TCONS_00063670 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063670
Unique NameTCONS_00063670
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2194

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063670 ID=TCONS_00063670|Name=TCONS_00063670|organism=Clytia hemisphaerica|type=transcript|length=2194bp
attgaaaataaatacataTCTACAATTTCATATTCACAATTTAGCAGAAA
ATCCTTTATGTTCACAATAGCACTCTtgcaaaagaaaaagcaaagatTTG
ATTAAGCCAACATAACAGTGTCCTATCATTCTTGCTCTGAAGGCTTAATC
AATGAAGaccacaaatacaaagaaaatattcaatgaaagagttAGTGAGA
GCCACTATGTTCTGAAAACATCCTTTGTGTGCACAGAGTTGCATTTAACA
AATGCTCTAGCAGGAGCATCACAAATAATTGCTTTCAATTCGAAGATAAT
AATGGTCCCATCAAATTCTATACCATTTCTCACAAGATCAACAACTTCAT
CCACAAAATCTGAGAGGAAAACTTCTGCTGAAGATGGTTTGCTAGTTCCA
TGATAAATAGCGattggaaaaacaaatttggaTCTAAAAACAGCTCCTAG
AATTGGCCATAGCTGAGACTTGCTGGATTTCGAAATAGGAACTCCGTCAA
TGTTAACAAGAAGTTTCAATTTGTTTTCAGACAAGTCAAGAAGATTTTCT
GATAATAAcaaaagtaaattatttttgattccAAAATATCTGTAAGAGCT
CTCATCTCCAGGGTTGTGGATTATGTCATCAATAGTCCTTTGTGTTTTTA
GTAGTGTTCTGCTGTCTTTAGGAACTTCCACTCCGTAATCTATTAGCGCA
GACAGTAGATCATTGACACAACCACGACTTAATCTATATTTTGTTGCTAC
ATTTCTTAGATTACTCTGTAACTTTGAATTATCGTCTAATTGATTCTCAT
CACAAAAAAGGATTTCTGTAAGATTGTTGTCATTGTCAGAGGATAAAGTT
TCGAAACTAGTATCTAAGGCATGCAATGATTCATCTGTTGAAGAACTGTA
TGTGCTCCCAAAGTCGGACtgttcaaaaatattattcaaattttGTGAAG
TATTTAGGTCAGCAGCAGCACTCTCAACAACTTGAACTTTAGgttgtttt
tctccaaaaagtttttccCTCAACCTCTGCACTTTTCTgcgttttttcct
tttttctgattCTTCCATATATACAAATACCTTTAAATATTACATAAcat
caaaaatagtttcaatAGGTTAGTGATTCAATAACAATAGGTACTTAAAA
CTCCATATCTCCAAATTCAAAAGGGGCTTaagtaaatcttttttttgaaa
tttatgatttttggtttttataaaTCTCTGCCTTGCTGGTGGCTTTCTTT
TGATGTATGTATCATACTGAAGGTCTGAAAATCAAAAGTCAATCAACTTT
TTACAGTTCAAGGGCCTAAGTCTAATAAAATTGAGTATTGGCCTTTATCT
TATTGATGTTTTCTTTATCTAAAATCTAGGTGTAGGTagactttgaaatt
gaaaaggcAGAAAAGTAACCATTCAACTTTCCTACAAATTTATGTTCAGT
TTAAAAAAGGCATGTGTTCACTTCACAAAATTTACTAAGTCACACCTGTT
AGGTAAACAAATATCTACTTTCCAGCAATATGCCTtctaatcaaataaac
aaattaaagctttaagagccattttctaaGAGATCCAGGCAAATTGAGGA
agttttgaaatgatttttagCCCATTTTGAGCATAAAGAGGTCCCAATTT
CTCCATTTCTTGGTAATATGGGATGAATTctacacaaaaataaaaaatga
ggtTCTGAATATTCCTCGGTGTGTAGAAATCATAGGCCGAAACCACAACG
GCTCTTTAAATGCTTAGATGAAATGCTGTGATGGCCACACCCATTGTTGG
cctatgaattttttttgttgacaTGAAAGTAAGTTCAGTTGTTTATCAGA
AAATCTGATAAACTGGTACATGTAGAAGTGAGGCCCAAGTAAGATATTTG
ATCTCAAAAAGGAcagaaatttggcaaaaatgtGGTTTTGGCCTATGATT
TCTAGACACCGAGGAATATTCAGAaccttgttttttattttttgtgtaga
acttaccgggtgacccacgaaaaagttcggacgtttctcggcgtcttgag
gctgaacaaatgtcccaaagtgcttggagttttattatttagaaagtaga
tatcctaacttaaaatccgagccattactttttaaatttgacgcacaagt
tccctagttatgagcttttaaactcaaaattcacttttcggaaa
Run BLAST on NCBI

protein sequence of TCONS_00063670-protein

>TCONS_00063670-protein ID=TCONS_00063670-protein|Name=TCONS_00063670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MEESEKRKKRRKVQRLREKLFGEKQPKVQVVESAAADLNTSQNLNNIFEQ
SDFGSTYSSSTDESLHALDTSFETLSSDNDNNLTEILFCDENQLDDNSKL
QSNLRNVATKYRLSRGCVNDLLSALIDYGVEVPKDSRTLLKTQRTIDDII
HNPGDESSYRYFGIKNNLLLLLSENLLDLSENKLKLLVNIDGVPISKSSK
SQLWPILGAVFRSKFVFPIAIYHGTSKPSSAEVFLSDFVDEVVDLVRNGI
EFDGTIIIFELKAIICDAPARAFVKCNSVHTKDVFRT
Run BLAST on NCBI

transcript from alignment at scaffold_397:198770..200963

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063670 ID=TCONS_00063670|Name=TCONS_00063670|organism=Clytia hemisphaerica|type=transcript|length=2194bp|location=Sequence derived from alignment at scaffold_397:198770..200963 (Clytia hemisphaerica)
tttccgaaaagtgaattttgagtttaaaagctcataactagggaacttgt gcgtcaaatttaaaaagtaatggctcggattttaagttaggatatctact ttctaaataataaaactccaagcactttgggacatttgttcagcctcaag acgccgagaaacgtccgaactttttcgtgggtcacccggtaagttctaca caaaaaataaaaaacaaggtTCTGAATATTCCTCGGTGTCTAGAAATCAT AGGCCAAAACCacatttttgccaaatttctgTCCTTTTTGAGATCAAATA TCTTACTTGGGCCTCACTTCTACATGTACCAGTTTATCAGATTTTCTGAT AAACAACTGAACTTACTTTCAtgtcaacaaaaaaaattcataggCCAACA ATGGGTGTGGCCATCACAGCATTTCATCTAAGCATTTAAAGAGCCGTTGT GGTTTCGGCCTATGATTTCTACACACCGAGGAATATTCAGAacctcattt tttatttttgtgtagAATTCATCCCATATTACCAAGAAATGGAGAAATTG GGACCTCTTTATGCTCAAAATGGGctaaaaatcatttcaaaactTCCTCA ATTTGCCTGGATCTCttagaaaatggctcttaaagctttaatttgtttat ttgattagaAGGCATATTGCTGGAAAGTAGATATTTGTTTACCTAACAGG TGTGACTTAGTAAATTTTGTGAAGTGAACACATGCCTTTTTTAAACTGAA CATAAATTTGTAGGAAAGTTGAATGGTTACTTTTCTgccttttcaatttc aaagtctACCTACACCTAGATTTTAGATAAAGAAAACATCAATAAGATAA AGGCCAATACTCAATTTTATTAGACTTAGGCCCTTGAACTGTAAAAAGTT GATTGACTTTTGATTTTCAGACCTTCAGTATGATACATACATCAAAAGAA AGCCACCAGCAAGGCAGAGAtttataaaaaccaaaaatcataaatttcaa aaaaaagatttacttAAGCCCCTTTTGAATTTGGAGATATGGAGTTTTAA GTACCTATTGTTATTGAATCACTAACCTattgaaactatttttgatgTTA TGTAATATTTAAAGGTATTTGTATATATGGAAGaatcagaaaaaaggaaa aaacgcAGAAAAGTGCAGAGGTTGAGggaaaaactttttggagaaaaaca acCTAAAGTTCAAGTTGTTGAGAGTGCTGCTGCTGACCTAAATACTTCAC aaaatttgaataatatttttgaacaGTCCGACTTTGGGAGCACATACAGT TCTTCAACAGATGAATCATTGCATGCCTTAGATACTAGTTTCGAAACTTT ATCCTCTGACAATGACAACAATCTTACAGAAATCCTTTTTTGTGATGAGA ATCAATTAGACGATAATTCAAAGTTACAGAGTAATCTAAGAAATGTAGCA ACAAAATATAGATTAAGTCGTGGTTGTGTCAATGATCTACTGTCTGCGCT AATAGATTACGGAGTGGAAGTTCCTAAAGACAGCAGAACACTACTAAAAA CACAAAGGACTATTGATGACATAATCCACAACCCTGGAGATGAGAGCTCT TACAGATATTTTggaatcaaaaataatttacttttgTTATTATCAGAAAA TCTTCTTGACTTGTCTGAAAACAAATTGAAACTTCTTGTTAACATTGACG GAGTTCCTATTTCGAAATCCAGCAAGTCTCAGCTATGGCCAATTCTAGGA GCTGTTTTTAGAtccaaatttgtttttccaatCGCTATTTATCATGGAAC TAGCAAACCATCTTCAGCAGAAGTTTTCCTCTCAGATTTTGTGGATGAAG TTGTTGATCTTGTGAGAAATGGTATAGAATTTGATGGGACCATTATTATC TTCGAATTGAAAGCAATTATTTGTGATGCTCCTGCTAGAGCATTTGTTAA ATGCAACTCTGTGCACACAAAGGATGTTTTCAGAACATAGTGGCTCTCAC TaactctttcattgaatattttctttgtatttgtggtCTTCATTGATTAA GCCTTCAGAGCAAGAATGATAGGACACTGTTATGTTGGCTTAATCAAatc tttgctttttcttttgcaAGAGTGCTATTGTGAACATAAAGGATTTTCTG CTAAATTGTGAATATGAAATTGTAGAtatgtatttattttcaat

Coding sequence (CDS) from alignment at scaffold_397:198770..200963

>TCONS_00063670 ID=TCONS_00063670|Name=TCONS_00063670|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_397:198770..200963 (Clytia hemisphaerica)
ATGGAAGaatcagaaaaaaggaaaaaacgcAGAAAAGTGCAGAGGTTGAG
ggaaaaactttttggagaaaaacaacCTAAAGTTCAAGTTGTTGAGAGTG
CTGCTGCTGACCTAAATACTTCACaaaatttgaataatatttttgaacaG
TCCGACTTTGGGAGCACATACAGTTCTTCAACAGATGAATCATTGCATGC
CTTAGATACTAGTTTCGAAACTTTATCCTCTGACAATGACAACAATCTTA
CAGAAATCCTTTTTTGTGATGAGAATCAATTAGACGATAATTCAAAGTTA
CAGAGTAATCTAAGAAATGTAGCAACAAAATATAGATTAAGTCGTGGTTG
TGTCAATGATCTACTGTCTGCGCTAATAGATTACGGAGTGGAAGTTCCTA
AAGACAGCAGAACACTACTAAAAACACAAAGGACTATTGATGACATAATC
CACAACCCTGGAGATGAGAGCTCTTACAGATATTTTggaatcaaaaataa
tttacttttgTTATTATCAGAAAATCTTCTTGACTTGTCTGAAAACAAAT
TGAAACTTCTTGTTAACATTGACGGAGTTCCTATTTCGAAATCCAGCAAG
TCTCAGCTATGGCCAATTCTAGGAGCTGTTTTTAGAtccaaatttgtttt
tccaatCGCTATTTATCATGGAACTAGCAAACCATCTTCAGCAGAAGTTT
TCCTCTCAGATTTTGTGGATGAAGTTGTTGATCTTGTGAGAAATGGTATA
GAATTTGATGGGACCATTATTATCTTCGAATTGAAAGCAATTATTTGTGA
TGCTCCTGCTAGAGCATTTGTTAAATGCAACTCTGTGCACACAAAGGATG
TTTTCAGAACATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039912XLOC_039912Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063670-proteinTCONS_00063670-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063670-exon-scaffold_397-1491911889:198770..200963TCONS_00063670-exon-scaffold_397-1491911889:198770..200963Clytia hemisphaericaexon
TCONS_00063670-exon-scaffold_397-1510915933:198770..200963TCONS_00063670-exon-scaffold_397-1510915933:198770..200963Clytia hemisphaericaexon
TCONS_00063670-exon-scaffold_397-1575043694:198770..200963TCONS_00063670-exon-scaffold_397-1575043694:198770..200963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:198770..200963 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (2.52298 tpm) - - (10.881 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.65229 6.06137 3.69096 2.52298 5.0252 3.30383 4.43313 5.97553 6.40881 5.46446 8.35632 8.05604 6.70115 8.65639 7.9078 6.86312 6.74068 7.40786 9.76714 10.2079 10.881 10.8032 5.06089 6.94467 4.97231 6.08007 8.93223 7.09521 6.88466 6.20732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Sequence
Match NameE-valueIdentityDescription
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