACGTTTA
CCTTATGTGGCTGATAAGAATTATGCGACAGGAAAAATTAAATTAGCAGC
TTTTGTGGTTTCAAACTGTGATGCAGAAAATGGCCGATTGGATTATATTT
GGGAACTAAAAAAATTTGCGTCGGTAGATATTTACGGTGCTTGTGGTGAT
TTGAAATGCAACAGGGATGAATGTTTCGAGGTCATcaaaaaagattataa
attttACATGGCATTTGAGAATTCCAATTGCAGAGAATATATCACAGAGA
AATTCTTTCGCAATGCCCTACAGCATGACGTCATACCAATTGTAATGGGA
GCACATCCAGATGATTACAAACGAGTTGCTCCACCCAATAGTTTCATACA
TGTGGATGAGTTCAACTCGCCAAGACAACTCGCCGAATACATGCACATAC
TAGATAATAATGACGATTTATATAATGAATATTTTCGTTGGAAGGGTACT
GGAGAGTTCATCAATTCGAAATTTGTTTGTAGAGTCTGTGCAATGGTTCA
AGCCACTCCTTCTTTGCCGTTCGCTTCGTATGATAtcaataaaatgctga
cgtcagcaaaacacCAATGTTTATCTAATGATCCTACCAATAATAAATGG
TTTTCgtggaaaagaaagaaactaaAATAGATGAACTTAGCTTTGAAACT
CTTGACAACCTATGTCCTTTGCTTCACTACCCTAACCACGTTTTTCATCG
TGTATAATTTACGGAACATACCGAACAACAATGGAAATCTCATTCTGCAA
AATATAATTTGTAATGATGACCATGGTAGACGcttctcaaagaaaatgag
aaagaaaTTTGATTCGGCTTCATGGGGAGAAGCTAGACCAGCAGATAAGT
TTACTAATTTGAAAGACGGTAGAGATGAGGTACCATCTTTAATCAAGCTT
GCAACTCGGCTACCATCTTCAAAAGAGAAAGAGAGCACTGAACCGGAAGG
CTTaaacgaaatcatcaaaacaatcaaGAGAGATATATTTTCGCTTATTT
ACAAAGATCCTAGACTACGTTACGATAAAGAACTACAGCCAGATTTAAGT
AAATTTAAAGAACCCTTTTCTTTGTTTAGTGAAGACCAGATATTACTGCG
ATCCATTTTTCGTGCGCGAGAAGGTTCAATCGATTTCGATAATGATCGAA
TTCAAaagcaaatttctttgaaaataaaacgaACGGACCCGTCAAAAAAA
CTGATACTTTTGATGTTTAAAAGTAATGATTTGAACGAACATGGACTGGT
AACGAATAAATGTCATCATAAAGATTGTATATTCACCAATGATGTTTCAG
AAGctgaaaatgctgacgtcattgtttttaaTGGTCCATCAAAACAAATG
ATAGATCACACACGAAATCGAAAGAATCAAATTTGGATTTATCATACTAT
TGAGTCGCCTGTGCATAACCTAAACTTTGATACACCTGTTCAAATAAATT
GGACTGCTACGTACAGGTCTGATAGTACCATTCCAACACCATATGCTAAA
TTTGTCCCCTTTGAGCATATTGAACGTTTACCTTATGTGGCTGATAAGAA
TTATGCGACAGGAAAAATTAAATTAGCAGCTTTTGTGGTTTCAAACTGTG
ATGCAGAAAATGGCCGATTGGATTATATTTGGGAACTAAAAAAATTTGCG
TCGGTAGATATTTACGGTGCTTGTGGTGATTTGAAATGCAACAGGGATGA
ATGTTTCGAGGTCATcaaaaaagattataaattttACATGGCATTTGAGA
ATTCCAATTGCAGAGAATATATCACAGAGAAATTCTTTCGCAATGCCCTA
CAGCATGACGTCATACCAATTGTAATGGGAGCACATCCAGATGATTACAA
ACGAGTTGCTCCACCCAATAGTTTCATACATGTGGATGAGTTCAACTCGC
CAAGACAACTCGCCGAATACATGCACATACTAGATAATAATGACGATTTA
TATAATGAATATTTTCGTTGGAAGGGTACTGGAGAGTTCATCAATTCGAA
ATTTGTTTGTAGAGTCTGTGCAATGGTTCAAGCCACTCCTTCTTTGCCGT
TCGCTTCGTATGATAtcaataaaatgctgacgtcagcaaaacacCAATGT
TTATCTAATGATCCTACCAATAATAAATGGTTTTCgtggaaaagaaagaa
actaaAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063637-exon-scaffold_397-1491911889:123641..124705 | TCONS_00063637-exon-scaffold_397-1491911889:123641..124705 | Clytia hemisphaerica | exon |
| TCONS_00063637-exon-scaffold_397-1510915933:123641..124705 | TCONS_00063637-exon-scaffold_397-1510915933:123641..124705 | Clytia hemisphaerica | exon |
| TCONS_00063637-exon-scaffold_397-1575043694:123641..124705 | TCONS_00063637-exon-scaffold_397-1575043694:123641..124705 | Clytia hemisphaerica | exon |
| TCONS_00063637-exon-scaffold_397-1491911889:125196..125536 | TCONS_00063637-exon-scaffold_397-1491911889:125196..125536 | Clytia hemisphaerica | exon |
| TCONS_00063637-exon-scaffold_397-1510915933:125196..125536 | TCONS_00063637-exon-scaffold_397-1510915933:125196..125536 | Clytia hemisphaerica | exon |
| TCONS_00063637-exon-scaffold_397-1575043694:125196..125536 | TCONS_00063637-exon-scaffold_397-1575043694:125196..125536 | Clytia hemisphaerica | exon |
| TCONS_00063637-exon-scaffold_397-1491911889:131137..132387 | TCONS_00063637-exon-scaffold_397-1491911889:131137..132387 | Clytia hemisphaerica | exon |
| TCONS_00063637-exon-scaffold_397-1510915933:131137..132387 | TCONS_00063637-exon-scaffold_397-1510915933:131137..132387 | Clytia hemisphaerica | exon |
| TCONS_00063637-exon-scaffold_397-1575043694:131137..132387 | TCONS_00063637-exon-scaffold_397-1575043694:131137..132387 | Clytia hemisphaerica | exon |
| TCONS_00063637-exon-scaffold_397-1491911889:133433..133886 | TCONS_00063637-exon-scaffold_397-1491911889:133433..133886 | Clytia hemisphaerica | exon |
| TCONS_00063637-exon-scaffold_397-1510915933:133433..133886 | TCONS_00063637-exon-scaffold_397-1510915933:133433..133886 | Clytia hemisphaerica | exon |
| TCONS_00063637-exon-scaffold_397-1575043694:133433..133886 | TCONS_00063637-exon-scaffold_397-1575043694:133433..133886 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_397 | supercontig | scaffold_397:123641..133886 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008417 | fucosyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008417 |
fucosyltransferase activity |
Blast
BLAST of TCONS_00063637 vs. Swiss-Prot (Human)
Match: FUT6 (Alpha-(1,3)-fucosyltransferase 6 OS=Homo sapiens GN=FUT6 PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 5.444e-47 Identity = 112/317 (35.33%), Postives = 167/317 (52.68%), Query Frame = 2
Query: 437 HAEPKLILVNFYDNHLTASAIHNNVCP-VDNCQLTSDKKQFRNADAVISH----------QIPKRIRRPVQKPDQIWIYHQLESPATIPYITGNKGSVNWTATFRSDSVLPTPYGLFIRHDHVNEMPLKADKNYAFGKTKIAAWFVSNCGGFNGRMAYVKELQKYIKIDIYGFCGPLTCKRGLGGDKCLEILRSDYKFYLSFENSNCRDYITEKFFHNALQHDVIPIVMGAHPDDYKRVAPPNSFIHVDEFNSPRQLAEYMHILDNNDDLYNEYFRWKGT---GEFINTKFVCRVCAMVQIASIFPMWYRDISQWWT 1345
H+ P ++L + N A + + P +C +T+D+K + ADAVI H Q+P+ RR Q+ WI+ +ESP+ + G N T ++RSDS + TPYG + + P N + KT++ AW VSN G + R+ Y + LQ ++K+D+YG + L +E L S YKFYL+FENS DYITEK + NAL+ +P+V+G +Y+R PP++FIHVD+F SP+ LA Y+ LD + Y YFRW+ T F C+ C +Q S + R I+ W+T
Sbjct: 59 HSIPLILLWTWPFNKPIALPRCSEMVPGTADCNITADRKVYPQADAVIVHHREVMYNPSAQLPRSPRRQGQR----WIWFSMESPSHCWQLKAMDGYFNLTMSYRSDSDIFTPYGWL---EPWSGQPAHPPLNLS-AKTELVAWAVSNWGPNSARVRYYQSLQAHLKVDVYG-----RSHKPLPQGTMMETL-SRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALAFCKACWKLQEESRYQT--RGIAAWFT 359 HSP 2 Score: 147.902 bits (372), Expect = 5.816e-38 Identity = 97/296 (32.77%), Postives = 145/296 (48.99%), Query Frame = 1
Query: 2044 PSKKLILLMFKSNDLNEHGLVTNKCHH-----KDCIFTNDVSEAENADVIVFN------GPSKQMIDHTRNRKNQIWIYHTIESPVHNLNFDTP-VQINWTATYRSDSTIPTPYAKFVPFEHIERLPYVADKNYATGKIKLAAFVVSNCDAENGRLDYIWELKKFASVDIYGACGDLKCNRDECFEVIKKDYKFYMAFENSNCREYITEKFFRNALQHDVIPIVMGAHPDDYKRVAPPNSFIHVDEFNSPRQLAEYMHILDNNDDLYNEYFRWKGT---GEFINSKFVCRVCAMVQ 2886
P+ + L++ + N+ + +C DC T D AD ++ + PS Q+ R R+ Q WI+ ++ESP H N T +YRSDS I TPY P+ P + + K +L A+ VSN + R+ Y L+ VD+YG + E + + YKFY+AFENS +YITEK +RNAL+ +P+V+G +Y+R PP++FIHVD+F SP+ LA Y+ LD + Y YFRW+ T F + C+ C +Q
Sbjct: 57 PAHSIPLILLWTWPFNK-PIALPRCSEMVPGTADCNITADRKVYPQADAVIVHHREVMYNPSAQLPRSPR-RQGQRWIWFSMESPSHCWQLKAMDGYFNLTMSYRSDSDIFTPYGWLEPWSGQPAHPPLN----LSAKTELVAWAVSNWGPNSARVRYYQSLQAHLKVDVYGRSHK-PLPQGTMMETLSR-YKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALAFCKACWKLQ 344
The following BLAST results are available for this feature:
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