Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063670 ID=TCONS_00063670|Name=TCONS_00063670|organism=Clytia hemisphaerica|type=transcript|length=2194bp attgaaaataaatacataTCTACAATTTCATATTCACAATTTAGCAGAAA ATCCTTTATGTTCACAATAGCACTCTtgcaaaagaaaaagcaaagatTTG ATTAAGCCAACATAACAGTGTCCTATCATTCTTGCTCTGAAGGCTTAATC AATGAAGaccacaaatacaaagaaaatattcaatgaaagagttAGTGAGA GCCACTATGTTCTGAAAACATCCTTTGTGTGCACAGAGTTGCATTTAACA AATGCTCTAGCAGGAGCATCACAAATAATTGCTTTCAATTCGAAGATAAT AATGGTCCCATCAAATTCTATACCATTTCTCACAAGATCAACAACTTCAT CCACAAAATCTGAGAGGAAAACTTCTGCTGAAGATGGTTTGCTAGTTCCA TGATAAATAGCGattggaaaaacaaatttggaTCTAAAAACAGCTCCTAG AATTGGCCATAGCTGAGACTTGCTGGATTTCGAAATAGGAACTCCGTCAA TGTTAACAAGAAGTTTCAATTTGTTTTCAGACAAGTCAAGAAGATTTTCT GATAATAAcaaaagtaaattatttttgattccAAAATATCTGTAAGAGCT CTCATCTCCAGGGTTGTGGATTATGTCATCAATAGTCCTTTGTGTTTTTA GTAGTGTTCTGCTGTCTTTAGGAACTTCCACTCCGTAATCTATTAGCGCA GACAGTAGATCATTGACACAACCACGACTTAATCTATATTTTGTTGCTAC ATTTCTTAGATTACTCTGTAACTTTGAATTATCGTCTAATTGATTCTCAT CACAAAAAAGGATTTCTGTAAGATTGTTGTCATTGTCAGAGGATAAAGTT TCGAAACTAGTATCTAAGGCATGCAATGATTCATCTGTTGAAGAACTGTA TGTGCTCCCAAAGTCGGACtgttcaaaaatattattcaaattttGTGAAG TATTTAGGTCAGCAGCAGCACTCTCAACAACTTGAACTTTAGgttgtttt tctccaaaaagtttttccCTCAACCTCTGCACTTTTCTgcgttttttcct tttttctgattCTTCCATATATACAAATACCTTTAAATATTACATAAcat caaaaatagtttcaatAGGTTAGTGATTCAATAACAATAGGTACTTAAAA CTCCATATCTCCAAATTCAAAAGGGGCTTaagtaaatcttttttttgaaa tttatgatttttggtttttataaaTCTCTGCCTTGCTGGTGGCTTTCTTT TGATGTATGTATCATACTGAAGGTCTGAAAATCAAAAGTCAATCAACTTT TTACAGTTCAAGGGCCTAAGTCTAATAAAATTGAGTATTGGCCTTTATCT TATTGATGTTTTCTTTATCTAAAATCTAGGTGTAGGTagactttgaaatt gaaaaggcAGAAAAGTAACCATTCAACTTTCCTACAAATTTATGTTCAGT TTAAAAAAGGCATGTGTTCACTTCACAAAATTTACTAAGTCACACCTGTT AGGTAAACAAATATCTACTTTCCAGCAATATGCCTtctaatcaaataaac aaattaaagctttaagagccattttctaaGAGATCCAGGCAAATTGAGGA agttttgaaatgatttttagCCCATTTTGAGCATAAAGAGGTCCCAATTT CTCCATTTCTTGGTAATATGGGATGAATTctacacaaaaataaaaaatga ggtTCTGAATATTCCTCGGTGTGTAGAAATCATAGGCCGAAACCACAACG GCTCTTTAAATGCTTAGATGAAATGCTGTGATGGCCACACCCATTGTTGG cctatgaattttttttgttgacaTGAAAGTAAGTTCAGTTGTTTATCAGA AAATCTGATAAACTGGTACATGTAGAAGTGAGGCCCAAGTAAGATATTTG ATCTCAAAAAGGAcagaaatttggcaaaaatgtGGTTTTGGCCTATGATT TCTAGACACCGAGGAATATTCAGAaccttgttttttattttttgtgtaga acttaccgggtgacccacgaaaaagttcggacgtttctcggcgtcttgag gctgaacaaatgtcccaaagtgcttggagttttattatttagaaagtaga tatcctaacttaaaatccgagccattactttttaaatttgacgcacaagt tccctagttatgagcttttaaactcaaaattcacttttcggaaa Run BLAST on NCBI protein sequence of TCONS_00063670-protein >TCONS_00063670-protein ID=TCONS_00063670-protein|Name=TCONS_00063670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MEESEKRKKRRKVQRLREKLFGEKQPKVQVVESAAADLNTSQNLNNIFEQ SDFGSTYSSSTDESLHALDTSFETLSSDNDNNLTEILFCDENQLDDNSKL QSNLRNVATKYRLSRGCVNDLLSALIDYGVEVPKDSRTLLKTQRTIDDII HNPGDESSYRYFGIKNNLLLLLSENLLDLSENKLKLLVNIDGVPISKSSK SQLWPILGAVFRSKFVFPIAIYHGTSKPSSAEVFLSDFVDEVVDLVRNGI EFDGTIIIFELKAIICDAPARAFVKCNSVHTKDVFRT Run BLAST on NCBI transcript from alignment at scaffold_397:198770..200963 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063670 ID=TCONS_00063670|Name=TCONS_00063670|organism=Clytia hemisphaerica|type=transcript|length=2194bp|location=Sequence derived from alignment at scaffold_397:198770..200963 (Clytia hemisphaerica) tttccgaaaagtgaattttgagtttaaaagctcataactagggaacttgt
gcgtcaaatttaaaaagtaatggctcggattttaagttaggatatctact
ttctaaataataaaactccaagcactttgggacatttgttcagcctcaag
acgccgagaaacgtccgaactttttcgtgggtcacccggtaagttctaca
caaaaaataaaaaacaaggtTCTGAATATTCCTCGGTGTCTAGAAATCAT
AGGCCAAAACCacatttttgccaaatttctgTCCTTTTTGAGATCAAATA
TCTTACTTGGGCCTCACTTCTACATGTACCAGTTTATCAGATTTTCTGAT
AAACAACTGAACTTACTTTCAtgtcaacaaaaaaaattcataggCCAACA
ATGGGTGTGGCCATCACAGCATTTCATCTAAGCATTTAAAGAGCCGTTGT
GGTTTCGGCCTATGATTTCTACACACCGAGGAATATTCAGAacctcattt
tttatttttgtgtagAATTCATCCCATATTACCAAGAAATGGAGAAATTG
GGACCTCTTTATGCTCAAAATGGGctaaaaatcatttcaaaactTCCTCA
ATTTGCCTGGATCTCttagaaaatggctcttaaagctttaatttgtttat
ttgattagaAGGCATATTGCTGGAAAGTAGATATTTGTTTACCTAACAGG
TGTGACTTAGTAAATTTTGTGAAGTGAACACATGCCTTTTTTAAACTGAA
CATAAATTTGTAGGAAAGTTGAATGGTTACTTTTCTgccttttcaatttc
aaagtctACCTACACCTAGATTTTAGATAAAGAAAACATCAATAAGATAA
AGGCCAATACTCAATTTTATTAGACTTAGGCCCTTGAACTGTAAAAAGTT
GATTGACTTTTGATTTTCAGACCTTCAGTATGATACATACATCAAAAGAA
AGCCACCAGCAAGGCAGAGAtttataaaaaccaaaaatcataaatttcaa
aaaaaagatttacttAAGCCCCTTTTGAATTTGGAGATATGGAGTTTTAA
GTACCTATTGTTATTGAATCACTAACCTattgaaactatttttgatgTTA
TGTAATATTTAAAGGTATTTGTATATATGGAAGaatcagaaaaaaggaaa
aaacgcAGAAAAGTGCAGAGGTTGAGggaaaaactttttggagaaaaaca
acCTAAAGTTCAAGTTGTTGAGAGTGCTGCTGCTGACCTAAATACTTCAC
aaaatttgaataatatttttgaacaGTCCGACTTTGGGAGCACATACAGT
TCTTCAACAGATGAATCATTGCATGCCTTAGATACTAGTTTCGAAACTTT
ATCCTCTGACAATGACAACAATCTTACAGAAATCCTTTTTTGTGATGAGA
ATCAATTAGACGATAATTCAAAGTTACAGAGTAATCTAAGAAATGTAGCA
ACAAAATATAGATTAAGTCGTGGTTGTGTCAATGATCTACTGTCTGCGCT
AATAGATTACGGAGTGGAAGTTCCTAAAGACAGCAGAACACTACTAAAAA
CACAAAGGACTATTGATGACATAATCCACAACCCTGGAGATGAGAGCTCT
TACAGATATTTTggaatcaaaaataatttacttttgTTATTATCAGAAAA
TCTTCTTGACTTGTCTGAAAACAAATTGAAACTTCTTGTTAACATTGACG
GAGTTCCTATTTCGAAATCCAGCAAGTCTCAGCTATGGCCAATTCTAGGA
GCTGTTTTTAGAtccaaatttgtttttccaatCGCTATTTATCATGGAAC
TAGCAAACCATCTTCAGCAGAAGTTTTCCTCTCAGATTTTGTGGATGAAG
TTGTTGATCTTGTGAGAAATGGTATAGAATTTGATGGGACCATTATTATC
TTCGAATTGAAAGCAATTATTTGTGATGCTCCTGCTAGAGCATTTGTTAA
ATGCAACTCTGTGCACACAAAGGATGTTTTCAGAACATAGTGGCTCTCAC
TaactctttcattgaatattttctttgtatttgtggtCTTCATTGATTAA
GCCTTCAGAGCAAGAATGATAGGACACTGTTATGTTGGCTTAATCAAatc
tttgctttttcttttgcaAGAGTGCTATTGTGAACATAAAGGATTTTCTG
CTAAATTGTGAATATGAAATTGTAGAtatgtatttattttcaat Coding sequence (CDS) from alignment at scaffold_397:198770..200963 >TCONS_00063670 ID=TCONS_00063670|Name=TCONS_00063670|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_397:198770..200963 (Clytia hemisphaerica) ATGGAAGaatcagaaaaaaggaaaaaacgcAGAAAAGTGCAGAGGTTGAG ggaaaaactttttggagaaaaacaacCTAAAGTTCAAGTTGTTGAGAGTG CTGCTGCTGACCTAAATACTTCACaaaatttgaataatatttttgaacaG TCCGACTTTGGGAGCACATACAGTTCTTCAACAGATGAATCATTGCATGC CTTAGATACTAGTTTCGAAACTTTATCCTCTGACAATGACAACAATCTTA CAGAAATCCTTTTTTGTGATGAGAATCAATTAGACGATAATTCAAAGTTA CAGAGTAATCTAAGAAATGTAGCAACAAAATATAGATTAAGTCGTGGTTG TGTCAATGATCTACTGTCTGCGCTAATAGATTACGGAGTGGAAGTTCCTA AAGACAGCAGAACACTACTAAAAACACAAAGGACTATTGATGACATAATC CACAACCCTGGAGATGAGAGCTCTTACAGATATTTTggaatcaaaaataa tttacttttgTTATTATCAGAAAATCTTCTTGACTTGTCTGAAAACAAAT TGAAACTTCTTGTTAACATTGACGGAGTTCCTATTTCGAAATCCAGCAAG TCTCAGCTATGGCCAATTCTAGGAGCTGTTTTTAGAtccaaatttgtttt tccaatCGCTATTTATCATGGAACTAGCAAACCATCTTCAGCAGAAGTTT TCCTCTCAGATTTTGTGGATGAAGTTGTTGATCTTGTGAGAAATGGTATA GAATTTGATGGGACCATTATTATCTTCGAATTGAAAGCAATTATTTGTGA TGCTCCTGCTAGAGCATTTGTTAAATGCAACTCTGTGCACACAAAGGATG TTTTCAGAACATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063670-exon-scaffold_397-1491911889:198770..200963 | TCONS_00063670-exon-scaffold_397-1491911889:198770..200963 | Clytia hemisphaerica | exon |
TCONS_00063670-exon-scaffold_397-1510915933:198770..200963 | TCONS_00063670-exon-scaffold_397-1510915933:198770..200963 | Clytia hemisphaerica | exon |
TCONS_00063670-exon-scaffold_397-1575043694:198770..200963 | TCONS_00063670-exon-scaffold_397-1575043694:198770..200963 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_397 | supercontig | scaffold_397:198770..200963 . |
Blast
The following BLAST results are available for this feature:
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