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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063692 ID=TCONS_00063692|Name=TCONS_00063692|organism=Clytia hemisphaerica|type=transcript|length=223bp
CTGGTATCTTTTCCAGAGATCCAAAGTACAGGAAACTGGTTATTGAACAT
TGCCCTGATGATCGACCTCTGCTTTTTCAGttttgtgCAAACGATCCTGA
GAAATTTGCAGATGCTTGTGAATTAGCAGAACCACATTGTGATGGAGTTG
ATTTAAATCTCGGTTGCCCTCAAGTCATCGCTGCGAGAGGACATTACGGT
GCATTTCTGATGGAAGAGTGGGA Run BLAST on NCBI transcript from alignment at scaffold_398:142494..146594+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063692 ID=TCONS_00063692|Name=TCONS_00063692|organism=Clytia hemisphaerica|type=transcript|length=4101bp|location=Sequence derived from alignment at scaffold_398:142494..146594+ (Clytia hemisphaerica)
CTGGTATCTTTTCCAGAGATCCAAAGTACAGGAAACTGGTTATTGAACAT
TGCCCTGATGATCGACCTCTGCTTTTTCAGGTATGCTAAGTTTTTTTGTA
ATCTGGGTTACATTCAGGTGCTTCGCGCCCTTCTTGATTAAGTTTCATTT
CAGTTCATAACTTTCTACCGCACTTCTTTTCACCCAAAAAGCTTTTCTGA
AATCTTCACTACTGTAACAAAACAGAACAGGTGCGAAAACAGCATCCAAA
AATGTCACAAACTTGTTGACAAATGTTATTATTTCTTCTGTGTCGGAACC
GTAAAAATCGTCACTGAATATTTTAGGTGCTAAGGTAACAAGCTTGTAGT
AAACAATAGAAGGTATCCAGGTTATACCATAAAGGAGTGTTATTTTGACC
GTCAGAGTTGTCAACTTTCTATTCAAAGCTAGTCGATCTATTGTAGCTTG
ACTGTGTTTCTTCTGCTTTCCAAATAACACTCTACTGTTGTNAGGAGTGT
TATTTTGACCGTCAGAGTTGTCAACTTTCTATTCAAAGCTAGTCGATCTA
TTGTAGCTTGACTGTGTTTTTTCTGCCTTCCAAATAACACTCTACTGTTG
TGTTTCATTTTGCGAGCAATGTATGTATAAATGCCAAAATTCAGAGCTAG
AGGGAGAGTGGAGTTGacaagcagcatgaaaatagtCCAAATCCTCGGTT
GGTTGTAATGACATTTTGAATTCTCCAACGATTTTGACCTTTTCATCGGC
ACAAACGGTATCAAACATAATATGATTATGTACAACCACGCCAAACAGCA
TATTGTCTTACACTTTGTCGAAGTCAGCCTGATTTTACGAGATAACGCGT
ATTTGGCTGCGAGAAATCGATCANGCACAAACGGTATCAAACATAATATG
ATTATGTACAACCACGCCAAACAGCATATTGTCTTACACTTTGTCGAAGT
CAGCCTGATTTTACGAGATAAGGCATATTTGGTTGCGAGAAATCGATCGA
TTGCGATCAGTAACACGTTGACACACATCCCGTAAAATGTGACCATGTAA
GACAGGCGCCATGCATCACACACATATGCACACACAGTCTCGCTAAAGTT
GCCGGACCGGAAAACGGCGTAGGTCGGTAGCACGAAAACGCCTTGTAGTA
AATAAGTTACGAGGAGATTTACGATGAATATCATGGGTGGtttttctcgt
aatttttttgttGTCACGATGATATAAATGTATGAACTATTGATGGTTGT
GATTGCGATTGAGAGaattgctgacatcagcactaTCACATCCTTGTATA
ATTCTCTATTcatagtttttccttttttctgttcGTCGTCGTAGATAAAT
AGGACTAAGACTTAGTTTTTCGTCTTACTTTCAAAACTCAATCACTCCTG
GAATACTCATCTCCAGATTGCGTTTTGAATATTATATTGCCATGTTGTTT
CATCAAATCATCATTACGCAAATTNTTCGTCTTACTTTCAAACTCAATCA
CTCCTGGAATACTCATCTCCAGATTGCGTTTTGAATATTATATTGCCATG
TTGTTTCATCAAATCAGcattacagcacctgaccccgagaatgtagtaaa
ccccgagaatgtaggtttctcattttttagcatggtagccctaacgatag
ttcaacttcataaaaagttgtttcagagcatactgttacatattactgat
tatttctagacataaaattttaactagaatttattttttcaggcgaaaat
ctgaatcgaagttgattggatactacccgaactgagacattttaaaaata
aatcctctctaaatcgaaatctattggaattaagttatgatgatagggta
ttttcttactcCTAATGAACTAAAGAAATNaatctgaatcgaagttgatt
ggatactacccgaactgagacatttaaaaaataaatcctctctaaatcga
aatctattggaattaagttatgatgatagggtattttcttactcCTAATG
AACTAaagaaatggggaaaatagtccatttcaatatttattgttctaagt
tagatattttaacgaaaatgtttgacctaccttttgCGTTTAGTTGATAC
CTACAATTTTGGGGCCTTTCAAAACCCGACaaaaaaagtctgtcaaatta
tataaaactttttttctgtactttcataacatgaaagtattacatgagag
atgattaatgttggcattttaagcttttacgacgtgtcccagacccgctg
ggaccccagctcaatcaaaaaatttgcctaagtatggaacaatagaattt
ctatccccattgggaatttagtagaaattttttgacccgatgttggaaaa
gttccaccggggctgtgaggcaggggtgttgttacattattcataTATTT
TAAtacagaatcttcaaccttcaaaataaaaacaaccttcttgtctcttc
ttttcgtcctttcttttacttttcatcatttgtagcacaataaaattaat
atctttgttaattttttgtcagagtatatttctaaagtataaatttcact
tagagaacaaaaatttccgatgaatactgaaatttcgctctcagcaaccg
aatcttttcacctacattctgggggttaaaaagcgaaaaaatccaatttt
gagaataacaaaagctctttagaatattgttttggcataaaatatttcta
aaattttctgttataattaattcaatcgaaaaaatatcaaaaatttacta
ttactagatttaaagccataaaaccaaacctacattctgggggttataac
gaaaatgggagtcaacttcaaggaccaaaaaaattagcttatctatcaaa
agtaatgaaactagcccctgggaaaggattttgggagttcaaaatttcgt
ttaaaacattcaatattttttcaaatgcaaATATACAtctctcaggtctg
attcaaatttcacctacattctcggggtcaggtgctgtacgcAAATTTTA
GAATCGACAACTAGATCatggtaattttgaaaattcgtaAGAAACGGCTG
TAACCAATCTTTTGTCTTTGTCCACTATCGCTTCAACTCAAGACTGAAGA
AACATACCCTTGTTCATCTTATTTAGTTTACAtgaaatatgatcatattt
gttttaattttcaaagtgcTCAAAATTTGTACATTGTAAGCTCTTGTTTT
TAATTAGTGCTAATCAGTTAGTAATCATTATTAGGGCAAATACTactctt
aaaacttgttttggaTAATTGACAAAAACCCCATTTTCTACCCACACTTT
TGGGGAAAATCTAACCCCTTAGCCTGCTCAAATGTCTAGCCCCAAGCTGT
TTATCACGTGCCAGGCAGATGATCATCCATCTCAGAGACTCAGAGAAATT
TCTCTCGTGTGAAATAAAGTTTAGGTTAAAATTAGCTTGGCTTGTATCAG
AGTTAGCCTGAAAATGTCAAGTCAATTAAAAACTTTCCATGTCAAATCAT
TAGTATCGATAGGCTTATGGAAGTCTGTAGTCAAAAAGTATTGACTTCAA
ATGTAAGCAGCTCTCTAGTTTATGTGAAAGCCCcatcttttctgaaaatt
caattgagtTTATGACTATAATACGACctttaatctttttttcagttttg
tgCAAACGATCCTGAGAAATTTGCAGATGCTTGTGAATTAGCAGAACCAC
ATTGTGATGGAGTTGATTTAAATCTCGGTTGCCCTCAAGTCATCGCTGCG
AGAGGTACAAATGTGTAATTTTCAAGGCGATCCCATTTTCTNCCTCAAGT
CATCGCTGCGAGAGGTACAAATGTGTAATTTTCAAGGCGATCCCATTTTC
TAGGGTTGCCTTTGTTGAGTAAACTTTTCATGATATAAATCAATCACTGG
TTTTCTTACAATTTTCGCATGGCAGAAGGGCTCGTCCTGAAAAGGGTAGC
ACTAGAATTATTATAGGAAGACTCTCTAGTGCCTCACATCACGAATATTA
AACAGGCGTTGCATAAGAAGCCGTCTTTCGACGTATTATCATCTCATTCT
TTGTTTTCCATTTTAAGGACATTACGGTGCATTTCTGATGGAAGAGTGGG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063692-exon-scaffold_398-1491911889:142494..142573 | TCONS_00063692-exon-scaffold_398-1491911889:142494..142573 | Clytia hemisphaerica | exon |
| TCONS_00063692-exon-scaffold_398-1510915933:142494..142573 | TCONS_00063692-exon-scaffold_398-1510915933:142494..142573 | Clytia hemisphaerica | exon |
| TCONS_00063692-exon-scaffold_398-1575043694:142494..142573 | TCONS_00063692-exon-scaffold_398-1575043694:142494..142573 | Clytia hemisphaerica | exon |
| TCONS_00063692-exon-scaffold_398-1491911889:146139..146247 | TCONS_00063692-exon-scaffold_398-1491911889:146139..146247 | Clytia hemisphaerica | exon |
| TCONS_00063692-exon-scaffold_398-1510915933:146139..146247 | TCONS_00063692-exon-scaffold_398-1510915933:146139..146247 | Clytia hemisphaerica | exon |
| TCONS_00063692-exon-scaffold_398-1575043694:146139..146247 | TCONS_00063692-exon-scaffold_398-1575043694:146139..146247 | Clytia hemisphaerica | exon |
| TCONS_00063692-exon-scaffold_398-1491911889:146561..146594 | TCONS_00063692-exon-scaffold_398-1491911889:146561..146594 | Clytia hemisphaerica | exon |
| TCONS_00063692-exon-scaffold_398-1510915933:146561..146594 | TCONS_00063692-exon-scaffold_398-1510915933:146561..146594 | Clytia hemisphaerica | exon |
| TCONS_00063692-exon-scaffold_398-1575043694:146561..146594 | TCONS_00063692-exon-scaffold_398-1575043694:146561..146594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_398 | supercontig | scaffold_398:142494..146594 + |
Blast
BLAST of TCONS_00063692 vs. Swiss-Prot (Human)
Match: DUS1L (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.951e-27 Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 3
Query: 6 IFSRDPKYRK--LVIEHCPDDRPLLFQFCANDPEKFADACELAEPHCDGVDLNLGCPQVIAARGHYGAFLMEEW 221
+F RD YRK L E CP+DRPL+ QFCANDPE F A LA+ +CD +DLNLGCPQ+IA RGHYGAFL +EW
Sbjct: 53 VFVRDANYRKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEW 126
The following BLAST results are available for this feature:
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