TCONS_00063742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063742
Unique NameTCONS_00063742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063742 ID=TCONS_00063742|Name=TCONS_00063742|organism=Clytia hemisphaerica|type=transcript|length=458bp
CTCGAAAAAGTAAAATCGAATTACATGAAAAAACTTTAAGCTTAACCAAC
TTAAATTTTAGATCAGCTAAAGGCGCATTTTTTCAACGTTCTACGGTGAA
AATTTCATTGCGAAAAAAGTCTTTGTTTTAGAAATATGAAGTTTCAAGCA
CGCCAAGCCCCCAAGTTGGAGATTAAAAAAAGTcgagattgaaaattttc
aaagcaaaaaagcTAATTGACTTTTGATTGACAGCTCTCTTTTTatgtca
ttttgataaaattttccattttcatgGTCAAACCTGTGCACCTTCCAAAT
CGAATTTCTCGTTAATGAAAAGCTGGCTGAAGATAAATCTTTCAGCAATG
GAAAGAAGAGGAACTTTTCTTTCTGCTGCATATAAAATTAACTTTCTTGG
ACATTTCTACCTTTTGCAAATTAACGTTAGTTATGAGTTGAAATAACTAA
CTTCATCT
Run BLAST on NCBI

transcript from alignment at scaffold_4:20442..20899

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063742 ID=TCONS_00063742|Name=TCONS_00063742|organism=Clytia hemisphaerica|type=transcript|length=458bp|location=Sequence derived from alignment at scaffold_4:20442..20899 (Clytia hemisphaerica)
AGATGAAGTTAGTTATTTCAACTCATAACTAACGTTAATTTGCAAAAGGT
AGAAATGTCCAAGAAAGTTAATTTTATATGCAGCAGAAAGAAAAGTTCCT
CTTCTTTCCATTGCTGAAAGATTTATCTTCAGCCAGCTTTTCATTAACGA
GAAATTCGATTTGGAAGGTGCACAGGTTTGACcatgaaaatggaaaattt
tatcaaaatgacatAAAAAGAGAGCTGTCAATCAAAAGTCAATTAgcttt
tttgctttgaaaattttcaatctcgACTTTTTTTAATCTCCAACTTGGGG
GCTTGGCGTGCTTGAAACTTCATATTTCTAAAACAAAGACTTTTTTCGCA
ATGAAATTTTCACCGTAGAACGTTGAAAAAATGCGCCTTTAGCTGATCTA
AAATTTAAGTTGGTTAAGCTTAAAGTTTTTTCATGTAATTCGATTTTACT
TTTTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039964XLOC_039964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063742-exon-scaffold_4-1491911889:20442..20899TCONS_00063742-exon-scaffold_4-1491911889:20442..20899Clytia hemisphaericaexon
TCONS_00063742-exon-scaffold_4-1510915933:20442..20899TCONS_00063742-exon-scaffold_4-1510915933:20442..20899Clytia hemisphaericaexon
TCONS_00063742-exon-scaffold_4-1575043694:20442..20899TCONS_00063742-exon-scaffold_4-1575043694:20442..20899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:20442..20899 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.142481	0.138941	0.161324	0.157831	3.65073	2.12568	6.045	6.51671	6.52884	7.7511	4.20608	4.8667	0.663317	0.196817	0.242716	0.607767	0.10696	0.328891	1.5146	0.316985	0.551034	0.403163	0.173678	0.297046	0	0.682635	1.17222	0.417007	0.474428	0.161122
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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