TCONS_00063694 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063694
Unique NameTCONS_00063694
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length140

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063694 ID=TCONS_00063694|Name=TCONS_00063694|organism=Clytia hemisphaerica|type=transcript|length=140bp
TGCAAAAAGATTGGAACGAGCAGGGGCTAAGatCATCACAGTACACGGTC
GACGTCGTGAACAACGAGGTCCGCTCACCGGTATTGCAAGTTGGGATCAC
ATCAAAGCGGTCAAGGAAGCTGTTTCCGTGCCCGTATTTG
Run BLAST on NCBI

transcript from alignment at scaffold_398:174541..175246+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063694 ID=TCONS_00063694|Name=TCONS_00063694|organism=Clytia hemisphaerica|type=transcript|length=706bp|location=Sequence derived from alignment at scaffold_398:174541..175246+ (Clytia hemisphaerica)
TGCAAAAAGATTGGAACGAGCAGGGGCTAAGGTAAGAAGATTGGAGAGTC
TGTAATAAATGTTGACACTTGGTGCTCAGAGTCATTCACAATAGTACAAG
AAAAAAGCATGACCATTGATATCCTGCTGTATGCTTTATTTTCTAACTAG
TTGAGAGAAAATAAATACAAACTCTTGATGACGGAATTAATTTGTGGAGC
TTTGGAGATTTTGCTCGCCAGCTGGAAAGTACTACTATAGTTTTCTACTG
AACTAACTATAGACATACAAACAGAATAGATATTTTTTGTGTAGTCTAGG
ATTTTTAGACAGTCTTGCGATTACTTTCACGGAGTCCAGGCTATCTAAGA
TCTGAACGGAACATTTGAAAGAGTGGGCCTTTGTTTTAAGCGCTCGCACA
TTGACCATTCGGCTTCTTATTGATAGACCTAAAGAGAAAGGGAACAGGTT
TTGGCCGGAAATAAATAGTCCTACAGCTACGATCACTGTGCACATAAATC
AAACACGGTACACAGACCAGACCACATCATATATACCTGCATTATCAGAG
CTAACGAAGTAAAAATGCACCATTACCTAAAcgttcttttttcttagatC
ATCACAGTACACGGTCGACGTCGTGAACAACGAGGTCCGCTCACCGGTAT
TGCAAGTTGGGATCACATCAAAGCGGTCAAGGAAGCTGTTTCCGTGCCCG
TATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039921XLOC_039921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063694-exon-scaffold_398-1491911889:174541..174571TCONS_00063694-exon-scaffold_398-1491911889:174541..174571Clytia hemisphaericaexon
TCONS_00063694-exon-scaffold_398-1510915933:174541..174571TCONS_00063694-exon-scaffold_398-1510915933:174541..174571Clytia hemisphaericaexon
TCONS_00063694-exon-scaffold_398-1575043694:174541..174571TCONS_00063694-exon-scaffold_398-1575043694:174541..174571Clytia hemisphaericaexon
TCONS_00063694-exon-scaffold_398-1491911889:175138..175246TCONS_00063694-exon-scaffold_398-1491911889:175138..175246Clytia hemisphaericaexon
TCONS_00063694-exon-scaffold_398-1510915933:175138..175246TCONS_00063694-exon-scaffold_398-1510915933:175138..175246Clytia hemisphaericaexon
TCONS_00063694-exon-scaffold_398-1575043694:175138..175246TCONS_00063694-exon-scaffold_398-1575043694:175138..175246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_398supercontigscaffold_398:174541..175246 +
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00063694 vs. Swiss-Prot (Human)
Match: DUS1L (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.887e-16
Identity = 29/46 (63.04%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:    2 AKRLERAGAKIITVHGRRREQRGPLTGIASWDHIKAVKEAVSVPVF 139
            A+ LE+AG +++TVHGR +EQ+GPL+G ASW+HIKAV++AV++PVF
Sbjct:  161 AQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVF 206
The following BLAST results are available for this feature:
BLAST of TCONS_00063694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS1L7.887e-1663.04tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-li... [more]
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