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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063664 ID=TCONS_00063664|Name=TCONS_00063664|organism=Clytia hemisphaerica|type=transcript|length=2051bp
CTTCTATGCATTTTAGattacaaataaaataaatacaaaaacaacaatta
taaaaacaaagacaatttttgattgtttgacttTGGTTAAAGACTATGTA
TAAGAGCGACTATTTCTGTGCTCTCTCGCCCATCGATCAAGCTCACCTTT
TAGAACGGAAAGCAGAACAATGTCTACGTAAGGAGAAACACGAGGATGCC
ATTGCATATCACCAAGACGCTGCCAGAATATTACAAAACGTTTTAAATCA
ATATAAATTGAATGATGCTTGTCCGGATGTTTTGATATCTTTACAATGCC
AAATAAATCATCACAGGAAACAAGATAAATTAATCATGCTCAGAAAGGAA
CAAAGAGAAGCCATGCTTCGTCGAAAAGATCTTAAAACTTCAACACACCA
AGAACCTTTCCAAgatttgattaatttttcaaCAACTTCGATTGATAGTT
ACGATTCTACCGATTTGGTCTCGACTAGTAGTCATTCAATGCATAACAAT
ATGTTACAAGAACATTTGGCTAAGCGAGAAGAAGTGATTAAAACTTTGGG
TGTATTAGTAAGGCAACAACAACATCAGATATTGGTGTTATCAAGCAAAC
TGAAAGAGAAAGATGATGAAAATAAACGTTTAAAACAATTACTGGAGATG
GGCCAAGAAAACCAAAATGAAGACCTCTTTCAAACTTAATAATCCCTTAA
AGGTCTGAGGCCACTTGAaacaattttcatcaaatagaaacattcgaaaa
ctgAAACACGCGAAAAGTTTcactttgatgaaaaagttgctagtGGCTCC
ACCTCAAAAGATGAATTAACAAATCGTAAACAAATCGGTTTCTTAAACAA
TAATGTTTCTTTCTACGATTCTAGGCAGAAACAGTGgcagaaaactttta
aaacttttcattaTAGTTACGTGACGGTCACAAAGATTATTTTGTTGAGA
TTTCTCTAGATTTCTCTGAGGTGGTTGGGCCACTTGAAACAAAGTTTGGC
GATTGAACTGTAACTTGTTTGTGTTTCATTTTGATGACATTTGTTTCAAG
TGACCCCAGACCATAAGTAAATGAATGaaatgataaatgataaaaTGCAA
TGTGATCGGAAAAAGGGAGCAGAAtcggtaaaagtaaaaaatcttcACAG
TTTGTATAAATTTCTATGACCAGATTACAACTCTATTTTCTTCTTATCTG
TCGAGAGTGCTCGATGATATCAGAGcttattcaaattaaaagaaagactt
tgatttattgtttcagaactttaattatttatttatttaaatttaattat
ttagccgggcggcatgaaacttaaagttctgaaacaataaatcaaagtct
ctttcttttaataTGACCAGATTACTAAATTTCTTTCGCAATAAACAAAT
TTTAATTACCTTTGGAATTGAATATCTATCGATTCTGTTCATCTTTTTTC
TTAGACACACTGTATACACTGCATCCATGGTTTCAGAACTTAATTAACAT
TGCAAACGATACATTCTTTATTGAACTGATAAAAAACTTTCGTATTTCTT
CGTTGTTATTTTCACATATCATTTATTCAGCTCGTTATATTATTGAGTAT
AATACTAAGtgattaccttaagtggataaattttcgcgagacgaGAATTT
AgatatttcgcgtggattaaatttcgcgaatcaaagGCCTATATAAACTA
ATTTACCCGTCTTGCAATGCAGGGATTAAATAGTTAATTCCGTTCTTATG
GCCTAAATAATTTCGCGTGGACTGATTTTCGCGAATCAAAGGCCTTCAAA
gttttcgcgtggactaaatttcgccaaaacggacaaaattcgcaaaaatc
gcgaaaattaatccacgcgaaaattgatccacttaaggtattaaCTATAA
TTATTATCTTATTATATAAGGTTAAGACTTGTTGATATTATATTCCAATC
AAAAGATTGATATTTAGTCCTAAAACGGGATTCAAAAACATTACTCCAGT
TTTTCACAAATGCTGGGTAAACGCGACACCCTTCTCGAATTATTTTATTA
T Run BLAST on NCBI protein sequence of TCONS_00063664-protein >TCONS_00063664-protein ID=TCONS_00063664-protein|Name=TCONS_00063664-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MYKSDYFCALSPIDQAHLLERKAEQCLRKEKHEDAIAYHQDAARILQNVL
NQYKLNDACPDVLISLQCQINHHRKQDKLIMLRKEQREAMLRRKDLKTST
HQEPFQDLINFSTTSIDSYDSTDLVSTSSHSMHNNMLQEHLAKREEVIKT
LGVLVRQQQHQILVLSSKLKEKDDENKRLKQLLEMGQENQNEDLFQT Run BLAST on NCBI transcript from alignment at scaffold_397:137936..139986 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063664 ID=TCONS_00063664|Name=TCONS_00063664|organism=Clytia hemisphaerica|type=transcript|length=2051bp|location=Sequence derived from alignment at scaffold_397:137936..139986 (Clytia hemisphaerica)
ATAATAAAATAATTCGAGAAGGGTGTCGCGTTTACCCAGCATTTGTGAAA
AACTGGAGTAATGTTTTTGAATCCCGTTTTAGGACTAAATATCAATCTTT
TGATTGGAATATAATATCAACAAGTCTTAACCTTATATAATAAGATAATA
ATTATAGttaataccttaagtggatcaattttcgcgtggattaattttcg
cgatttttgcgaattttgtccgttttggcgaaatttagtccacgcgaaaa
cTTTGAAGGCCTTTGATTCGCGAAAATCAGTCCACGCGAAATTATTTAGG
CCATAAGAACGGAATTAACTATTTAATCCCTGCATTGCAAGACGGGTAAA
TTAGTTTATATAGGCctttgattcgcgaaatttaatccacgcgaaatatc
TAAATTCtcgtctcgcgaaaatttatccacttaaggtaatcaCTTAGTAT
TATACTCAATAATATAACGAGCTGAATAAATGATATGTGAAAATAACAAC
GAAGAAATACGAAAGTTTTTTATCAGTTCAATAAAGAATGTATCGTTTGC
AATGTTAATTAAGTTCTGAAACCATGGATGCAGTGTATACAGTGTGTCTA
AGAAAAAAGATGAACAGAATCGATAGATATTCAATTCCAAAGGTAATTAA
AATTTGTTTATTGCGAAAGAAATTTAGTAATCTGGTCAtattaaaagaaa
gagactttgatttattgtttcagaactttaagtttcatgccgcccggcta
aataattaaatttaaataaataaataattaaagttctgaaacaataaatc
aaagtctttcttttaatttgaataagCTCTGATATCATCGAGCACTCTCG
ACAGATAAGAAGAAAATAGAGTTGTAATCTGGTCATAGAAATTTATACAA
ACTGTgaagattttttacttttaccgaTTCTGCTCCCTTTTTCCGATCAC
ATTGCAttttatcatttatcatttCATTCATTTACTTATGGTCTGGGGTC
ACTTGAAACAAATGTCATCAAAATGAAACACAAACAAGTTACAGTTCAAT
CGCCAAACTTTGTTTCAAGTGGCCCAACCACCTCAGAGAAATCTAGAGAA
ATCTCAACAAAATAATCTTTGTGACCGTCACGTAACTAtaatgaaaagtt
ttaaaagttttctgcCACTGTTTCTGCCTAGAATCGTAGAAAGAAACATT
ATTGTTTAAGAAACCGATTTGTTTACGATTTGTTAATTCATCTTTTGAGG
TGGAGCCactagcaactttttcatcaaagtgAAACTTTTCGCGTGTTTca
gttttcgaatgtttctatttgatgaaaattgttTCAAGTGGCCTCAGACC
TTTAAGGGATTATTAAGTTTGAAAGAGGTCTTCATTTTGGTTTTCTTGGC
CCATCTCCAGTAATTGTTTTAAACGTTTATTTTCATCATCTTTCTCTTTC
AGTTTGCTTGATAACACCAATATCTGATGTTGTTGTTGCCTTACTAATAC
ACCCAAAGTTTTAATCACTTCTTCTCGCTTAGCCAAATGTTCTTGTAACA
TATTGTTATGCATTGAATGACTACTAGTCGAGACCAAATCGGTAGAATCG
TAACTATCAATCGAAGTTGttgaaaaattaatcaaatcTTGGAAAGGTTC
TTGGTGTGTTGAAGTTTTAAGATCTTTTCGACGAAGCATGGCTTCTCTTT
GTTCCTTTCTGAGCATGATTAATTTATCTTGTTTCCTGTGATGATTTATT
TGGCATTGTAAAGATATCAAAACATCCGGACAAGCATCATTCAATTTATA
TTGATTTAAAACGTTTTGTAATATTCTGGCAGCGTCTTGGTGATATGCAA
TGGCATCCTCGTGTTTCTCCTTACGTAGACATTGTTCTGCTTTCCGTTCT
AAAAGGTGAGCTTGATCGATGGGCGAGAGAGCACAGAAATAGTCGCTCTT
ATACATAGTCTTTAACCAaagtcaaacaatcaaaaattgtctttgttttt
ataattgttgtttttgtatttattttatttgtaatCTAAAATGCATAGAA
G Coding sequence (CDS) from alignment at scaffold_397:137936..139986 >TCONS_00063664 ID=TCONS_00063664|Name=TCONS_00063664|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_397:137936..139986 (Clytia hemisphaerica)
TTAAGTTTGAAAGAGGTCTTCATTTTGGTTTTCTTGGCCCATCTCCAGTA
ATTGTTTTAAACGTTTATTTTCATCATCTTTCTCTTTCAGTTTGCTTGAT
AACACCAATATCTGATGTTGTTGTTGCCTTACTAATACACCCAAAGTTTT
AATCACTTCTTCTCGCTTAGCCAAATGTTCTTGTAACATATTGTTATGCA
TTGAATGACTACTAGTCGAGACCAAATCGGTAGAATCGTAACTATCAATC
GAAGTTGttgaaaaattaatcaaatcTTGGAAAGGTTCTTGGTGTGTTGA
AGTTTTAAGATCTTTTCGACGAAGCATGGCTTCTCTTTGTTCCTTTCTGA
GCATGATTAATTTATCTTGTTTCCTGTGATGATTTATTTGGCATTGTAAA
GATATCAAAACATCCGGACAAGCATCATTCAATTTATATTGATTTAAAAC
GTTTTGTAATATTCTGGCAGCGTCTTGGTGATATGCAATGGCATCCTCGT
GTTTCTCCTTACGTAGACATTGTTCTGCTTTCCGTTCTAAAAGGTGAGCT
TGATCGATGGGCGAGAGAGCACAGAAATAGTCGCTCTTATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063664-exon-scaffold_397-1491911889:137936..139986 | TCONS_00063664-exon-scaffold_397-1491911889:137936..139986 | Clytia hemisphaerica | exon |
| TCONS_00063664-exon-scaffold_397-1510915933:137936..139986 | TCONS_00063664-exon-scaffold_397-1510915933:137936..139986 | Clytia hemisphaerica | exon |
| TCONS_00063664-exon-scaffold_397-1575043694:137936..139986 | TCONS_00063664-exon-scaffold_397-1575043694:137936..139986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_397 | supercontig | scaffold_397:137936..139986 . |
Blast
The following BLAST results are available for this feature:
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