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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063729 ID=TCONS_00063729|Name=TCONS_00063729|organism=Clytia hemisphaerica|type=transcript|length=813bp
CTTTTCCTGTAATGCAAGTGTACACCCGACCAAGAGGAGGTCAGAGAGCT
TATAAAGGTCACGTTTTGAATTTGCCTCACAATGTACAAAAAATTGCAGA
TGTTCTGCCAAGAGAGCCTAGTGACATTCCtataatgatttttaaaataa
atgggAAAAATAATACCTCAAAAGAACTTGTCGTTAGACGTGAAAAGGTT
TTCCAGGCATTATTATGGCTGACAGGAAAAAATGAACAAGGTGAACCTAA
TAATTTTCTATATAGTGAAATCAATATAGATATGGAAAGACTACTAAAGC
TGCCTGAAAACGGATTCATTGATTTACCAGACTTGCACGTAAAAATGAAT
GAGAAAAATGATATTGAGTGTGgtgaagaaaatgaaagtgacgaGGAAAA
TGAAGATGTCAGTGAAAGCGAAGAACTACCAGATTTAGGTCCAGTTAATG
ATGATGACGATGAACGTGTTTTTGACAAAAACActgaaatgaaaagtttc
ttACCATCCAAACTAAAGAAAGCAAAGGAAGCTGACTtaacaaaaagtga
aattttgaataCAAAAACTGAAGTTGATATAGGAAGTACTCCACTTAGTG
AATTCAATACTCCCTACTTAGCAAGTCTTGCATTTCCAACATTGTTTCCA
GACACAAAAGGTGACCCAACTAATCCTGCAATCATAAGAGAAATAGCAAA
AAGTGAAACAGAGAGTTatgctgaaaaattgaaacatttaatCAAATTTG
CCGAAATTGATGACAAAGGAAAATGGTTTTATAGATTTGCATCTCATCCA
AGATTTTCCTTTT Run BLAST on NCBI protein sequence of TCONS_00063729-protein >TCONS_00063729-protein ID=TCONS_00063729-protein|Name=TCONS_00063729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
FPVMQVYTRPRGGQRAYKGHVLNLPHNVQKIADVLPREPSDIPIMIFKIN
GKNNTSKELVVRREKVFQALLWLTGKNEQGEPNNFLYSEINIDMERLLKL
PENGFIDLPDLHVKMNEKNDIECGEENESDEENEDVSESEELPDLGPVND
DDDERVFDKNTEMKSFLPSKLKKAKEADLTKSEILNTKTEVDIGSTPLSE
FNTPYLASLAFPTLFPDTKGDPTNPAIIREIAKSETESYAEKLKHLIKFA
EIDDKGKWFYRFASHPRFSF Run BLAST on NCBI transcript from alignment at scaffold_399:125624..126436 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063729 ID=TCONS_00063729|Name=TCONS_00063729|organism=Clytia hemisphaerica|type=transcript|length=813bp|location=Sequence derived from alignment at scaffold_399:125624..126436 (Clytia hemisphaerica)
AAAAGGAAAATCTTGGATGAGATGCAAATCTATAAAACCATTTTCCTTTG
TCATCAATTTCGGCAAATTTGattaaatgtttcaatttttcagcatAACT
CTCTGTTTCACTTTTTGCTATTTCTCTTATGATTGCAGGATTAGTTGGGT
CACCTTTTGTGTCTGGAAACAATGTTGGAAATGCAAGACTTGCTAAGTAG
GGAGTATTGAATTCACTAAGTGGAGTACTTCCTATATCAACTTCAGTTTT
TGtattcaaaatttcactttttgttaAGTCAGCTTCCTTTGCTTTCTTTA
GTTTGGATGGTaagaaacttttcatttcagTGTTTTTGTCAAAAACACGT
TCATCGTCATCATCATTAACTGGACCTAAATCTGGTAGTTCTTCGCTTTC
ACTGACATCTTCATTTTCCtcgtcactttcattttcttcacCACACTCAA
TATCATTTTTCTCATTCATTTTTACGTGCAAGTCTGGTAAATCAATGAAT
CCGTTTTCAGGCAGCTTTAGTAGTCTTTCCATATCTATATTGATTTCACT
ATATAGAAAATTATTAGGTTCACCTTGTTCATTTTTTCCTGTCAGCCATA
ATAATGCCTGGAAAACCTTTTCACGTCTAACGACAAGTTCTTTTGAGGTA
TTATTTTTcccatttattttaaaaatcattataGGAATGTCACTAGGCTC
TCTTGGCAGAACATCTGCAATTTTTTGTACATTGTGAGGCAAATTCAAAA
CGTGACCTTTATAAGCTCTCTGACCTCCTCTTGGTCGGGTGTACACTTGC
ATTACAGGAAAAG Coding sequence (CDS) from alignment at scaffold_399:125624..126436 >TCONS_00063729 ID=TCONS_00063729|Name=TCONS_00063729|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_399:125624..126436 (Clytia hemisphaerica)
AAAGGAAAATCTTGGATGAGATGCAAATCTATAAAACCATTTTCCTTTGT
CATCAATTTCGGCAAATTTGattaaatgtttcaatttttcagcatAACTC
TCTGTTTCACTTTTTGCTATTTCTCTTATGATTGCAGGATTAGTTGGGTC
ACCTTTTGTGTCTGGAAACAATGTTGGAAATGCAAGACTTGCTAAGTAGG
GAGTATTGAATTCACTAAGTGGAGTACTTCCTATATCAACTTCAGTTTTT
GtattcaaaatttcactttttgttaAGTCAGCTTCCTTTGCTTTCTTTAG
TTTGGATGGTaagaaacttttcatttcagTGTTTTTGTCAAAAACACGTT
CATCGTCATCATCATTAACTGGACCTAAATCTGGTAGTTCTTCGCTTTCA
CTGACATCTTCATTTTCCtcgtcactttcattttcttcacCACACTCAAT
ATCATTTTTCTCATTCATTTTTACGTGCAAGTCTGGTAAATCAATGAATC
CGTTTTCAGGCAGCTTTAGTAGTCTTTCCATATCTATATTGATTTCACTA
TATAGAAAATTATTAGGTTCACCTTGTTCATTTTTTCCTGTCAGCCATAA
TAATGCCTGGAAAACCTTTTCACGTCTAACGACAAGTTCTTTTGAGGTAT
TATTTTTcccatttattttaaaaatcattataGGAATGTCACTAGGCTCT
CTTGGCAGAACATCTGCAATTTTTTGTACATTGTGAGGCAAATTCAAAAC
GTGACCTTTATAAGCTCTCTGACCTCCTCTTGGTCGGGTGTACACTTGCA
TTACAGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063729-exon-scaffold_399-1491911889:125624..126436 | TCONS_00063729-exon-scaffold_399-1491911889:125624..126436 | Clytia hemisphaerica | exon |
| TCONS_00063729-exon-scaffold_399-1510915933:125624..126436 | TCONS_00063729-exon-scaffold_399-1510915933:125624..126436 | Clytia hemisphaerica | exon |
| TCONS_00063729-exon-scaffold_399-1575043694:125624..126436 | TCONS_00063729-exon-scaffold_399-1575043694:125624..126436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_399 | supercontig | scaffold_399:125624..126436 . |
Blast
The following BLAST results are available for this feature:
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