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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063804 ID=TCONS_00063804|Name=TCONS_00063804|organism=Clytia hemisphaerica|type=transcript|length=1230bp
GATGAATTGACTCTGAAGAGATGGGTGGTAACTCATCAAAACAATCTTCC
AGCAGAGCAACTGCCCTTGAAATATACGATTCAAATGTAGCTAGTCTAGC
TCGTAGATTTGACAAATCTGATTTCTCATCTCCAGAGGCATTGGTTAAGC
ACCTACAACCAGGTGACCTCGTCCAAGTGAAGGGTAGATACATATGGCAA
TGGTTTTATAGTCATTTTGCTGTTTACATTGGAAATGGTAACATAGTCCA
TATCAACAAGCCTGGTGACAAGAAACAAGGTGGAAAAGTATGGGTCGAAA
GGAGGGATATGGTCACTGAATTCATGGGGAAAGACGTAAGAAAAAACAAC
ACAATGGATGGATCCTTCAATGCTAGACGTGTACAAGATATTGTCAAAGA
GGCTAAAAGCTATGTTGGTGAGAAATGGGATTACAGTTTTTTGTACAATA
ACTGTGAGCATTTTGCATCAATGTGTCGATATGGGCGTAAGATCAGCTTG
CAGTCATTGTCAATGGTTGATGTTTACCGCAATGATCTCAGTCTTGGAGA
ATACATTGAGTATCATTTCAAATCAGCGAAATCAAAATGTGGCACATTAA
TCAGTTGGGTCAAACGAAAGGTTATAAGTGCAGCATCCATAATGGCAAAT
GCAGCTCAATTAGCTATCGGTTATTAACACTAAAATAGTGAACAAATTGA
AACAAACATTCTATTGcataaacattttattttaaagcaGACAAAATGAC
ATGCAAACTTTTATTTACTGGTTATTATGATACTGATCATCTTTTGTTGT
AAAAATCTTTTATAGGCTCTACTGTTCGCTATTCTTACTATTTAATTAGG
TTTATATGTTCTTTTACCCacatatctttaaaaaaatatatattgtaATG
TGAATAAGCAATCATAATTCATCCAAATATCATTTGTCGCAGTTTGACTA
ACTCCCCTAAATTAGGAATATCAAAGTCTTTTAAAGACTAAAGAGATCAA
AATTTAATGCATTAACCCAGGGATTCCACACGTAATATTAAGCATATTTA
CACAtttgtacttttttattttctggtttacggacattttgaggaaaagt
tttggaccggacgatgaaaaaaaaataaaaataaaattaatgttttttta
tttcctttttaaaaacctaaaatcggaggaaataataaaaaaataaaatt
ttatgaaatttcctaAGGTAtcgatttttt Run BLAST on NCBI transcript from alignment at scaffold_400:96418..97722- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063804 ID=TCONS_00063804|Name=TCONS_00063804|organism=Clytia hemisphaerica|type=transcript|length=1305bp|location=Sequence derived from alignment at scaffold_400:96418..97722- (Clytia hemisphaerica)
GATGAATTGACTCTGAAGAGATGGGTGGTAACTCATCAAAACAATCTTCC
AGCAGAGCAACTGCCCTTGAAATATACGATTCAAATGTAGCTAGTCTAGC
TCGTAGATTTGACAAATCTGATTTCTCATCTCCAGAGGCATTGGTTAAGC
ACCTACAACCAGGTGACCTCGTCCAAGTGAAGGGTAGATACATATGGCAA
TGGTTTTATAGTCATTTTGCTGTTTACATTGGAAATGGTAACATAGTCCA
TATCAACAAGCCTGGTGACAAGAAACAAGGTGGAAAAGTATGGGTCGAAA
GGAGGGATATGGTCACTGAATTCATGGGGAAAGACGTAAGAAAAAACAAC
ACAATGGATGGATCCTTCAATGCTAGACGTGTACAAGATATTGTCAAAGA
GGCTAAAAGCTATGTTGGTGAGAAATGGGATTACAGTTTTTTGTACAATA
ACTGTGAGCATTTTGCATCAATGTGTCGATATGGGCGTAAGATCAGCTTG
CAGTCATTGTCAATGGTTGATGTTTACCGCAATGATCTCAGTCTTGGAGA
ATACATTCAGTATCATTTCAAATCAGCGAAATCAAAATGTGGCACATTCA
TCAGTTGGGTCACACGAAAGNAAGAATACATTGAGTATCATTTCAAATCA
GCGAAATCAAAATGTGGCACATTAATCAGTTGGGTCAAACGAAAGGTTAT
AAGTGCAGCATCCATAATGGCAAATGCAGCTCAATTAGCTATCGGTTATT
AACACTAAAATAGTGAACAAATTGAAACAAACATTCTATTGCATAAACAT
TTTATTTTAAAGCAGACAAAATGACATGCAAACTTTTATTTACTGGTTAT
TATGATACTGATCATCTTTTGTTGTAAAAATCTTTTATAGGCTCTACTGT
TCGCTATTCTTACTATTTAATTAGGTTTATATGTTCTTTTACCCACATAT
CTTTAAAAAAATATATATTGTAATGTGAATAAGCAATCATAATTCATCCA
AATATCATTTGTCGCAGTTTGACTAACTCCCCTAAATTAGGAATATCAAA
GTCTTTTAAAGACTAAAGAGATCAAAATTTAATGCATTAACCCAGGGATT
CCACACGTAATATTAAGCATATTTACACATTTGTACTTTTTTATTTTCTG
GTTTACGGACATTTTGAGGAAAAGTTTTGGACCGGACGATGAAAAAAAAA
TAAAAATAAAATTAATGTTTTTTTATTTCCTTTTTAAAAACCTAAAATCG
GAGGAAATAATAAAAAAATAAAATTTTATGAAATTTCCTAAGGTATCGAT
TTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063804-exon-scaffold_400-1575043694:97169..97722 | TCONS_00063804-exon-scaffold_400-1575043694:97169..97722 | Clytia hemisphaerica | exon |
| TCONS_00063804-exon-scaffold_400-1575043694:96418..97093 | TCONS_00063804-exon-scaffold_400-1575043694:96418..97093 | Clytia hemisphaerica | exon |
| TCONS_00063804-exon-scaffold_400-1510915933:97169..97722 | TCONS_00063804-exon-scaffold_400-1510915933:97169..97722 | Clytia hemisphaerica | exon |
| TCONS_00063804-exon-scaffold_400-1510915933:96418..97093 | TCONS_00063804-exon-scaffold_400-1510915933:96418..97093 | Clytia hemisphaerica | exon |
| TCONS_00063804-exon-scaffold_400-1491911889:97169..97722 | TCONS_00063804-exon-scaffold_400-1491911889:97169..97722 | Clytia hemisphaerica | exon |
| TCONS_00063804-exon-scaffold_400-1491911889:96418..97093 | TCONS_00063804-exon-scaffold_400-1491911889:96418..97093 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_400 | supercontig | scaffold_400:96418..97722 - |
Blast
BLAST of TCONS_00063804 vs. Swiss-Prot (Human)
Match: HRSL4 (Retinoic acid receptor responder protein 3 OS=Homo sapiens GN=RARRES3 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.828e-16 Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = 3
Query: 156 QPGDLVQVKGRYIWQWFYSHFAVYIGNGNIVHINKPGDKKQGGKVWV---------ERRDMVTEFMGKDV-RKNNTMDGSFNARRVQDIVKEAKSYVGEKWDYSFLYNNCEHFASMCRYGR 488
+PGDL++ I++ Y H+A+YIG+G ++H+ P + G V +R+ + + +G R NN++D + R V+ I+ AK VG+K YS + NCEHF + RYG+
Sbjct: 9 KPGDLIE-----IFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGK 124
The following BLAST results are available for this feature:
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