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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063714 ID=TCONS_00063714|Name=TCONS_00063714|organism=Clytia hemisphaerica|type=transcript|length=1023bp
TGCGTGTCAACTAGAAGCAGGCCATCAGAAAGATGGCAATTATTATTGCT
GGTGTTGTGATATGAAGGCCTCTCGTAGCGCTGACCTGGCCTATGTATTC
GGGTGCACCAGACAATCACTCCAAGATAAAATAAACAGATTAACCAAAAC
TAGcTATGGAAAACAATGTGTACATAATCAAAAAATGTCGATACTTGATG
GAATTCCAAAGGTAGAGATCGtggaagaattgaaaaaacgtGGCGTCCAA
GTCAACAAAGACCAAAATAAAGACGTGGTTTTGAAACAGCTTGAAGATAT
TTTCGCAGGAGTCCAACACCTTCCAGCATTACTGTTCGAATCGGGAAAGA
CAAGCCTTGAAAAGGTCGGTTTGGAATCGTACGAAGTACTTGCATGCGAC
CCTTTACACACCTTCAAAGGTTTGACGACCAATCTTTACCAAGAGATCCC
TCGTCACCTTCAGggcgaagaaaaaaatctttttaaggaCTCGGCGCGAG
CATCCTTTCATGGCAAAGAGGCAAAAAATGGTGGAGACTACAGGCGAAGC
CTGGTGGACCTGACGATTTACTTGGATGGAGAAATGACTGATGCGTACGT
CAAACTCATGAGGCAGCTCGCTGAATTACAAGAAATTGCATATTCCGGTG
AAGAAAAGCGTACAGCCAAGTCGATTTTACGCTTCCACAACGTGTCATTC
TTGCACGCAGACTTGATGATTGAGCTTTTCGAAAAGCAGAAATCCATGAG
CCGAAGAAAACTGTTTGGACAGTACAACCATTCGCTGACCAGTCATGCGC
CAATCCAATATCGGATTCTGGATTTGGTTTCGGCAAATACTGAGCAAGAG
GAGGCTGCATTCAATTTCATGAAGGAAGTCAGTAAACATGCTTCCAATCA
CCATCCCGATAATATACTGCTGACCTGCTTTCTTCGTATCCAAATCCGAG
AAGACTGGCAACGTCACTTGGGCATCCTGAAAAAGGAAACAAGAAATGCT
ATTAGCAAACACGGCGATTTGTT Run BLAST on NCBI transcript from alignment at scaffold_399:76697..79555+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063714 ID=TCONS_00063714|Name=TCONS_00063714|organism=Clytia hemisphaerica|type=transcript|length=2859bp|location=Sequence derived from alignment at scaffold_399:76697..79555+ (Clytia hemisphaerica)
TGCGTGTCAACTAGAAGCAGGCCATCAGAAAGATGGCAATTATTATTGCT
GGTGTTGTGATATGAAGGCCTCTCGTAGCGCTGACCTGGCCTATGTATTC
GGGTGCACCAGACATTCACTCCAAGATAAAATAAACAGATTAACCAAAAC
TAGGTAAGGAATTAAAGAGGGTCAACTTTTAACAGGCTTTTCATGTGTGC
GACCGCGGAAGTAGATCAGAAAAGCTTAATATAAATCAATGGTGATTTAG
GGGGAGGTCTGAAGTGGCAAAGTAATGTTAaacactttctttttatttta
tcaaaaattttagcTATGGAAAACAATGTGTACATAATAAAAAAATGTCG
ATACTTGATGGAATTCCAAAGGTAGCGATCGTGTAAGAATTGAAAAAACC
AGGCGTCCAAGTCAACAAAGACCAAAATAAAGACGTGGTTTTGAAACAGC
TGGAAGATATTTTCGCAGGTATacaccatggaggtataaagaaacaggag
aagtatgctattgtaaccaagctcgccctacgattaaaaaagttacgatg
tatgcatgctcataatctcataNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgg
gcgagcttagaatttcttttgatacattttataaaagaaatcaaaagact
ttaacgaccaattaccgacacattcaactcctgtttttctttatacctct
atgtaTACACGATGTTTCAATCCGAAAATGTTGAagcaaaaacatgaaaa
cagcacaaaacgttgtttttAATTATCGTCTCGGTTTCTTGTTTAGGAGT
CCAACACCTTCCAGCATTACTGTTCGAATCGGGAAAGACAAGCCTTGAAA
AGGTCGGTTTGAATCATACGAAGTACTTGGAAGCGACCCTTTACACACCT
TCAAAGGTTTGACGACCAATCTTTACCAAGAGATCCCTCGTCACCTTCAG
ggcgaagaaaaaaatctttttaaggaCTCGGCGCGAGCATCNCGTATTCG
GGTGCACCAGACAATCACTCCAAGATAAAATAAACAGATTAACCAAAACT
AGGTAAGGAATTAAAGAGGGCCAACTTTTAGCAGGCTTTTCATGTGTGCG
AAGTAGACCAGAAAAGCTTAATATAAATCAAATGTGATTTAGGGGGAGGT
TTGAAGTGGCAAAGTAATGTTCaacactttctttttattttatcaaaaat
tttagcTATGGAAAACAATGTGTACATAATCAAAAAATGTCGATACTTGA
TGGAATTCCAAAGGTAGAGATCGtggaagaattgaaaaaacgtGGCGTCC
AAGTCAACAAAGACCAAAATAAAGACGTGGTTTTGAAACAGCTTGAAGAT
ATTTTCGCAGGTATACACGATGTTTCAATCCGAAAATGTTGAagcaaaaa
catgaaaacagcACTTTTAATTATCTTCTCGGTTTCTTGTTTAGGAGTCC
AACACCTTCCAGCATTACTGTTCGAATCGGGAAAGACAAGCCTTGAAAAG
GTCGGTTTGGAATCGTACGAAGTACTTGCATGCGACCCTTTACACACCTT
CAAAGGTTTGACGACCAATCTTTACCAAGAGATCCCTCGTCACCTTCAGg
gcgaagaaaaaaatctttttaaggaCTCGGCGCGAGCATCCTTTCATGGC
AAAGAGGCAAAAAATGGTGGAGACTACAGGCGAAGCCTGGTGGACCTGAC
GATTTACTTGGATGGAGAAATGACTGATGCGTACGTCAAACTCATGAGGC
AGCTCGCTGAATTACAAGAAATTGCATATTCCGGTGAAGAAAAGCGTACA
GCCAAGTCGATTTTACGCTTCCACAACGTGTCATTCTTGCACGCAGACTT
GATGATTGAGCTTTTCGAAAAGCAGAAATCCATGAGCCGAAGAAAACTGT
TTGGACAGTACAACCATTCGCTGACCAGTCATGCGCCAATCCAATATCGG
ATTCTGGATTTGGTTTCGGCAAATACTGAGCAAGAGGAGGCTGCATTCAA
TTTCATGAAGGAAGTCAGTAAACATGCTTCCAATCACCATCCCGATAATA
TACTGCTGACCTGCTTTCTTCGTATCCAAATCCGAGAAGACTGGCAACGT
CACTTGGGCATCCTGAAAAAGGAAACAAGAAATGCTATTAGCAAACACGG
CGATTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063714-exon-scaffold_399-1491911889:76697..76809 | TCONS_00063714-exon-scaffold_399-1491911889:76697..76809 | Clytia hemisphaerica | exon |
| TCONS_00063714-exon-scaffold_399-1510915933:76697..76809 | TCONS_00063714-exon-scaffold_399-1510915933:76697..76809 | Clytia hemisphaerica | exon |
| TCONS_00063714-exon-scaffold_399-1575043694:76697..76809 | TCONS_00063714-exon-scaffold_399-1575043694:76697..76809 | Clytia hemisphaerica | exon |
| TCONS_00063714-exon-scaffold_399-1491911889:78409..78448 | TCONS_00063714-exon-scaffold_399-1491911889:78409..78448 | Clytia hemisphaerica | exon |
| TCONS_00063714-exon-scaffold_399-1510915933:78409..78448 | TCONS_00063714-exon-scaffold_399-1510915933:78409..78448 | Clytia hemisphaerica | exon |
| TCONS_00063714-exon-scaffold_399-1575043694:78409..78448 | TCONS_00063714-exon-scaffold_399-1575043694:78409..78448 | Clytia hemisphaerica | exon |
| TCONS_00063714-exon-scaffold_399-1491911889:78602..78756 | TCONS_00063714-exon-scaffold_399-1491911889:78602..78756 | Clytia hemisphaerica | exon |
| TCONS_00063714-exon-scaffold_399-1510915933:78602..78756 | TCONS_00063714-exon-scaffold_399-1510915933:78602..78756 | Clytia hemisphaerica | exon |
| TCONS_00063714-exon-scaffold_399-1575043694:78602..78756 | TCONS_00063714-exon-scaffold_399-1575043694:78602..78756 | Clytia hemisphaerica | exon |
| TCONS_00063714-exon-scaffold_399-1491911889:78841..79555 | TCONS_00063714-exon-scaffold_399-1491911889:78841..79555 | Clytia hemisphaerica | exon |
| TCONS_00063714-exon-scaffold_399-1510915933:78841..79555 | TCONS_00063714-exon-scaffold_399-1510915933:78841..79555 | Clytia hemisphaerica | exon |
| TCONS_00063714-exon-scaffold_399-1575043694:78841..79555 | TCONS_00063714-exon-scaffold_399-1575043694:78841..79555 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_399 | supercontig | scaffold_399:76697..79555 + |
Blast
The following BLAST results are available for this feature:
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