TCONS_00063762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063762
Unique NameTCONS_00063762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2155

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063762 ID=TCONS_00063762|Name=TCONS_00063762|organism=Clytia hemisphaerica|type=transcript|length=2155bp
attttataaaagcaagAAGGGCAAGTAAAAGGGTCAGTGTCCAGGTCTTT
AATAACTTAAACACAATTTCCCTACTAAAAACGTTGTTAATGATAATGTA
CAGTATGTAAGTTttctcaaaacatattttttaatttttgacaacattaa
agtttgaaaagagcaattttatttttattttttttccatcctccggtCCA
AAAGTTCATCTCcaaatgtccgtaaaccagaaaataaaaaagtaattgcc
ttaggattaaataaacattttaaactcagggaaCTTTTATTAGAATGCAA
TATTATATAGCTATTTacaagaacaaaggaaatttttggtttttgctcaa
ttttgcatgatgagtgacgtcatcaaaaatttttttgtcaaaatttagcT
GTTACCTTACATGACaaagatcttgtgtgccaaatttcaaccaaaaagac
caactagatcaaaagttaaggggttaTACAGGAAGCActccccctagttc
tgaactgcccctaaaagcctatagtttgaatagggttaaacttAATCAAA
AGAGTAATGAATGCAGAGCTTTTGGTATTGAAATTAGCTATTATAATCTT
TTAAAACATTTGATTCATAGAAAAAGCATTCCAGAGTGAAAATCCTCGAT
TCAGATGAAGAAGAAGAGCCGGAAGATGCGCATGATCAAATTGCTCAAGA
TATCTTTGCTGATGAAGATGATGACGACGATGTCCGTTCAACACGGTCTG
CGCGGCCTGCTTCACGACAATCAGAAAAATACACAGCTATCACAGATATT
GGTGATGAATCCGAAGAGGAAGAAGAAGGCGTTGATGATTTTATTGTTGA
TGATTTTATCGTGGATGATCATAACCAACccatcaaaacaaagaagccAA
GGAAAAGGAGTCAGTATACTGACAGTGCTTTGCAAGAAGCTCAAGATATC
TTTGGTCTTGAGTTTGATTTGAGTGAATTCGATGCAGATGGTGGTTTTGA
TGACATGACAGAGGAGGATGATGAGGATCTCACTCCTGAAGAAATCGCTG
CAAAGAAAGCAAAACAAGCCAAGAAGAAAGGCTCAAGGAAGTCAATTTAT
CAGgTTTATGAACCATCTGAATTAGAAAAGGGTCATTTGACTATGGAAGA
TAGTAAGATCCGTATGGCAGATGTCCCTGAAAGATTCCAACTTCGACCTG
TTCCAGTCAAGCCAGCCGTTGATTCTGAACTCGATGAAGAGGCAGAATGG
ATTTACAAACAGGCTTTCATGATACCGCCAATCTCTCAACAAAATTTCCA
GGATCCAGTCGACACCAATAAAGTTCATAATGGTTTTGAAGCTAAACAAG
TGACAGCTATTCCGAGGATTCGCGCTGCACTCAGTTTCATGAAGAAAGAT
ATGTTTGAGGTTCCATTCATTGCGACATACCGTAAAGAATACATCGAACC
CGAATTGAAACGAGATGATTTGTGGAAAGTATATGAATGGGATGAAAAAT
ACACGCAATTTACGATGCGTCGTGAGAACATGCGTAAGATGTTTCAAGAG
ATGCAGAAATACCAATTCGAACTGGCCCGAAACGACGNGTTTTGAAGCTA
AACAAGTGACAGCTATTCCGAGGATTCGCGCTGCACTCAGTTTCATGAAG
AAAGATATGTTTGAGGTTCCATTCATTGCGACATACCGTAAAGAATACAT
CGAACCCGAATTGAAACGAGATGATTTGTGGAAAGTTTATGAATGGGATG
AAAAATACACGCAATTTACGATGCGTCGTGAGAACATGCGTAAGATGTTT
CAAGAGATGCAGAAATACCAATTCGAACTGGCCCGAAACGACGAAGAAGC
TGCTTCAAAACCTGGCTTCAAAGTCATCGAGCAAGAAGACCTTGACAGAC
TTGACACAGCCGCCAACCTACAAGAATTGATGGACATTTACGTTCATTTC
CAAGTGTACCATGGCAATGAAATGGTAGACATGAAAGAATGGAAAGCCAA
AAATAAACCGGCACCcgagaagaagatgaaaaagaagactATCCGTATCA
AGAAACCGAAAACGAAGAAAGCCAAGGAACTGGAAATCGATCCGGAAACG
GGCGAACCGGTCGAAAAAGAGGAAGGAGAAGAACCGGAACAAGAAGATGA
TGATG
Run BLAST on NCBI

protein sequence of TCONS_00063762-protein

>TCONS_00063762-protein ID=TCONS_00063762-protein|Name=TCONS_00063762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MICGKYMNGMKNTRNLRCVVRTCVRCFKRCRNTNSNWPETTXFEAKQVTA
IPRIRAALSFMKKDMFEVPFIATYRKEYIEPELKRDDLWKVYEWDEKYTQ
FTMRRENMRKMFQEMQKYQFELARNDEEAASKPGFKVIEQEDLDRLDTAA
NLQELMDIYVHFQVYHGNEMVDMKEWKAKNKPAPEKKMKKKTIRIKKPKT
KKAKELEIDPETGEPVEKEEGEEPEQEDDD
Run BLAST on NCBI

transcript from alignment at scaffold_40:53967..60630-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063762 ID=TCONS_00063762|Name=TCONS_00063762|organism=Clytia hemisphaerica|type=transcript|length=6664bp|location=Sequence derived from alignment at scaffold_40:53967..60630- (Clytia hemisphaerica)
ATTTTATAAAAGCAAGAAGGGCAAGTAAAAGGGTCAGTGTCCAGGTCTTT
AATAACTTAAACACAATTTCCCTACTAAAAACGTTGTTAATGATAATGTA
CAGTATGTAAGTTTTCTCAAAACATATTTTTTAATTTTTGACAACATTAA
AGTTTGAAAAGAGCAATTTTATTTTTATTTTTTTTCCATCCTCCGGTCCA
AAAGTTCATCTCCAAATGTCCGTAAACCAGAAAATAAAAAAGTAATTGCC
TTAGGATTAAATAAACATTTTAAACTCAGGGAACTTTTATTAGAATGCAA
TATTATATAGCTATTTACAAGAACAAAGGAAATTTTTGGTTTTTGCTCAA
TTTTGCATGATGAGTGACGTCATCAAAAATTTTTTTGTCAAAATTTAGCT
GTTACCTTACATGACAAAGATCTTGTGTGCCAAATTTCAACCAAAAAGAC
CAACTAGATCAAAAGTTAAGGGGTTATACAGGAAGCACTCCCCCTAGTTC
TGAACTGCCCCTAAAAGCCTATAGTTTGAATAGGGTTAAACTTAATCAAA
AGAGTAATGAATGCAGAGCTTTTGGTATTGAAATTAGCTATTATAATCTT
TTAAAACATTTGATTCATAGAAAAAGCATTCCAGAGTGAAAATCCTCGAT
TCAGATGAAGAAGAAGAGCCGGAAGATGCGCATGATCAAATTGCTCAAGA
TATCTTTGCTGATGAAGATGATGACGACGATGTCCGTTCAACACGGTCTG
CGCGGCCTGCTTCACGACAATCAGAAAAATACACAGCTATCACAGATATT
GGTGATGAATCCGAAGAGGAAGAAGAAGGCGTTGATGATTTTATTGTTGA
TGATTTTATCGTGGATGATCATAACCAACCCATCAAAACAAAGAAGCCAA
GGAAAAGGAGTCAGTATACTGACAGGTAAGTTTAAAGGCTTTAGATTCTC
TCATTCATTTGATCAGCATAAGAAAATGGTCTTCTTTGTCCTTTCATGAA
AAATGTCACATAATATAAAATTAATATGAATACAACCATTATGTGCTTCC
CTTGAGGGTGCTTGTTCGGGAAAAATCATAATCTTTTTTCTGTTCCCCTA
AGGGCTGGCTTTTTAAAAATTAGGGACACGAGTCTGTTAATAAACGTCCG
GAAATTCCCAATTTTCTAGCTCTTGTTGTAATGGCAGATTTCTGTAAAAC
CTGAATGGCTAGATGTTGTGCTTTAGCTGAAAAGTGTGCTGATTCTCAGT
GGGAATTGTCCTACCTAGGTTGCGTGACATTACAATAGAAATTCAAGGCT
TAACCAATCAGAAGCTTTGGGATTTTCAAAAACAATAGTAACTATATTTC
TTGCGCTATTCAATTATTTTTTGCTTGGAAAAGCTTAAAGCCCAACATCT
AGCCCTTTGAGCTTTATTAATCAGTGGTTGTAATTATGTAATTAGTGTAA
TTATGTACTTTAAACACTAATAAATGATATGTTACTTTTACTGGTACCCA
TATTGTTTATTTCTTTTAGTGCTTTGCAAGAAGCTCAAGATATCTTTGGT
CTTGAGTTTGATTTGAGTGAATTCGATGCAGATGGTGGTTTTGATGACAT
GACAGAGGAGGATGATGAGGATCTCACTCCTGAAGAAATCGCTGCAAAGA
AAGCAAAACAAGCCAAGAAGAAAGGCTCAAGGAAGTCAATTTATCAGGTA
GGAAGGTTTACTGACGTTACTTTTTCGTTGGAATCACAAAGAATTGTAGT
AAATTGCAATAACAAGTCACTTAAGAATATCAGTCATTAGTAGAAAAAGT
AATTTTTAACAAAATTAACACTGTGTTCAAAGTTCCACCGTCTCGGTGTG
TAAAGATACTCTTCTGCCTCAAAACACAGTAAAATTCTGCAAAATTTTGA
AAAACCGGCTAATTTGTTGTGTAAATTTCAAGTTCCCTTTGACACAAAAA
AATTTGACCACTGTTAATAGAATTACGGAAAAATCTGTTGCATTCATTTT
TTCAAAAAAAATATGCGGCTGTCATAACTGCAGTGCAAGCATTTAACATG
ACATGTTCACTTCACACATTGTTTTTTTTATAGGTTTATAAATGTGATGT
TGGTATTGCAGGGTATTGAGGCGTTACTCTTTTTTTAGAGAGTCTTTGCC
AATTGTGGATTCATTTTGATATTTTTTTTATAGGTTTATGAACCATCTGA
ATTAGAAAAGGGTCATTTGACTATGGAAGATAGTAAGATCCGTATGGCAG
ATGTCCCTGAAAGATTCCAACTTCGACCTGTTCCAGTCAAGCCAGCCGTT
GATTCTGAACTCGATGAAGAGGCAGAATGGATTTACAAACAGGCTTTCAT
GATACCGCCAATCTCTCAACAAAATTTCCAGGTATTTTTCATATGTGAAA
ATGCATTTTTTGGTCACCCCATCTAACCCTGGCATATTTAAATTTCCTCT
GTCAAGTTAAAATTATTACATGTCTTTATAAAAGGAAAAATATCTTTTTG
AATAATGATAATTTCAAAAATATGGCTCATTATAGGCATAAAAAATGCTA
AATTATGTTTTCTTGCCCAGTTAACCCTTTATTTCTGATTAAGAACCAAT
TATTTCTACTGGTTGTTTTTTCTTTAGGATCCAGTCGACACCAATAAAGT
TCATAATGGTTTTGAAGCTAAACAAGTGACAGCTATTCCGAGGATTCGCG
CTGCACTCAGTTTCATGAAGAAAGATATGTTTGAGGTTTGTAAGGGTTCC
ATTGTAAAATTTTTCTTGTACTTTATAGTTTGCTTAATATGTAATCGGGG
GATACAAGCGGGCACTTTGGAAGGGGTTTAGCTTGCCATGATAAATTTCC
GAGCAGATCCTAATAGACGATATCGCGTTTAGATAAATGCAATGCATTCT
GGTTTCTCGGGGACCCTCAAGGGAATTATAATCTATTCCAGATCATTATA
TAATCGACATTATAATTCCTTTGAGAGTCCCCGAGAAACCAGAATGCATT
GCATTTATCTAAACGCGATATCGTCTATTACGGTACGTACTTACTCTCGG
CTGAGGTGAAACAATCCCACCAAAAAATAATTCAAAAATCGATCATAAAC
ATAAACATAAACTTTGGAAACCAGTTGCGGACTTCAATATTTTGGCTGAT
GAACATTTTCAGATCTTCATATTCCAAGCATGTCTTTAGAGCAGAGCACA
CTCCACACAGACAGACATGATCTCAATGAAATTCGGCCATTATTAACGAC
TTATTTCAAATTTTAATGATAGCTTTGAAGAATGTTTTTTTTGAAAGTTT
CTTTACTTTAAGTTAGGTCCCCCCCCCCCAATTAAATTGGTTTAAAAATT
TCAAGAGTTTGTAATGACAAAGACATCATTTGTATCGTGGTAAAGAGGTT
TGGCCATAGTATGAATGTTTTTAGACTAATAAGAATCTCTTACTCAATTC
TAGGTTCCATTCATTGCGACATACCGTAAAGAATACATCGAACCCGAATT
GAAACGAGATGATTTGTGGAAAGTATATGAATGGGATGAAAAAGTAACTT
TTATACTTACTTACATCACAATCGTGAAAGCCATTNATATGAATGGGACG
AAAAAGTAACTTTTATACTTACTTACATCACAATCGTGAAAGCCATTGGA
AAGCTTCAGTTTGTAACATAGAAAACATTTACGTTCTTTAAAGACTGATA
GCACAATATTTGTGTTAATAATCACGGATTTTGAGGGGAAGAATATGGGA
TATTTTCATCGGCTCAATGAAACTTTTATGGAGTGGGATAGGTAAAGAAA
TCGGGGTATATTCAGTCAGCACGTTGCTCTATAGTCTTAAGTTATTCCGT
CTCAACGAAGTATATAACCCTATGGGCACACAACGTCTTATGGACATTCA
ATGGACGGCTTTAAGACCTTTGGACGTCCTAGAAACGTACATTAGACGTC
CAAAAGACGCTAGTGCCCATTGGGAAAGAGGCTTTTCCGTCTCAAAATAA
TGCATAATTCACCAAAAGTTTTTAGAATACGTTCATATATGAAAATTTGC
TGTGAAATGACAATTTTCCGTCTAAAACTTAAAAACCTTGCCCTGACCAC
TATTTCATTCCAGTACACGCAATTTACGATGCGTCGTGAGAACATGCGTA
AGATGTTTCAAGAGATGCAGAAATACCAATTCGAACTGGCCCGAAACGAC
GNGTTTTGAAGCTAAACAAGTGACAGCTATTCCGAGGATTCGCGCTGCAC
TCAGTTTCATGAAGAAAGATATGTTTGAGGTTTGTAAGGGTTCTCATTGT
AAAATTTTTCTTGTACTTTATAGTTTGCTTAATATGTAATTGGGGGATAC
AAGCGGGCACTTTGGAAGGGGCTTAGTTCGCCATGATAAATTTACGAGCA
GATCCTAATTACGGTACGTACTTACTCTCGGCTGAGGTGAAACAATCTCA
CCAAAAAATAATTCAAAATCGATCATAAACATAAACATAAACTTTGGAAA
CAAGTTGCGGACTTCAATATTTTGGCGGATGAACATTTTCAGATCTTCAT
ATTCCAAGCATGTCTTTAGAGCAGAGCACACTCCGCACTGACAGACATGA
TCTTAATGAAATTCGGCCATTATTAACGACTTATTTCAAATTTTAATGAT
AGCTTTGAAGAATGTTTTTAGTTGAAAGTTTCTTTACTTTAAGTTAGNAT
TTCAAATTTTAATGATAGCTTTGAAGAATGTTTTTAGTTGAAAGTTTCTT
TACTTTAAGTTAGCCCCCCCCCAATTAAATTGGTTTAAAAATTTCAAGAG
TTTGTAATGACAAAGACATCATTTGTATCGTGGTAAAGAGGTTTGGCCAT
AGTATGAATGTTTTTAGACTAATAAGAATCTCTTACTCAATTCTAGGTTC
CATTCATTGCGACATACCGTAAAGAATACATCGAACCCGAATTGAAACGA
GATGATTTGTGGAAAGTTTATGAATGGGATGAAAAAGTAACTTTTATACT
TACTTACATCACAATCGTGAAAACCATTGGAAAGCCTCAGTTTTTAACAT
AGAAAAACATTTACGTTCTTTAAAGACTGATAGCACAATATTTGTGTTAA
TAATCACGGTTTTTGAGGGGAAGAATATGGGATATTTTCATCGGCTCAAT
GAAACTTTTATGGAGTGGGATAGGTAAAGAAATCGGGGTATATTCAGTCA
GCACGTTGTTCTATGGTCTTAAGTTATTCCGTCTCAACGAAGTATATAAC
CCTATGGGCACACAACTNAAATTCGCTTAAATAGAGCTTTTTAAGCGTTT
TCCCTATGGGCACACAACGTCTTATGGACATTCAATGGACGGCTTTAAGA
CCTTTGGACGTCCTAGAAACGTACATTAGACGTCCAAAAGACGCTAGTGC
CCATTGGGAAAGAGGCTTTTCCGTTTCAAAATAATGCATAATTCACAAAA
GTTTTTAGAATACGTTCATATATGAAAATTTGCTGTGAAATGACAATTTT
CCGTCTAAAACTTAAAAACCTTGCTCTGACCACTATTTTATCACTACAGT
ACACGCAATTTACGATGCGTCGTGAGAACATGCGTAAGATGTTTCAAGAG
ATGCAGAAATACCAATTCGAACTGGCCCGAAACGACGAAGAAGCTGCTTC
AAAACCTGGCTTCAAAGTCATCGAGCAAGAAGACCTTGACAGGTATAATA
TAATAGCAAGCATTGAAAAAAATTATCGGTCTATCATATAACACCCATAT
TACACGGACTATAAACTCTGGCTACATTGCAACCCATTTTCTAAGCTACT
GCACAGGAGCAAAGCATCCAGATCTATTCCATACTACACATGTGATTTTT
TAACTTACTTTTATTTCTTATACGGTCTTTATACGTTTGCAAGATGATAA
GACAACAAGATTTTCAGATTTTGCTTCAATACCATATGAATATGAATATC
ATTTATCATAGGCGCTGTGGTATAGTGGTCATTGACCTGGGTTGCTGCAC
AGGCGACTAAGGTTCGATTCCCACTCGCAGCGGTTCACTTGGCAAGTGAA
TGAACCTTCGCCCGGGTCAATCCATGTCATGTGCAAGGTGCTGACGGGGC
GCTCATTGGAAGCGTTTATAGTTGCGAAAATAGGCCTCAAAGCCTCCTGT
AAAAATACAAATACACAAATCATGGTTTATTTCATTTGATGGATTTCCTT
CTCTTGGAAGTCAACGAATACTATTCACATCAATTCCCTAATTCATTCGA
AAACTATGATACACGGGTTCTTTCAAAAAGTCAACAAAGCTTCGAGAACT
CTTTTGATCAAACTGAGATCAGAATTAATAATTTACTCGAAGTTTAACAA
TGCAAAGAAACCGGTTATTTTTCTACATTATCAATCTATTTTTTATGATT
TTTACAGACTTGACACAGCCGCCAACCTACAAGAATTGATGGACATTTAC
GTTCATTTCCAAGTGTACCATGGCAATGAAATGGTAGACATGAAAGAATG
GAAAGCCAAAAATAAACCGGCACCCGAGAAGAAGATGAAAAAGAAGACTA
TCCGTATCAAGAAACCGAAAACGAAGAAAGCCAAGGAACTGGAAATCGAT
CCGGAAACGGGCGAACCGGTCGAAAAAGAGGAAGGAGAAGAACCGGAACA
AGAAGATGATGATG

Coding sequence (CDS) from alignment at scaffold_40:53967..60630-

>TCONS_00063762 ID=TCONS_00063762|Name=TCONS_00063762|organism=Clytia hemisphaerica|type=CDS|length=3450bp|location=Sequence derived from alignment at scaffold_40:53967..60630- (Clytia hemisphaerica)
ACTTGACACAGCCGCCAACCTACAAGAATTGATGGACATTTACGTTCATT
TCCAAGTGTACCATGGCAATGAAATGGTAGACATGAAAGAATGGAAAGCC
AAAAATAAACCGGCACCCGAGAAGAAGATGAAAAAGAAGACTATCCGTAT
CAAGAAACCGAAAACGAAGAAAGCCAAGGAACTGGAAATCGATCCGGAAA
CGGGCGAACCGGTCGAAAAAGAGGAAGGAGAAGAACCGGAACAAGAAGAT
GATGATTACACGCAATTTACGATGCGTCGTGAGAACATGCGTAAGATGTT
TCAAGAGATGCAGAAATACCAATTCGAACTGGCCCGAAACGACGAAGAAG
CTGCTTCAAAACCTGGCTTCAAAGTCATCGAGCAAGAAGACCTTGACAGG
TTCCATTCATTGCGACATACCGTAAAGAATACATCGAACCCGAATTGAAA
CGAGATGATTTGTGGAAAGTTTATGAATGGGATGAAAAATACACGCAATT
TACGATGCGTCGTGAGAACATGCGTAAGATGTTTCAAGAGATGCAGAAAT
ACCAATTCGAACTGGCCCGAAACGACGNGTTTTGAAGCTAAACAAGTGAC
AGCTATTCCGAGGATTCGCGCTGCACTCAGTTTCATGAAGAAAGATATGT
TTGAGATGATTTGTGGAAAGTATATGAATGGGATGAAAAAACTTGACACA
GCCGCCAACCTACAAGAATTGATGGACATTTACGTTCATTTCCAAGTGTA
CCATGGCAATGAAATGGTAGACATGAAAGAATGGAAAGCCAAAAATAAAC
CGGCACCCGAGAAGAAGATGAAAAAGAAGACTATCCGTATCAAGAAACCG
AAAACGAAGAAAGCCAAGGAACTGGAAATCGATCCGGAAACGGGCGAACC
GGTCGAAAAAGAGGAAGGAGAAGAACCGGAACAAGAAGATGATGATTACA
CGCAATTTACGATGCGTCGTGAGAACATGCGTAAGATGTTTCAAGAGATG
CAGAAATACCAATTCGAACTGGCCCGAAACGACGAAGAAGCTGCTTCAAA
ACCTGGCTTCAAAGTCATCGAGCAAGAAGACCTTGACAGGTTCCATTCAT
TGCGACATACCGTAAAGAATACATCGAACCCGAATTGAAACGAGATGATT
TGTGGAAAGTTTATGAATGGGATGAAAAATACACGCAATTTACGATGCGT
CGTGAGAACATGCGTAAGATGTTTCAAGAGATGCAGAAATACCAATTCGA
ACTGGCCCGAAACGACGNGTTTTGAAGCTAAACAAGTGACAGCTATTCCG
AGGATTCGCGCTGCACTCAGTTTCATGAAGAAAGATATGTTTGAGATGAT
TTGTGGAAAGTATATGAATGGGATGAAAAAACTTGACACAGCCGCCAACC
TACAAGAATTGATGGACATTTACGTTCATTTCCAAGTGTACCATGGCAAT
GAAATGGTAGACATGAAAGAATGGAAAGCCAAAAATAAACCGGCACCCGA
GAAGAAGATGAAAAAGAAGACTATCCGTATCAAGAAACCGAAAACGAAGA
AAGCCAAGGAACTGGAAATCGATCCGGAAACGGGCGAACCGGTCGAAAAA
GAGGAAGGAGAAGAACCGGAACAAGAAGATGATGATTACACGCAATTTAC
GATGCGTCGTGAGAACATGCGTAAGATGTTTCAAGAGATGCAGAAATACC
AATTCGAACTGGCCCGAAACGACGAAGAAGCTGCTTCAAAACCTGGCTTC
AAAGTCATCGAGCAAGAAGACCTTGACAGGTTCCATTCATTGCGACATAC
CGTAAAGAATACATCGAACCCGAATTGAAACGAGATGATTTGTGGAAAGT
TTATGAATGGGATGAAAAATACACGCAATTTACGATGCGTCGTGAGAACA
TGCGTAAGATGTTTCAAGAGATGCAGAAATACCAATTCGAACTGGCCCGA
AACGACGNGTTTTGAAGCTAAACAAGTGACAGCTATTCCGAGGATTCGCG
CTGCACTCAGTTTCATGAAGAAAGATATGTTTGAGATGATTTGTGGAAAG
TATATGAATGGGATGAAAAAACTTGACACAGCCGCCAACCTACAAGAATT
GATGGACATTTACGTTCATTTCCAAGTGTACCATGGCAATGAAATGGTAG
ACATGAAAGAATGGAAAGCCAAAAATAAACCGGCACCCGAGAAGAAGATG
AAAAAGAAGACTATCCGTATCAAGAAACCGAAAACGAAGAAAGCCAAGGA
ACTGGAAATCGATCCGGAAACGGGCGAACCGGTCGAAAAAGAGGAAGGAG
AAGAACCGGAACAAGAAGATGATGATTACACGCAATTTACGATGCGTCGT
GAGAACATGCGTAAGATGTTTCAAGAGATGCAGAAATACCAATTCGAACT
GGCCCGAAACGACGAAGAAGCTGCTTCAAAACCTGGCTTCAAAGTCATCG
AGCAAGAAGACCTTGACAGGTTCCATTCATTGCGACATACCGTAAAGAAT
ACATCGAACCCGAATTGAAACGAGATGATTTGTGGAAAGTTTATGAATGG
GATGAAAAATACACGCAATTTACGATGCGTCGTGAGAACATGCGTAAGAT
GTTTCAAGAGATGCAGAAATACCAATTCGAACTGGCCCGAAACGACGNGT
TTTGAAGCTAAACAAGTGACAGCTATTCCGAGGATTCGCGCTGCACTCAG
TTTCATGAAGAAAGATATGTTTGAGATGATTTGTGGAAAGTATATGAATG
GGATGAAAAAACTTGACACAGCCGCCAACCTACAAGAATTGATGGACATT
TACGTTCATTTCCAAGTGTACCATGGCAATGAAATGGTAGACATGAAAGA
ATGGAAAGCCAAAAATAAACCGGCACCCGAGAAGAAGATGAAAAAGAAGA
CTATCCGTATCAAGAAACCGAAAACGAAGAAAGCCAAGGAACTGGAAATC
GATCCGGAAACGGGCGAACCGGTCGAAAAAGAGGAAGGAGAAGAACCGGA
ACAAGAAGATGATGATTACACGCAATTTACGATGCGTCGTGAGAACATGC
GTAAGATGTTTCAAGAGATGCAGAAATACCAATTCGAACTGGCCCGAAAC
GACGAAGAAGCTGCTTCAAAACCTGGCTTCAAAGTCATCGAGCAAGAAGA
CCTTGACAGGTTCCATTCATTGCGACATACCGTAAAGAATACATCGAACC
CGAATTGAAACGAGATGATTTGTGGAAAGTTTATGAATGGGATGAAAAAT
ACACGCAATTTACGATGCGTCGTGAGAACATGCGTAAGATGTTTCAAGAG
ATGCAGAAATACCAATTCGAACTGGCCCGAAACGACGNGTTTTGAAGCTA
AACAAGTGACAGCTATTCCGAGGATTCGCGCTGCACTCAGTTTCATGAAG
AAAGATATGTTTGAGATGATTTGTGGAAAGTATATGAATGGGATGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039977XLOC_039977Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063762-exon-scaffold_40-1575043694:59706..60630TCONS_00063762-exon-scaffold_40-1575043694:59706..60630Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1575043694:58934..59111TCONS_00063762-exon-scaffold_40-1575043694:58934..59111Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1575043694:58250..58447TCONS_00063762-exon-scaffold_40-1575043694:58250..58447Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1575043694:57896..58003TCONS_00063762-exon-scaffold_40-1575043694:57896..58003Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1575043694:57088..57177TCONS_00063762-exon-scaffold_40-1575043694:57088..57177Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1575043694:56352..56517TCONS_00063762-exon-scaffold_40-1575043694:56352..56517Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1575043694:55645..55734TCONS_00063762-exon-scaffold_40-1575043694:55645..55734Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1575043694:54939..55081TCONS_00063762-exon-scaffold_40-1575043694:54939..55081Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1575043694:53967..54223TCONS_00063762-exon-scaffold_40-1575043694:53967..54223Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1510915933:59706..60630TCONS_00063762-exon-scaffold_40-1510915933:59706..60630Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1510915933:58934..59111TCONS_00063762-exon-scaffold_40-1510915933:58934..59111Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1510915933:58250..58447TCONS_00063762-exon-scaffold_40-1510915933:58250..58447Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1510915933:57896..58003TCONS_00063762-exon-scaffold_40-1510915933:57896..58003Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1510915933:57088..57177TCONS_00063762-exon-scaffold_40-1510915933:57088..57177Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1510915933:56352..56517TCONS_00063762-exon-scaffold_40-1510915933:56352..56517Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1510915933:55645..55734TCONS_00063762-exon-scaffold_40-1510915933:55645..55734Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1510915933:54939..55081TCONS_00063762-exon-scaffold_40-1510915933:54939..55081Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1510915933:53967..54223TCONS_00063762-exon-scaffold_40-1510915933:53967..54223Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1491911889:59706..60630TCONS_00063762-exon-scaffold_40-1491911889:59706..60630Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1491911889:58934..59111TCONS_00063762-exon-scaffold_40-1491911889:58934..59111Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1491911889:58250..58447TCONS_00063762-exon-scaffold_40-1491911889:58250..58447Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1491911889:57896..58003TCONS_00063762-exon-scaffold_40-1491911889:57896..58003Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1491911889:57088..57177TCONS_00063762-exon-scaffold_40-1491911889:57088..57177Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1491911889:56352..56517TCONS_00063762-exon-scaffold_40-1491911889:56352..56517Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1491911889:55645..55734TCONS_00063762-exon-scaffold_40-1491911889:55645..55734Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1491911889:54939..55081TCONS_00063762-exon-scaffold_40-1491911889:54939..55081Clytia hemisphaericaexon
TCONS_00063762-exon-scaffold_40-1491911889:53967..54223TCONS_00063762-exon-scaffold_40-1491911889:53967..54223Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063762-proteinTCONS_00063762-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:53967..60630 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.145563	0	0.110549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028088Spt6_HTH_DNA-bd_dom
IPR023319Tex-like_HTH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
[Close]
BLAST of TCONS_00063762 vs. Swiss-Prot (Human)
Match: SPT6H (Transcription elongation factor SPT6 OS=Homo sapiens GN=SUPT6H PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 4.419e-53
Identity = 118/237 (49.79%), Postives = 163/237 (68.78%), Query Frame = 3 
Query:  873 NQPIKTKKPRKR-SQYTDSALQEAQDIFGLEFDLSEF---DADGGFXXXXXXXXXXXXXXXIXXXXXXXXXXXGSRKSIYQVYEPSELEKGHLTMEDSKIRMADVPERFQLRPVPVKPAVDSELDEEAEWIYKQAFMIPPISQQNFQDPVDTNKVHNGFEAKQVTAIPRIRAALSFMKKDMFEVPFIATYRKEYIEPELKRDDLWKVYEWDEKYTQFTMRRENMRKMFQEMQKYQFE 1571
             QP+K  K RK+   YTD+ALQEAQ+IFG++FD  EF   +      +   E ++D    EI  +  K  KK+ SR+SI+++YEPSELE  HLT +D++IR  D+PERFQLR +PVK A D EL+EEA+WIY+ AF  P IS Q   D +D  +  + F  K  + I +I+ AL FM+   FEVPFIA YRKEY+EPEL  +DLW+V++WDEK+TQ  +R+EN+ ++F++MQ YQ+E
Sbjct:  190 GQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYNEYDEELEEEYEYEDDEAEGEIRVRPKKTTKKRVSRRSIFEMYEPSELESSHLTDQDNEIRATDLPERFQLRSIPVKGAEDDELEEEADWIYRNAFATPTISLQESCDYLDRGQPASSFSRKGPSTIQKIKEALGFMRNQHFEVPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKMQAYQYE 426

HSP 2 Score: 129.798 bits (325), Expect = 1.013e-30
Identity = 57/134 (42.54%), Postives = 89/134 (66.42%), Query Frame = 1 
Query: 1582 TTXFEAKQVTAIPRIRAALSFMKKDMFEVPFIATYRKEYIEPELKRDDLWKVYEWDEKYTQFTMRRENMRKMFQEMQKYQFELARNDEEAASKPGFKVIEQEDLDRLDTAANLQELMDIYVHFQVYHGNEMVDM 1983
             + F  K  + I +I+ AL FM+   FEVPFIA YRKEY+EPEL  +DLW+V++WDEK+TQ  +R+EN+ ++F++MQ YQ+E    D +     G + ++  D++RL    ++ EL D+Y HF +Y+G ++  M
Sbjct:  345 ASSFSRKGPSTIQKIKEALGFMRNQHFEVPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKMQAYQYEQISADPDKPLADGIRALDTTDMERLKDVQSMDELKDVYNHFLLYYGRDIPKM 478
The following BLAST results are available for this feature:
BLAST of TCONS_00063762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPT6H4.419e-5349.79Transcription elongation factor SPT6 OS=Homo sapie... [more]
back to top