|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063737 ID=TCONS_00063737|Name=TCONS_00063737|organism=Clytia hemisphaerica|type=transcript|length=1281bp
cccagatattcacccaagaaacaagtgtgctaaattttagccaaatgcga
ccatttttgaagtttccatCAACCCTTAAACCATTACCTACaaagaaata
tctttaaagATTTACTCAAGAAAACAAAGCTAAAATTACCTATGCGTGCC
TTCCGTCTTTCCAAATATGTCTTCTACGATCGTTGATTTGCAGCTTGATA
AGCCAAAGTCAGTAAGTTTTTGTTCAACATTCTTTCTCGAGTGAATGAAG
CACCTCAATTGGTCAGAAAGGGGAAAAGTTTTGGCGAAAGCATCGGATAA
GGCAGTTTCTCCATCCGTGCCAAAGCATTTTAACTCTGACATCTCTTGGT
TGATGCTGACCAAGCTGGACGCAAAATAATGATAAGTCGAAAATACTTTT
CGATAGTGAATGAGGGCAGGTCCCATATCAATTTTTGGTTGATTTGTGTC
AGCCCGTAACACGGCCATATTCTTATAGGTTGTCGGGGTGAAGAAAAAAC
CTCCAAAATTAAAGGTTGGATCTATAGTCAAAACTGAATTGAGCCCATAT
GGCATCTTTACGCAAAATCTCTCAATATCCTTAAAGGCCGCCTCAGTTCC
GATAAGGCAAATTGGCTCTGGGGCTCCTTCAACACGCCTGATAAATATCT
CATCGTCAGTATTCATTGTTCTTTTGCATTCCTTCATCAAATCAGCAAGA
AAATCTTTATCAGATTTGCTAGTAGTAGAAGAGACATCTCTCCGAAAGTT
CTTAACCTGCATTATATTCCGGGGATTTTGAGATGACGAATCAATATTCA
ACGTTCCTCCAGTGTTTTTTCTGATCTGCCTTATAGATTCTGAGGGTTTA
TTGACTTTCGCCGTTGTTTTTATAACTTCTCTCATACTGGTGGTAGTTTG
TTTAAATGACGCAACCCTGTTTTTGGAATGTCCATGGGCTTTCACAGTGA
ATTGCTTCTCATTCCCGTCAAAATTGTACTTGACTAAGCAATATTGGAAA
TAAGTTGCCTGATTAGGAATTTTCAATCGAATGATCTTTCTGTGAAAATC
AGGACATGCTTTGTTGGTGCCATTGTATTTCGTTAAGATGAATCTATCTC
CTTCGTCTCCCTCTTCATCAATGATGACTTTGTTTTCAGTGATAATAGTA
TGGATATTAATATCTCTACCAAAACCGTTGATGTAGGCACCATTATCGTC
GGCAGTTATGTCTTTTGGATTGTTGAGTGCATTCAGGTTAACAATGAAGG
TCATATTTTTCTGACATCTGATAGGCACCTT Run BLAST on NCBI transcript from alignment at scaffold_4:114425..116453+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063737 ID=TCONS_00063737|Name=TCONS_00063737|organism=Clytia hemisphaerica|type=transcript|length=2029bp|location=Sequence derived from alignment at scaffold_4:114425..116453+ (Clytia hemisphaerica)
cccagatattcacccaagaaacaagtgtgctaaattttagccaaatgcga
ccatttttgaagtttccatCAACCCTTAAACCATTACCTACaaagaaata
tctttaaagATTTACTCAAGAAAACAAAGCTAAAATTACCTATGCGTGCC
TTCCGTCTTTCCAAATATGTgaccccccaagcgatttggagtacattaaa
aatgagaccggtcttggtgcggaCAGATCGATAATATGGGCGGTAAAAAA
GCGGCGAAATGATTTACCGTGCGGTAAAATTATACCTTTGTATCGGCcag
aaatcatccaaaaatcttttctaaaaaTCCATTCAAACGCACTCGATCGG
TCACTAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGCGTTTTGTACGCACG
GACCATACGGTACTGTGCGGTCTTCTGGccgcttttttcaacttttactc
GCACAATTAACCAGTCGGAAAGCGGCACGAGCACGACCAAATCGTTTGGA
GGGTCACATATGTCTTCTACGATCGTTGATTTGCAGCTTGATAAGCCAAA
GTCAGTAAGTTTTTGTTCAACATTCTTTCTCGAGTGAATGAAGCACCTCA
ATTGGTCAGAAAGGGGAAAAGTTTTGGCGAAAGCATCGGATAAGGCAGTT
TCTCCATCCGTGCCAAAGCATTTTAACTCTGACATCTCTTGGTTGATGCT
GACCAAGCTGGACGCAAAATAATGATAAGTCGAAAATACTTTTCGATAGT
GAATGAGGGCAGGTCCCATATCAATTTTTGGTTGATTTGTGTCAGCCCGT
AACACGGCCATATTCTTATAGGTTGTCGGGGTGAAGAAAAAACCTCCAAA
ATTAAAGGTTGGATCTATAGTCAAAACTGAATTGNGTGAAGAAAAAACCG
CCAAAATTAAAGGTTGGATCTATAGTCAAAACTGAATTGAGCCCATATGG
CATCTTTACGCAAAATCTCTCAATATCCTTAAAGGCCGCCTCAGTTCCGA
TAAGGCAAATTGGCTCTGGGGCTCCTTCAACACGCCTGATAAATATCTCA
TCGTCAGTATTCATTGTTCTTTTGCATTCCTTCATCAAATCAGCAAGAAA
ATCTTTATCAGATTTGCTAGTAGTAGAAGAGACATCTCTCCGAAAGTTCT
TAACCTGCATTATATTCCGGGGATTTTGAGATGACGAATCAATATTCAAC
GTTCCTCCAGTGTTTTTTCTGATCTGCCTTATAGATTCTGAGGGTTTATT
GACTTTCGCCGTTGTTTTTATAACTTCTCTCATACTGGTGGTAGTTTGTT
TAAATGACGCAACCCTGTTTTTGGAATGTCCATGGGCTTTCACAGTGAAT
TGCTTCTCATTCCCGTCAAAATTGTACTTGACTAAGCAATATTGGAAATA
AGTTGCCTGATTAGGAATTTTCAATCGAATGATCTTTCTGTGAAAATCAG
GACATGCTTTGTTGGTGCCATTGTATTTCGTTAAGATGAATCTATCTCCT
TCGTCTCCCTCTTCATCAATGATGACTTTGTTTTCAGTGATAATAGTATG
GATATTAATATCTCTACCAAAACCGTTGATGTAGGCACCATTATCGTCGG
CAGTTATGTCTTTTGGATTGTTGAGTGCATTCAGGTTAACAATGAAGGTC
ATATTTTTCTGACATCTGATAGGCACCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063737-exon-scaffold_4-1491911889:114425..114588 | TCONS_00063737-exon-scaffold_4-1491911889:114425..114588 | Clytia hemisphaerica | exon |
| TCONS_00063737-exon-scaffold_4-1510915933:114425..114588 | TCONS_00063737-exon-scaffold_4-1510915933:114425..114588 | Clytia hemisphaerica | exon |
| TCONS_00063737-exon-scaffold_4-1575043694:114425..114588 | TCONS_00063737-exon-scaffold_4-1575043694:114425..114588 | Clytia hemisphaerica | exon |
| TCONS_00063737-exon-scaffold_4-1491911889:115282..115631 | TCONS_00063737-exon-scaffold_4-1491911889:115282..115631 | Clytia hemisphaerica | exon |
| TCONS_00063737-exon-scaffold_4-1510915933:115282..115631 | TCONS_00063737-exon-scaffold_4-1510915933:115282..115631 | Clytia hemisphaerica | exon |
| TCONS_00063737-exon-scaffold_4-1575043694:115282..115631 | TCONS_00063737-exon-scaffold_4-1575043694:115282..115631 | Clytia hemisphaerica | exon |
| TCONS_00063737-exon-scaffold_4-1491911889:115687..116453 | TCONS_00063737-exon-scaffold_4-1491911889:115687..116453 | Clytia hemisphaerica | exon |
| TCONS_00063737-exon-scaffold_4-1510915933:115687..116453 | TCONS_00063737-exon-scaffold_4-1510915933:115687..116453 | Clytia hemisphaerica | exon |
| TCONS_00063737-exon-scaffold_4-1575043694:115687..116453 | TCONS_00063737-exon-scaffold_4-1575043694:115687..116453 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:114425..116453 + |
Blast
The following BLAST results are available for this feature:
|
