TCONS_00063706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063706
Unique NameTCONS_00063706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063706 ID=TCONS_00063706|Name=TCONS_00063706|organism=Clytia hemisphaerica|type=transcript|length=444bp
TGGACCAATATTCATTGATGGTAGATCTGATGTACTCATCTTTGTTTTTG
TGTAGAATGAGAGGGAGAAGGGGTGCTCGAGGTCCTTGATTTCGGTTGCC
ACCATAGAGCAAAGTGTGACGGGGTATTGACAGGGCCTTTGCAATGTTGC
GGTTAATGAGGGATAGTGGGTATCCACGAGCCAGAAAAACTTTGGTAAGG
AAATTCAGTTCTTTTGTTAGATTACGGTCATCACTGATTATGAGGTTGTA
TCGTAGTCCTTGTGAGTATATAATTCTTTCTTTGACATGTAGGGGGTGAT
TTGATTGAAAGTGAAGGAATTGGGAGCGGTCCATGGGTTTTCTGTATATA
GAAGTGTGGAACTGATGGTTAGAGATAGAAATTGAGAGGTCTAGGAAGTT
AATTCTTTCTTTGGAATGTTCGAATGTGAATTTTATTGTGTCAT
Run BLAST on NCBI

transcript from alignment at scaffold_398:247126..247569

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063706 ID=TCONS_00063706|Name=TCONS_00063706|organism=Clytia hemisphaerica|type=transcript|length=444bp|location=Sequence derived from alignment at scaffold_398:247126..247569 (Clytia hemisphaerica)
ATGACACAATAAAATTCACATTCGAACATTCCAAAGAAAGAATTAACTTC
CTAGACCTCTCAATTTCTATCTCTAACCATCAGTTCCACACTTCTATATA
CAGAAAACCCATGGACCGCTCCCAATTCCTTCACTTTCAATCAAATCACC
CCCTACATGTCAAAGAAAGAATTATATACTCACAAGGACTACGATACAAC
CTCATAATCAGTGATGACCGTAATCTAACAAAAGAACTGAATTTCCTTAC
CAAAGTTTTTCTGGCTCGTGGATACCCACTATCCCTCATTAACCGCAACA
TTGCAAAGGCCCTGTCAATACCCCGTCACACTTTGCTCTATGGTGGCAAC
CGAAATCAAGGACCTCGAGCACCCCTTCTCCCTCTCATTCTACACAAAAA
CAAAGATGAGTACATCAGATCTACCATCAATGAATATTGGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039932XLOC_039932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063706-exon-scaffold_398-1491911889:247126..247569TCONS_00063706-exon-scaffold_398-1491911889:247126..247569Clytia hemisphaericaexon
TCONS_00063706-exon-scaffold_398-1510915933:247126..247569TCONS_00063706-exon-scaffold_398-1510915933:247126..247569Clytia hemisphaericaexon
TCONS_00063706-exon-scaffold_398-1575043694:247126..247569TCONS_00063706-exon-scaffold_398-1575043694:247126..247569Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_398supercontigscaffold_398:247126..247569 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.669249	0.0631625	0.976553	0.52405	0.857356	0.705165	0.316263	0.225075	0.474516	0	0.611808	0.158122	0.20081	0	0.394937	0	0	0	0.641895	0.167934	0.291931	0.584352	0.336496	0.249124	0.588474	0	0.207009	0	0.335128	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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