TCONS_00063708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063708
Unique NameTCONS_00063708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063708 ID=TCONS_00063708|Name=TCONS_00063708|organism=Clytia hemisphaerica|type=transcript|length=932bp
GGCGATATATGTGCGAGGtgcttttttaaaaaacaattttatttgtACAT
AAAAGTCGACACTGTGTGTCATataatttaatgaaattaaataaaaaaat
tcaaattataattttaggaaaatgaaaTAACGCATTACCTAATTACACAA
TAGgtatgttttctttcaaaaaactgCATGTAACAATCCTAGTGTGGGAC
AGTTTTTACCAAAGCTGAACTCATCCGTTGTCTCGCAAGTTTTAAAAGTC
AGTTTCAcagatttgaagattttttgtgATTGTTTACAATGGCTACGAGA
TGCATACATGCTTACGAGAAACAGCATTAAACTGTGAAACATTGGTTACT
GACTGTTTGGATCAAATCATTTACATTATAACATGTTTGCTGTGGAAATC
TTATCAATTTGTTCTTGATTTGGTCATGTAGCTTTAATAAGCATTAATTA
AATTATCTTCGTTCGGTTTTAACATCAAAGAAACTTCTTGTATCTTTTTC
ACGCTAGCAGAACAAACAACAAATTCGTCAAATTTTGCTTCACGACGGAA
AATCCTCTTTTTATAACTTTTGTAATGAAGTCCATCTGAGACAGAAGAAC
AATACCGTAAAAAAAGTCTCTAATTTGTTCTTAGTTTGAACCTGTAGCTT
TAAACATCAATTGAATTTCCTGAATCGCGTCACTGTCGACGTGCGTCCTC
CAGCGGAGAAAATTGGGATGGTTCGGGTCAAGGTACATACAATCATTTAA
CCAGAACGGACCGTGACCGCGTGTAATACAAGACGATCCATAACTTCGAT
CATATGTATGGAATTTCTTTCCGTTCAGGTTTTGTGGACCCGTCAAAGAT
TCTATCCCGGTCAGTAGAGTTTCATTGAAATGAAGAGTATAATCTTGACT
CTCGTTATCGATGTAAAATTCACCGTATCTTG
Run BLAST on NCBI

protein sequence of TCONS_00063708-protein

>TCONS_00063708-protein ID=TCONS_00063708-protein|Name=TCONS_00063708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
RYGEFYIDNESQDYTLHFNETLLTGIESLTGPQNLNGKKFHTYDRSYGSS
CITRGHGPFWLNDCMYLDPNHPNFLRWRTHVDSDAIQEIQLMFKATGSN
Run BLAST on NCBI

transcript from alignment at scaffold_398:261393..262324

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063708 ID=TCONS_00063708|Name=TCONS_00063708|organism=Clytia hemisphaerica|type=transcript|length=932bp|location=Sequence derived from alignment at scaffold_398:261393..262324 (Clytia hemisphaerica)
CAAGATACGGTGAATTTTACATCGATAACGAGAGTCAAGATTATACTCTT
CATTTCAATGAAACTCTACTGACCGGGATAGAATCTTTGACGGGTCCACA
AAACCTGAACGGAAAGAAATTCCATACATATGATCGAAGTTATGGATCGT
CTTGTATTACACGCGGTCACGGTCCGTTCTGGTTAAATGATTGTATGTAC
CTTGACCCGAACCATCCCAATTTTCTCCGCTGGAGGACGCACGTCGACAG
TGACGCGATTCAGGAAATTCAATTGATGTTTAAAGCTACAGGTTCAAACT
AAGAACAAATTAGAGACTTTTTTTACGGTATTGTTCTTCTGTCTCAGATG
GACTTCATTACAAAAGTTATAAAAAGAGGATTTTCCGTCGTGAAGCAAAA
TTTGACGAATTTGTTGTTTGTTCTGCTAGCGTGAAAAAGATACAAGAAGT
TTCTTTGATGTTAAAACCGAACGAAGATAATTTAATTAATGCTTATTAAA
GCTACATGACCAAATCAAGAACAAATTGATAAGATTTCCACAGCAAACAT
GTTATAATGTAAATGATTTGATCCAAACAGTCAGTAACCAATGTTTCACA
GTTTAATGCTGTTTCTCGTAAGCATGTATGCATCTCGTAGCCATTGTAAA
CAATcacaaaaaatcttcaaatctgTGAAACTGACTTTTAAAACTTGCGA
GACAACGGATGAGTTCAGCTTTGGTAAAAACTGTCCCACACTAGGATTGT
TACATGcagttttttgaaagaaaacatacCTATTGTGTAATTAGGTAATG
CGTTAtttcattttcctaaaattataatttgaatttttttatttaatttc
attaaattatATGACACACAGTGTCGACTTTTATGTacaaataaaattgt
tttttaaaaaagcaCCTCGCACATATATCGCC

Coding sequence (CDS) from alignment at scaffold_398:261393..262324

>TCONS_00063708 ID=TCONS_00063708|Name=TCONS_00063708|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_398:261393..262324 (Clytia hemisphaerica)
AGATACGGTGAATTTTACATCGATAACGAGAGTCAAGATTATACTCTTCA
TTTCAATGAAACTCTACTGACCGGGATAGAATCTTTGACGGGTCCACAAA
ACCTGAACGGAAAGAAATTCCATACATATGATCGAAGTTATGGATCGTCT
TGTATTACACGCGGTCACGGTCCGTTCTGGTTAAATGATTGTATGTACCT
TGACCCGAACCATCCCAATTTTCTCCGCTGGAGGACGCACGTCGACAGTG
ACGCGATTCAGGAAATTCAATTGATGTTTAAAGCTACAGGTTCAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039934XLOC_039934Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063708-proteinTCONS_00063708-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063708-exon-scaffold_398-1491911889:261393..262324TCONS_00063708-exon-scaffold_398-1491911889:261393..262324Clytia hemisphaericaexon
TCONS_00063708-exon-scaffold_398-1510915933:261393..262324TCONS_00063708-exon-scaffold_398-1510915933:261393..262324Clytia hemisphaericaexon
TCONS_00063708-exon-scaffold_398-1575043694:261393..262324TCONS_00063708-exon-scaffold_398-1575043694:261393..262324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_398supercontigscaffold_398:261393..262324 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0981404	0	0.0555598	0.0585493	0.0661739	0.0522915	0.0630875	0.118123	0.324286	0.197728	0	0.186001	3.74442	2.17471	0.135582	0.089706	0	0.0782616	2.23492	2.38924	0.332107	0.355065	0	0	0.105369	0.517216	0	0	0	0.0554903
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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