TCONS_00063676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063676
Unique NameTCONS_00063676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063676 ID=TCONS_00063676|Name=TCONS_00063676|organism=Clytia hemisphaerica|type=transcript|length=714bp
gtctttcttttatttgagCTGTTCTTCTCAATGCtgctaattttttcaaa
catattCTTTGTGATACAGGGAACAAAATGATTTGGTGTCCAATTTTTAA
CATCAACATTCCTAGTATGTGTCCACATTATATCCAATGTTAACTCATAG
TAATCTTCAGTTTGCGGAATAACCATTCTATTAAAGAAGTCCCGATTGAG
GCCACAATGTTTGATTAATGGATAGATCGAATTTATTTTCAGGTTCAATA
TATTGGTCAGCGCAATTAAATGGACAATCAAAGAATATGCTCCATTGTGC
ATTGTGCCCATCACTTcatcttcaaaacaaaagttttcaaaagaacCATA
GTTCAGCATATTAGCATCATCATACAAATCCCTGTTACTGATTAATTCCA
CCAAGACTTTGGTTCTGAGTTCAAACTTAAGTTGATAGTCACCGACAAGA
AGCATTGATACAGAATTGTATAGACAGTTTCCATCACCTAAGCAATAGAT
AGGCATAAACGTTTCTTTCATATCATTTGGTATCAAAATGGATGAAATCT
CGTCTTCTTTAAACCTTTTCCACATTTTACACCTATTTGTATCATCCATT
TTAGAGAATTCACTGATTATACCATCCATTTTATACATATCAATgctctt
cctttttctttctctccATTTCATCAAGTCATTATAATTTTTGCATGAAT
TTCTTGCATCTTTT
Run BLAST on NCBI

protein sequence of TCONS_00063676-protein

>TCONS_00063676-protein ID=TCONS_00063676-protein|Name=TCONS_00063676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
KDARNSCKNYNDLMKWRERKRKSIDMYKMDGIISEFSKMDDTNRCKMWKR
FKEDEISSILIPNDMKETFMPIYCLGDGNCLYNSVSMLLVGDYQLKFELR
TKVLVELISNRDLYDDANMLNYGSFENFCFEDEVMGTMHNGAYSLIVHLI
ALTNILNLKINSIYPLIKHCGLNRDFFNRMVIPQTEDYYELTLDIMWTHT
RNVDVKNWTPNHFVPCITKNMFEKISSIEKNSSNKRK
Run BLAST on NCBI

transcript from alignment at scaffold_397:299508..300221

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063676 ID=TCONS_00063676|Name=TCONS_00063676|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at scaffold_397:299508..300221 (Clytia hemisphaerica)
AAAAGATGCAAGAAATTCATGCAAAAATTATAATGACTTGATGAAATgga
gagaaagaaaaaggaagagcATTGATATGTATAAAATGGATGGTATAATC
AGTGAATTCTCTAAAATGGATGATACAAATAGGTGTAAAATGTGGAAAAG
GTTTAAAGAAGACGAGATTTCATCCATTTTGATACCAAATGATATGAAAG
AAACGTTTATGCCTATCTATTGCTTAGGTGATGGAAACTGTCTATACAAT
TCTGTATCAATGCTTCTTGTCGGTGACTATCAACTTAAGTTTGAACTCAG
AACCAAAGTCTTGGTGGAATTAATCAGTAACAGGGATTTGTATGATGATG
CTAATATGCTGAACTATGgttcttttgaaaacttttgttttgaagatgAA
GTGATGGGCACAATGCACAATGGAGCATATTCTTTGATTGTCCATTTAAT
TGCGCTGACCAATATATTGAACCTGAAAATAAATTCGATCTATCCATTAA
TCAAACATTGTGGCCTCAATCGGGACTTCTTTAATAGAATGGTTATTCCG
CAAACTGAAGATTACTATGAGTTAACATTGGATATAATGTGGACACATAC
TAGGAATGTTGATGTTAAAAATTGGACACCAAATCATTTTGTTCCCTGTA
TCACAAAGaatatgtttgaaaaaattagcaGCATTGAGAAGAACAGctca
aataaaagaaagac

Coding sequence (CDS) from alignment at scaffold_397:299508..300221

>TCONS_00063676 ID=TCONS_00063676|Name=TCONS_00063676|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_397:299508..300221 (Clytia hemisphaerica)
AAAGATGCAAGAAATTCATGCAAAAATTATAATGACTTGATGAAATggag
agaaagaaaaaggaagagcATTGATATGTATAAAATGGATGGTATAATCA
GTGAATTCTCTAAAATGGATGATACAAATAGGTGTAAAATGTGGAAAAGG
TTTAAAGAAGACGAGATTTCATCCATTTTGATACCAAATGATATGAAAGA
AACGTTTATGCCTATCTATTGCTTAGGTGATGGAAACTGTCTATACAATT
CTGTATCAATGCTTCTTGTCGGTGACTATCAACTTAAGTTTGAACTCAGA
ACCAAAGTCTTGGTGGAATTAATCAGTAACAGGGATTTGTATGATGATGC
TAATATGCTGAACTATGgttcttttgaaaacttttgttttgaagatgAAG
TGATGGGCACAATGCACAATGGAGCATATTCTTTGATTGTCCATTTAATT
GCGCTGACCAATATATTGAACCTGAAAATAAATTCGATCTATCCATTAAT
CAAACATTGTGGCCTCAATCGGGACTTCTTTAATAGAATGGTTATTCCGC
AAACTGAAGATTACTATGAGTTAACATTGGATATAATGTGGACACATACT
AGGAATGTTGATGTTAAAAATTGGACACCAAATCATTTTGTTCCCTGTAT
CACAAAGaatatgtttgaaaaaattagcaGCATTGAGAAGAACAGctcaa
ataaaagaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039918XLOC_039918Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063676-proteinTCONS_00063676-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063676-exon-scaffold_397-1491911889:299508..300221TCONS_00063676-exon-scaffold_397-1491911889:299508..300221Clytia hemisphaericaexon
TCONS_00063676-exon-scaffold_397-1510915933:299508..300221TCONS_00063676-exon-scaffold_397-1510915933:299508..300221Clytia hemisphaericaexon
TCONS_00063676-exon-scaffold_397-1575043694:299508..300221TCONS_00063676-exon-scaffold_397-1575043694:299508..300221Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:299508..300221 .
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
Blast
[Close]
BLAST of TCONS_00063676 vs. Swiss-Prot (Human)
Match: VRTN (Vertnin OS=Homo sapiens GN=VRTN PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.073e-16
Identity = 52/170 (30.59%), Postives = 82/170 (48.24%), Query Frame = -2 
Query:  120 DEISSILIPNDMKETFMPIYCLGDGNCLYNSVSMLLVGDYQLKFELRTKVLVELISNRDLY-----DDANMLNYGSFENFC------------------FEDEVMGTMHNGAYSLIVHLIALTNILNLKINSIYPL--IKHCGLNRDFFNRMVIPQTEDYYELTLDIMWT 554
            D ++  L P D     +P+ C G+G+ L+ + SMLL GD  L  ELR + +VE++ +R  Y     D   ML    + + C                  F+ +V  +    ++S + HL AL ++L   I SIYP+  +K     R +FNR++ P+  D+   TL IMW 
Sbjct:   59 DSVALSLYPEDAPRNMLPLVCKGEGSLLFEAASMLLWGDAGLSLELRARTVVEMLLHRHYYLQGMIDSKVMLQAVRY-SLCSEESPEMTSLPPATLEAIFDADVKASCFPSSFSNVWHLYALASVLQRNIYSIYPMRNLK----IRPYFNRVIRPRRCDHVPSTLHIMWA 223
The following BLAST results are available for this feature:
BLAST of TCONS_00063676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VRTN1.073e-1630.59Vertnin OS=Homo sapiens GN=VRTN PE=1 SV=1[more]
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