TCONS_00063716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063716
Unique NameTCONS_00063716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length972

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063716 ID=TCONS_00063716|Name=TCONS_00063716|organism=Clytia hemisphaerica|type=transcript|length=972bp
CAAGGATGCCCAAGTGACGTTGCCAGTCTTCTCGGATTTGGATACGAAGA
AAGCAGGTCAGCAGTATATTATCGGGATGGTGATTGGAAGCATGTTTACT
GACTTCCTTCATGAAATTGAATGCAGCCTCCTCTTGCTCAGTATTTGCCG
AAACCAAATCCAGAATCCGATATTGGATTGGCGCATGACTGGTCAGCGAA
TGGTTGTACTGTCCAAACAGTTTTCTTCGGCTCATGGATTTCTGCTTTTC
GAAAAGCTCAATCATCAAGTCTGCGTGCAAGAATGACACGTTGTGGAAGC
GTAAAATCGACTTGGCTGTACGCTTTTCTTCACCGGAATATGCAATTTCT
TGTAATTCAGCGAGCTGCCTCATGAGTTTGACGTACGCATCAGTCATTTC
TCCATCCAAGTAAATCGTCAGGTCCACCAGGCTTCGCCTGTAGTCTCCAC
CATTTTTTGCCTCTTTGCCATGAAAGGATGCTCGCGCCGAGtccttaaaa
agatttttttcttcgccCTGAAGGTGACGAGGGATCTCTTGGTAAAGATT
GGTCGTCAAACCTTTGAAGGTGTGTAAAGGGTCGCATGCAAGTACTTCGT
ACGATTCCAAACCGACCTTTTCAAGGCTTGTCTTTCCCGATTCGAACAGT
AATGCTGGAAGGTGTTGGACTCCTAAACAAGAAACCGAGAAGATAATTAA
AAGTgctgttttcatgtttttgctTCAACATTTTCGGATTGAAACATCGT
GTATACCTGCGAAAATATCTTCAAGCTGTTTCAAAACCACGTCTTTATTT
TGGTCTTTGTTGACTTGGACGCCacgttttttcaattcttccaCGATCTC
TACCTTTGGAATTCCATCAAGTATCGACATTTTTTGATTATGTACACATT
GTTTTCCATAgctaaaatttttgataaaataaaaagaaagtgttGAACAT
TACTTTGCCACTTCAAACCTCC
Run BLAST on NCBI

transcript from alignment at scaffold_399:78541..80462-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063716 ID=TCONS_00063716|Name=TCONS_00063716|organism=Clytia hemisphaerica|type=transcript|length=1922bp|location=Sequence derived from alignment at scaffold_399:78541..80462- (Clytia hemisphaerica)
CAAGGTGAGATTCTACATTGTAAATTTCAAAAGATATGAAATTAATGTTT
CAAAGGGTTCTTTTGCAAAGGGGGTACTCACAAATTTCTAAAAATCTTTC
TTTGCCTTGAAAAGGTTCGTTCACCCCCATGTATGGAAATTTATGGAACA
GCCCATTTACTTGGAAACTTGGAAAGAAAGGATCGATTTTTGGATTAATA
ATTTAATATAAATTATTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTCATC
TGAATCCTATTATATTGTAAACAAAAGTTTGAGATCAACCCTAGAAGATA
AGGAAGGAATCTAGTAGTAGGTATATACAAGTTACTTAAATGTTGTTCTT
CGAATAAAGTTTACCTCGTCCATATTAAATGGATTTGGGGCTTTAAGTGT
TGATAGGATCTTTTGCTTTCAAGATGTATCTATCTTGACAAAGGCAGGTA
TCTTGTCGTCTGCTATTGAATCCCATATATCGGACAAGTATCTGTAAAAA
GTAAAACAAATGGTAGGAGTGAGGGAAAAAAGTCAAATTGGGATAGGTAG
AAGTCATTATCTGGAAGTCAACTTGAATTAAAATNGAGTAGGAGTGAGGG
AAAAAAGTCAAATTGGGATAGGTAGAAGTCATTATCTAGAAGTCAACTTG
AATTAAAATTTCGTTGTACGAATAAAGTAAAAAATAGTTACTGGCGTTCT
TGTGATATAGTGTAGCTACGAAAATGGTGAGGTGGAGGGTAGTTGATGGT
TTCGTCAAAGTCGTGAAATATTATCCCATTTTGAATCGCCTCCCAAATTT
CATCAATTAATAAATAATCGCATATCCTCTCTAGCTGGCTTTACCATTTT
CGCGGTTTTAGTCGCATCAGTTTGAAGGGAACGAAAGTATTCGATCTCTC
CGATGTCAACAAATCGCCGTGTTTGCTAATAGCATTTCTTGTTTCCTTTT
TCAGGATGCCCAAGTGACGTTGCCAGTCTTCTCGGATTTGGATACGAAGA
AAGCAGGTCAGCAGTATATTATCGGGATGGTGATTGGAAGCATGTTTACT
GACTTCCTTCATGAAATTGAATGCAGCCTCCTCTTGCTCAGTATTTGCCG
AAACCAAATCCAGAATCCGATATTGGATTGGCGCATGACTGGTCAGCGAA
TGGTTGTACTGTCCAAACAGTTTTCTTCGGCTCATGGATTTCTGCTTTTC
GAAAAGCTCAATCATCAAGTCTGCGTGCAAGAATGACACGTTGTGGAAGC
GTAAAATCGACTTGGCTGTACGCTTTTCTTCACCGGAATATGCAATTTCT
TGTAATTCAGCGAGCTGCCTCATGAGTTTGACGTACGCATCAGTCATTTC
TCCATCCAAGTAAATCGTCAGGTCCACCAGGCTTCGCCTGTAGTCTCCAC
CATTTTTTGCCTCTTTGCCATGAAAGGATGCTCGCGCCGAGTCCTTAAAA
AGATTTTTTTCTTCGCCCTGAAGGTGACGAGGGATCTCTTGGTAAAGATT
GGTCGTCAAACCTTTGAAGGTGTGTAAAGGGTCGCATGCAAGTACTTCGT
ACGATTCCAAACCGACCTTTTCAAGGCTTGTCTTTCCCGATTCGAACAGT
AATGCTGGAAGGTGTTGGACTCCTAAACAAGAAACCGAGAAGATAATTAA
AAGTGCTGTTTTCATGTTTTTGCTTCAACATTTTCGGATTGAAACATCGT
GTATACCTGCGAAAATATCTTCAAGCTGTTTCAAAACCACGTCTTTATTT
TGGTCTTTGTTGACTTGGACGCCACGTTTTTTCAATTCTTCCACGATCTC
TACCTTTGGAATTCCATCAAGTATCGACATTTTTTGATTATGTACACATT
GTTTTCCATAGCTAAAATTTTTGATAAAATAAAAAGAAAGTGTTGAACAT
TACTTTGCCACTTCAAACCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039939XLOC_039939Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063716-exon-scaffold_399-1575043694:80459..80462TCONS_00063716-exon-scaffold_399-1575043694:80459..80462Clytia hemisphaericaexon
TCONS_00063716-exon-scaffold_399-1575043694:78541..79508TCONS_00063716-exon-scaffold_399-1575043694:78541..79508Clytia hemisphaericaexon
TCONS_00063716-exon-scaffold_399-1510915933:80459..80462TCONS_00063716-exon-scaffold_399-1510915933:80459..80462Clytia hemisphaericaexon
TCONS_00063716-exon-scaffold_399-1510915933:78541..79508TCONS_00063716-exon-scaffold_399-1510915933:78541..79508Clytia hemisphaericaexon
TCONS_00063716-exon-scaffold_399-1491911889:80459..80462TCONS_00063716-exon-scaffold_399-1491911889:80459..80462Clytia hemisphaericaexon
TCONS_00063716-exon-scaffold_399-1491911889:78541..79508TCONS_00063716-exon-scaffold_399-1491911889:78541..79508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_399supercontigscaffold_399:78541..80462 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.24645	5.79571	7.19007	8.30636	6.06824	7.9463	9.60115	7.71645	13.212	15.5581	0.422447	0.226675	0.209434	0.17893	0	0.0517229	0	0.13157	0.0533133	0.193878	8.27871	13.162	0	0	0	0.105162
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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