TCONS_00063768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063768
Unique NameTCONS_00063768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063768 ID=TCONS_00063768|Name=TCONS_00063768|organism=Clytia hemisphaerica|type=transcript|length=765bp
GAGTCCATCCTCCTATACTCCTGTGAATCATGGTCACTTACGTCTACTCT
GACAAAGAAACTAGACGGAGCGTATACGAGAATGCtgagaaaagtcaaaa
acatccaGTCTTATATCTACATTACTAACAAAGTGTTGTACGGCAAGCTG
CACCGATTAAGTAGTCTTATCCAGAAAAGAAGATTGCAGTTAGCAGGTCA
CGTCATCAGAGGAAAAGAGCCGGCATCTAAACTTCTCCTTTGGCAGCCAA
CATTCTTAACAAAGAAGAGAGGTCGTCCACACAAGACACTACTCAAAGTC
TTAGAACAAGACACGGGACTTGACAAAGGTGAGATGGTTCGTTTGGCGCA
CAACAGGGTCAGATGGAAAGACATGGTCATGTCATCACTTTCAAGTGGAT
GATTTATGTATGTAAGTTTTGTATAAACGagtggaagaatccggtgttcc
agccttatagaatccccggctagctacgcagaaacttgcgtagggagaaa
acaatttatcaagcaacaaccagcaactcaaatgaaaaacacaaatccac
acaccattgtttttttaagaattttctttgagcgggaaaaaattataatt
gtaatattgacacttttcctttgtttggagttagtgcacaaaggtttcta
gactactaaaattgttccctccattactttttgctttgtttttactATGT
ataattagtcgtctagcttgctagcgACCAGCCAGtgaccatctaaaaag
aactCTGGAAAAACG
Run BLAST on NCBI

protein sequence of TCONS_00063768-protein

>TCONS_00063768-protein ID=TCONS_00063768-protein|Name=TCONS_00063768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
ESILLYSCESWSLTSTLTKKLDGAYTRMLRKVKNIQSYIYITNKVLYGKL
HRLSSLIQKRRLQLAGHVIRGKEPASKLLLWQPTFLTKKRGRPHKTLLKV
LEQDTGLDKGEMVRLAHNRVRWKDMVMSSLSSG
Run BLAST on NCBI

transcript from alignment at scaffold_40:62616..63380

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063768 ID=TCONS_00063768|Name=TCONS_00063768|organism=Clytia hemisphaerica|type=transcript|length=765bp|location=Sequence derived from alignment at scaffold_40:62616..63380 (Clytia hemisphaerica)
CGTTTTTCCAGagttctttttagatggtcaCTGGCTGGTcgctagcaagc
tagacgactaattatACATagtaaaaacaaagcaaaaagtaatggaggga
acaattttagtagtctagaaacctttgtgcactaactccaaacaaaggaa
aagtgtcaatattacaattataattttttcccgctcaaagaaaattctta
aaaaaacaatggtgtgtggatttgtgtttttcatttgagttgctggttgt
tgcttgataaattgttttctccctacgcaagtttctgcgtagctagccgg
ggattctataaggctggaacaccggattcttccactCGTTTATACAAAAC
TTACATACATAAATCATCCACTTGAAAGTGATGACATGACCATGTCTTTC
CATCTGACCCTGTTGTGCGCCAAACGAACCATCTCACCTTTGTCAAGTCC
CGTGTCTTGTTCTAAGACTTTGAGTAGTGTCTTGTGTGGACGACCTCTCT
TCTTTGTTAAGAATGTTGGCTGCCAAAGGAGAAGTTTAGATGCCGGCTCT
TTTCCTCTGATGACGTGACCTGCTAACTGCAATCTTCTTTTCTGGATAAG
ACTACTTAATCGGTGCAGCTTGCCGTACAACACTTTGTTAGTAATGTAGA
TATAAGACtggatgtttttgacttttctcaGCATTCTCGTATACGCTCCG
TCTAGTTTCTTTGTCAGAGTAGACGTAAGTGACCATGATTCACAGGAGTA
TAGGAGGATGGACTC

Coding sequence (CDS) from alignment at scaffold_40:62616..63380

>TCONS_00063768 ID=TCONS_00063768|Name=TCONS_00063768|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_40:62616..63380 (Clytia hemisphaerica)
TCATCCACTTGAAAGTGATGACATGACCATGTCTTTCCATCTGACCCTGT
TGTGCGCCAAACGAACCATCTCACCTTTGTCAAGTCCCGTGTCTTGTTCT
AAGACTTTGAGTAGTGTCTTGTGTGGACGACCTCTCTTCTTTGTTAAGAA
TGTTGGCTGCCAAAGGAGAAGTTTAGATGCCGGCTCTTTTCCTCTGATGA
CGTGACCTGCTAACTGCAATCTTCTTTTCTGGATAAGACTACTTAATCGG
TGCAGCTTGCCGTACAACACTTTGTTAGTAATGTAGATATAAGACtggat
gtttttgacttttctcaGCATTCTCGTATACGCTCCGTCTAGTTTCTTTG
TCAGAGTAGACGTAAGTGACCATGATTCACAGGAGTATAGGAGGATGGAC
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039982XLOC_039982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063768-exon-scaffold_40-1491911889:62616..63380TCONS_00063768-exon-scaffold_40-1491911889:62616..63380Clytia hemisphaericaexon
TCONS_00063768-exon-scaffold_40-1510915933:62616..63380TCONS_00063768-exon-scaffold_40-1510915933:62616..63380Clytia hemisphaericaexon
TCONS_00063768-exon-scaffold_40-1575043694:62616..63380TCONS_00063768-exon-scaffold_40-1575043694:62616..63380Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063768-proteinTCONS_00063768-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:62616..63380 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06438	1.53859	1.32673	1.85109	0	0.412059	0	0	0	0.255602	0	0	0.155298	0.443237	0.0721159	0.0408247	0.130875	0	0	0.0853065	0.156388	0	0.170583	0.0751046	0	0.159627	0.0907107	0.363328	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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