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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063646 ID=TCONS_00063646|Name=TCONS_00063646|organism=Clytia hemisphaerica|type=transcript|length=1125bp
AAACAATGAACAGCAACCCTCAGCAAAGACAACCAAAAACAAGAAGCGAA
AAACAACGATGAACCAACtaacaaaaagaacaaacaagTTGAAAAGCACA
AACTTATCCAGTCTCGTTGCAACTGCAAATTGGACTGCTCGAAATTCTCA
GAAGACGAACGAGTTAAATTGCACGCAAACTTTTGGGACCTTGACTATAA
CCATCAAAGAGTATGGATTTACAATAACATTGTTACAATGGAACCAGCAA
GAAGATATGCTGACTCAAACAAAAGAAGAGCACGAAAGTATTGGTTTCCG
GATGCCTCTGgagaacaaaaatttgtttgcAAAGATATGTTCATTTCCAC
CTTGGGATACCGTTTCGACAAATTCATTTCAACCGCGTTGAGTACAACCT
CAAATTTTGGAGTGACTTTACAAGATAAAAGGGGTAAACATCCGCCAAAG
CATGCAATGTCAGATTCTGGAAAACAGACTGCCATTCAACATGTTATGTC
ATTCAATCCTCAAATTTCTCATTATCGGCGAGAGCATGCCCCAAATCGGT
TATATCTTCCATCAGAGCTGACCATTCAAGAAATGTACGAGGATTATCTT
GATCAAAGGAAAGAAAACAATGAGAATGCCATGTCATATGTTCAGTATAC
TCGAATTGTGAAAAGTCAAAACATATCGTTTGCAAAGCTTGGAGATGAGG
AGTGTGAGATGTGTGAAAGTCATAAACTTCATTTGAGAGATGTAAAGCAA
AAAGACACTAGCACGAGTGATGACAGGCTCAAAACTAGGATTTTCAATGC
CAAAAGAATTGACAAGGATAAAGACATGTCTTGTGGAAAAGGTAATTGCT
TAGCGTGTGCAGTTTGGCTAGATCACCAAACGAAGTACAGACAGGCTCGC
AAGGCTTATAAAGATGATGGAGCTGctgcaaaaattttcaaagatacGTT
ATTTCTTTCCAGCGACATGCAGAAAGTCATCCTACTGCCTCGACTGCCAG
GCTTCAAGTTAAATTTATTCACCAAGAGATTAGTGGTCATTAATCAAACT
TTTGCTCCACTCAAGAGTGAAGATTTTGAAGTCTGCAAGCCTGTTGGGGT
TCTTTGGCACGAGGGTATTGCTGGG Run BLAST on NCBI protein sequence of TCONS_00063646-protein >TCONS_00063646-protein ID=TCONS_00063646-protein|Name=TCONS_00063646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MEPARRYADSNKRRARKYWFPDASGEQKFVCKDMFISTLGYRFDKFISTA
LSTTSNFGVTLQDKRGKHPPKHAMSDSGKQTAIQHVMSFNPQISHYRREH
APNRLYLPSELTIQEMYEDYLDQRKENNENAMSYVQYTRIVKSQNISFAK
LGDEECEMCESHKLHLRDVKQKDTSTSDDRLKTRIFNAKRIDKDKDMSCG
KGNCLACAVWLDHQTKYRQARKAYKDDGAAAKIFKDTLFLSSDMQKVILL
PRLPGFKLNLFTKRLVVINQTFAPLKSEDFEVCKPVGVLWHEGIAG Run BLAST on NCBI transcript from alignment at scaffold_397:286205..287730+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063646 ID=TCONS_00063646|Name=TCONS_00063646|organism=Clytia hemisphaerica|type=transcript|length=1526bp|location=Sequence derived from alignment at scaffold_397:286205..287730+ (Clytia hemisphaerica)
AAACAATGAACAGCAACCCTCAGCAAAGACAACCAAAAACAAGAAGCGAG
TAAGTGAAATTTGCAATAGTTCATTAATTCTACCTAGCTGTAACAGAAAA
ATGTATgctgtttcaaatattttttggccTCCATTTTTCAAGGGGATGGG
GTGTTTTAGGGTGTCTTAACCATACTTTAAATTTcttctttcgttttcaa
aagcAATTAGCAGATGTTAAATCAgaaatttgaatcctaaaaGTTAAATT
GTCTTTCTTCTTTTGTAGAATAAAAAGCGTTGTAGAAGTTCTGGTGGTAA
GTTGTGTTTAGACATTACTAGTTTAATCAGATGTTTTGTTACAATTGTTA
GATCAAAAGTTTTGAACAGCTTTATCTTGATAGCATTAGTTCGCAACCAC
CTTTGTGTATTTCAGAGATTTCTAAATCTTCATTGTTTTACTATTTCTAG
AAAACAACGATGAACCAACtaacaaaaagaacaaacaagTTGAAAAGCAC
AAACTTATCCAGTCTCGTTGCAACTGCAAATTGGACTGCTCGAAATTCTC
AGAAGACGAACGAGTTAAATTGCACGCAAACTTTTGGGACCTTGACTATA
ACCATCAAAGAGTATGGATTTACAATAACATTGTTACAATGGAACCAGCA
AGAAGATATGCTGACTCAAACAAAAGAAGAGCACGAAAGTATTGGTTTCC
GGATGCCTCTGgagaacaaaaatttgtttgcAAAGATATGTTCATTTCCA
CCTTGGGATACCGTTTCGACAAATTCATTTCAACCGCGTTGAGTACAACC
TCAAATTTTGGAGTGACTTTACAAGATAAAAGGGGTAAACATCCGCCAAA
GCATGCAATGTCAGATTCTGGAAAACAGACTGCCATTCAACATGTTATGT
CATTCAATCCTCAAATTTCTCATTATCGGCGAGAGCATGCCCCAAATCGG
TTATATCTTCCATCAGAGCTGACCATTCAAGAAATGTACGAGGATTATCT
TGATCAAAGGAAAGAAAACAATGAGAATGCCATGTCATATGTTCAGTATA
CTCGAATTGTGAAAAGTCAAAACATATCGTTTGCAAAGCTTGGAGATGAG
GAGTGTGAGATGTGTGAAAGTCATAAACTTCATTTGAGAGATGTAAAGCA
AAAAGACACTAGCACGAGTGATGACAGGCTCAAAACTAGGATTTTCAATG
CCAAAAGAATTGACAAGGATAAAGACATGTCTTGTGGAAAAGGTAATTGC
TTAGCGTGTGCAGTTTGGCTAGATCACCAAACGAAGTACAGACAGGCTCG
CAAGGCTTATAAAGATGATGGAGCTGctgcaaaaattttcaaagatacGT
TATTTCTTTCCAGCGACATGCAGAAAGTCATCCTACTGCCTCGACTGCCA
GGCTTCAAGTTAAATTTATTCACCAAGAGATTAGTGGTCATTAATCAAAC
TTTTGCTCCACTCAAGAGTGAAGATTTTGAAGTCTGCAAGCCTGTTGGGG
TTCTTTGGCACGAGGGTATTGCTGGG Coding sequence (CDS) from alignment at scaffold_397:286205..287730+ >TCONS_00063646 ID=TCONS_00063646|Name=TCONS_00063646|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_397:286205..287730+ (Clytia hemisphaerica)
ATGGAACCAGCAAGAAGATATGCTGACTCAAACAAAAGAAGAGCACGAAA
GTATTGGTTTCCGGATGCCTCTGgagaacaaaaatttgtttgcAAAGATA
TGTTCATTTCCACCTTGGGATACCGTTTCGACAAATTCATTTCAACCGCG
TTGAGTACAACCTCAAATTTTGGAGTGACTTTACAAGATAAAAGGGGTAA
ACATCCGCCAAAGCATGCAATGTCAGATTCTGGAAAACAGACTGCCATTC
AACATGTTATGTCATTCAATCCTCAAATTTCTCATTATCGGCGAGAGCAT
GCCCCAAATCGGTTATATCTTCCATCAGAGCTGACCATTCAAGAAATGTA
CGAGGATTATCTTGATCAAAGGAAAGAAAACAATGAGAATGCCATGTCAT
ATGTTCAGTATACTCGAATTGTGAAAAGTCAAAACATATCGTTTGCAAAG
CTTGGAGATGAGGAGTGTGAGATGTGTGAAAGTCATAAACTTCATTTGAG
AGATGTAAAGCAAAAAGACACTAGCACGAGTGATGACAGGCTCAAAACTA
GGATTTTCAATGCCAAAAGAATTGACAAGGATAAAGACATGTCTTGTGGA
AAAGGTAATTGCTTAGCGTGTGCAGTTTGGCTAGATCACCAAACGAAGTA
CAGACAGGCTCGCAAGGCTTATAAAGATGATGGAGCTGctgcaaaaattt
tcaaagatacGTTATTTCTTTCCAGCGACATGCAGAAAGTCATCCTACTG
CCTCGACTGCCAGGCTTCAAGTTAAATTTATTCACCAAGAGATTAGTGGT
CATTAATCAAACTTTTGCTCCACTCAAGAGTGAAGATTTTGAAGTCTGCA
AGCCTGTTGGGGTTCTTTGGCACGAGGGTATTGCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063646-exon-scaffold_397-1491911889:286205..286253 | TCONS_00063646-exon-scaffold_397-1491911889:286205..286253 | Clytia hemisphaerica | exon |
| TCONS_00063646-exon-scaffold_397-1510915933:286205..286253 | TCONS_00063646-exon-scaffold_397-1510915933:286205..286253 | Clytia hemisphaerica | exon |
| TCONS_00063646-exon-scaffold_397-1575043694:286205..286253 | TCONS_00063646-exon-scaffold_397-1575043694:286205..286253 | Clytia hemisphaerica | exon |
| TCONS_00063646-exon-scaffold_397-1491911889:286655..287730 | TCONS_00063646-exon-scaffold_397-1491911889:286655..287730 | Clytia hemisphaerica | exon |
| TCONS_00063646-exon-scaffold_397-1510915933:286655..287730 | TCONS_00063646-exon-scaffold_397-1510915933:286655..287730 | Clytia hemisphaerica | exon |
| TCONS_00063646-exon-scaffold_397-1575043694:286655..287730 | TCONS_00063646-exon-scaffold_397-1575043694:286655..287730 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_397 | supercontig | scaffold_397:286205..287730 + |
Blast
The following BLAST results are available for this feature:
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