TCONS_00063808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063808
Unique NameTCONS_00063808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2082

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063808 ID=TCONS_00063808|Name=TCONS_00063808|organism=Clytia hemisphaerica|type=transcript|length=2082bp
cccttccaacctactttagagcacttacaaatcgattgtggttcaaaaac
ttcccggtggatttcccttttttctcaaatattatgaccttgattgcagT
CCAGCCAGAACACGCCAGAAGCTTTTAGCAGgtGGATTGGAAGTTTGTAT
ACGATGACACCTGGCAATTCTACTACCAAACGTGAATACAGAAAGCTGAT
TGGCTGGCTATCAGACTCAATCATCAAAGCGAAACTAGATgaaatgaaat
tctttttggGAGTTCCAGCTggcaaaaatgagaaaattcaaACACCTTTG
GAATTTTTCCAATACATGGAGGGAGAAGGGCAACTAGgacaaaataattt
cgatacctTGATTGATATCATGGAAACTATTGGTCGTATTGACCTCGTGC
AacgaatcaaaaaatttcaagaaatttcaaaagaaactgAAGctCCCATC
ACTGTCGAGTTAGCACCGCAAACCTTCACATCTCCTCCAGGAAATCTATC
TTTGAACCTGCAAAGCCTCAGTCCAGGTCATGATGATCAATCAATCCAAA
GCATCAGTCCTGGAGCATCTGAAAGTATCGCCGAGGAAATGATACGCCCC
GAATTATCAGAAAAGGTGTTCACGCCACCGCCATTCCAACAAGCTGAGGA
ATCCTGTGGATCTCAGAACAGACAGACGTTTGTATTAACGTCGAATTATG
AAAATAAGAGCGGCGGATCAATGAAACAAGACCATCCAAAAGAAAGcaaa
gatattttaaaaagatataAAATGGATTCGAACCCACGTGGTATATTCTT
GATCATTAGTAACAGTGATTTTTCATTCGCTCTTGAGAAGAATGGTCTCA
CTATTAACGATAGAGACGGCACCATCAAAGATGTTGAACGTTTAGATAAG
ACCTTCACTGGATTACAGTTTGATATTAAAAAGTATCATGATTTAGATGC
GGAAAGTATGGAAAAATGTTTAGAATATTTCGCCACTTTAGATCATACTT
ATTATGATTGTTTTGCATGTTGTATTATGACTCATGGTACTGAATCCACA
CTTGTTGGGACTGATGGTGATGAAATACAACTAACCAATGTTCTCGGAAA
ATTTGAATCGGTTAAAAGTTTAATAGGTAAACCAAAACTATTCTTCTTTC
AAGCGTGTCGTGGAAAACCCGctaaaaaaccttattttacCAAAGATTCT
GCTCCTGGCGGTTATGGTGGAGCAAGTACTTGGGATGACAATATGTTTGG
GAAACGTTACACTCCACCATTGGGATCAGATTATTTCATTGGTTATGCAA
CACCACCGAACCACGACGCATGGTTAAGTAAAGATGGATCTTGGTATATC
ACAGCATTGTGCGAATCTTTAAATAAATACTCAGCCACCGATGATATTCA
CCATATTGCTACATATACAAACGATCTGGTGGCCCAGTATTCCCATGGTG
CTGGCATACCACAAATCCCAAATCCAACATATACTTTAAGAAAACAGTTG
TATTTTTTCCCTGAGAATATTGATACAGTGGTACGAACGGTGGCACcgaa
aaagaaatcgaaagAACCAGCTGAATCATGAAAATATGAATGTCCATTAT
TAAGTGGACATTAGGCTGAAGGCTGAagtcaaattttcaacatttcttCA
AACAGCACAAAAAGGTGAGACCTTGAATCTGCACCGTACTTTGGATAACA
GATTTAATCTACCTAGCGCGTTTTACACTTTTGGAAGTAATTTAACTTCT
AATCCAGCATTTGTATGCGTTTTTATGTTGCTTATATAATAGATTCGAAT
CTAGCCATCGACTACACCTTACTGAATTTACAGTATTGGCAGAAGAGGAT
TGACTTTGGATTTATAAATAAACTCTTAATGTTATtcacgaattttgaaa
ttcaatgaacaaaaacaaactttttttgatctAAAAAAAGATTTGTGAAC
TTGATTTAAAAGAATGTTGAATTTAAagcagaatctcaaaaaagtgaatt
tttgtcaattttttgcatttttttgacttttttgcttaaaatttcgctgg
aaagactcacttttgaatttttttttgcttga
Run BLAST on NCBI

transcript from alignment at scaffold_400:158229..170687-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063808 ID=TCONS_00063808|Name=TCONS_00063808|organism=Clytia hemisphaerica|type=transcript|length=12459bp|location=Sequence derived from alignment at scaffold_400:158229..170687- (Clytia hemisphaerica)
CCCTTCCAACCTACTTTAGAGCACTTACAAATCGATTGTGGTTCAAAAAC
TTCCCGGTGGATTTCCCTTTTTTCTCAAATATTATGACCTTGATTGCAGT
CCAGCCAGAACACGCCAGAAGCTTTTAGCAGGTTTGTACTAAACAGTTTC
TTTAATCTCAATTATTCTGCAATAATATACCTTTCCCTACTTTTTATATC
GTAGACAAGATCAAGGTCTTTCTCATATTACATTTTACTATTTTTTAAGA
CTAAGTTTTTCCAGACGATGTCAATCGAACGAATCGAACGCCGAATCAAT
TGAACGCAATTGAACACAATCGAATTATTGCAATTTGATTGTCGAACGCA
ATTGAATTGCAATCGAATATTACCCAGGATTTGCCGTTCGATTGCTTCAA
TTACGTTCGTAGATTTTATTCACTTTCGTACGGGACTTAAAAGCGCTCGG
CCGCCCACGCTAAAAAGCTCTAACGGGGCGCAATCAAACTCATCGAATAT
AATCGTAATTGAATGTAATTGACAATCAATCGAACCAATAGACCTTTTTT
CAAAGAGGACGTCCTGTTGAATAATTATGTACTCCAGCCATAAAAACAAT
GATAGAGCCATGCATAATTACTGGTTTTATCATTGTTTTTCTGATGGACT
ACATAATTATTCAACAGGGTGGCCTCTTTGAAAAAAGGTCTATTGAATAT
AAGCAACTATTAATCGAACCAATCTAACCTTACTCAAACGCAATTACCCA
GGATTCGGCCGTTCGATTAAGATTTGATTACGTTTGACAATCGAATCGCA
ATTATTTGATTACGTTCGCTTGGTTCGTCCACGCTAAAAAAGCTCTAAAG
GAGTGATCAAATTTAATTTAATTGCAATCAAACTTATCGAACATAAACGT
AATCAAACATAATTGAAGATCAATCAAAGGTAATTTCCTGGGGGGAATTA
CTTAGGCAAATGGATGGTACGGTATGAACCGCCCTTAAGGGTACCTTTTT
TGGACTTCCAAAGTCCCGCTAAGGGTCGGAAAAATCAGAAAATCAAATTT
CAGTCCAACTAAGGGTCGGAAAATTAGGAAAATTTCAACTTTTTACCCCC
TGAAAGATTGAAATTTGGTCCAAATTGGTCAAATTTGTCCCGCTAAGAGT
CGTAAAATTCCCAAAATGTTCCTTTGTTTTCTCCTTTTTAGTCCCGGTAA
GGGTCCAAAGTCTACCCCCCCCCGTCAGCTCGCAACCCGCAACCCTAGTA
CAGTGTGGATCTAACTCTCCATACAAAAATTACGGGAAACACATATTTAG
ACTTTGTACCCTATATACTGAGCCCCAGCACTTGAGCTGAAGTCCCGGAA
AAGGGGGAAAAAAATCAGTTTTTTGCAGTTTGCAAAAAAACGCCANATAT
TTAGACTTTGTACCCTATACTGAACCCCAGCACTTGAGCTGAATTCCCGG
AAAAACGGGAAAAAATCAGTTTTTTGCAGTTTGCAAAAAAAACGCCACAT
AGAACAGAAGATCTTTCAAATTCAGTATATGTGAATAGAGCAGTAAAAAC
TACAATTTTTAAATTTTTACTTTTTTTGCAAAAGCACTAGAAATGAAAAT
AAAAGGATAATCTGGGATACTGTAATGATGATTGAATACTATCCACTGAT
GATCCGAGGCTCCATTGTAAAGCTAGAATCGCTTCGCATACTCTTCGCAT
ACTCTTCGCTTGAGAAAACGATCGACCGGTTAAATTTTTCACCCGCGTGG
GAGCTCCTGGGCGTTCTGCGAGCAGTCTAGGCTCAATCACTGACCTTTAT
ATACCCTGGACAAAGCTTCTCAATCCCAGCCAAGCAAAATCTTTGATCGG
AGTTTTTTGAAAATTGGTACCCTAATGTCGGCACTACTCGATAGCGGTGT
AAATGCATCGAGAGCGCTAGGTCTACTTTTCCTCAAATTTTTTTGATGAT
GTAGCGGCATTAGACGTTAATTTTTAACATTGCAATGGCTTCTCCTTGGG
TACCAATTCTAAAAAAACTCCAATCAAAGATGGCAGATATTGTTTGGTCC
AGGGNNCAATCCTCGGACTGTGTTAAAAATGGTAGACTCAGCTGTGACAG
ATCATTTAGATGGAAGTTGTTGGAATGTTTACAAGACTCTTGACAGAAAA
TCTTTTGTTTTATTGTCAATAATGACAGTGCCGTTATTAATTTTGTTAGA
TCTGATATATTGATGTTTGTAAGTGCACTTTATAGTTTTGATTCCCATTG
AAGAATCATATTCTGGTTTTCATGTTATTAGATATGCTGTTTAGAGCTTT
AGAGCTACACTGTAGTACCCCCCCCCCCCGGGTAATTTACAATCAATTGA
ACCAATCAAACGTTACTCGAACGCTATTGAACACAATCGAATATTACCCA
AGAATCCTCCGTTCCATTGAGATTCGATTGTGAATCAACACAATTGAGAA
ATCTGTATATAATGTCTTCTAACTTTATTTTTTAGTATGTTTGAAACTGA
TATGTTTGAAACATTCAATTCAAAATGATTCTTCTTTCAAGTTCAAATTT
CCTTAGGTCGTGATCACGAACGCATAAATAACTTGTGTTTGCTTTTTGTT
TTTAGGTTTAAAAAAGAGTAGTTCCAGTCAGTGAAAAAAGGCAGCAAAAT
AGAGTCTCAAACTATGAGTCAGGCAGTATTGGAAATTGAAAATAAACAGC
TGCCGGTTTTGCCATGTTTAAGATGGACGGACCACGTTCCTTTGTTTTCA
GGATACGGCCCCTTTTTTATCAAATGCGCCATTTCTGTCTTTATGAATGA
CCAGGCTGGAAATGGTGCACAGTTTTTGGCGTATTGGCACAAGAGGCACC
CCCATTCTAACGCCCGATTTTATGACGCTAGGTTTAAGCGCATCCACCTT
GCTCGTAGAGTGTAAATATAATATAAAGCTTATGAGCAACTTTTAGGGGT
GAGAAAATCAAATATCCCAGGGCTTTTGGGGGCTTCGCCCCCTGAACCCC
ACCCAAGCCCTGGACACAGAACTTTTTTTTGGCGTAGACCTCAGTTTTTT
AAAACAAATATAACAATTCGGAGTGGACTTTGCATCATTTCCACACTGGA
TGAATGGGGAGATAATAGTACATTCCCACAAACCTGTAGGAAAGGGTTGA
ATATTATCTCTGTTTTATTTTGAAATTGAGCTCTTCGGTGTAATAATGTA
ATGTGCAATCAATAATTGAAGTAAAGATGGCAGTTTGTTCTTGCTTTTTC
ACTGGTATAACCATGGTAATATGATTTTTTATTTTTTTGCGGGGGGGAGA
ACCTAGGATGGTAGGGGGAAGCTCTAACGTAGGGGGTAATGACTCCTTCC
GAACTATGAATCAACTCTTTCCTAGTTTAAATAAAAAAAATTTTCATGTC
AAGAGTACAACATAGCACAAAAGCCATGGTTAACCATACATAGTTTTTTC
TCTCCATATATTGAATTGCATTCGCAAATGCAGTATAAACGTCACTTTTT
CATTTTTCCTATATACATACAAGAAACAGAATTCAAGATTCAAGCAGAAA
ATAGGTAACTTTTGTGCAGAATTTATTGGATCTCTTTTAACACACATAAA
TGAAATATTCTTTTCCGTAGATCAGATCCTTTTAATAAATACAAGCTTTT
TTGGTACAATTTATATTGATTGATGTTTAAATCATCTTTGCCTACCAGCA
CCTTATGTACATGCAGTATACCATGAACATATAAACGACTGGACATCCAT
CTCCTTTATCTTTTTGTAGAAAAGGCTGCTAGCTTCGTTGTCGCCTCGTT
AAAAGCACAAAATGAAACAATAGATTTTGATGATATACCACTTGGGAATA
CCTTGCTAACAACGTCAAAACTTCGACAAAAGTCTCTGTTGTTCTACTCT
TCTCAAGTCTTTTATCTTTATCATAACAAAGATAACAGAGGCAAAACCAT
CGTCAGCTTGTCAAAACTCAGACTAATATTTTTAAATTTTGACTTAAAAG
TGTCTAATAAGTTTAGAGAGTGTCACATTCTAATTTTGATATTCTTATTA
CACAGGCTCTCAACTTTGGCAAGCTATTTTTTTCAAGTCATAAAAAAAAT
TATTGGAGTGACAAAAGAGATTCAAAAGTATACACGCAGTTGAAATTCTG
CATTTCAGAGTTGAAAATGTTGATAAAATATATTGCAAACTTGTAAAAAA
ATTCGAAAATAATTTTTTTTGTACATTAGGAGTAATGTTCAAGATCTATC
AATCTTTTTACCTAAGTAATTCAAAGAAATAAAATTATAACGGAATGTTG
TCGGATTTTTCATATCAATTTTGAAATACAGGCGGCAACGAAGCTCGCTT
CAAAGAAACAATAAAAGATAGATGTCCAGTCGTTTATATGTTCATGAGTA
TACCAAATTTGAGGGAACTATCTGACTGACATTTGTTTCAAATTAGCATT
CCCGTTTCTATTTCTGTTCTTTCTATCTATTTGTTAAGTAATATAAGATG
TAAAACCCATACTGGACACGTGTAAAATTTAAGATAAATATTGTTGGTAT
TATGTACAAGTTTTGTTGAAATAAGGGAAAAGTGGAGAGATACTTGGAGT
AGGTATAGTACGGTCTAATTGTGTAAAAATTGTGCACAAAGGCGTGCAAG
CATGAAATTTTGCACAATTGTAGTTTAGGGGTCAAAAATGGATTTAAATC
TCAGACCCAAAAAATTGGCACATGTTTGTGTATTTTACAGGCCAGAACAG
GTTCCATGGCTAAATTGAATTTATTTTTCTCCAAAGTATATCATGTTACA
TACCGTTGGAAAGCATTTTTCATGCTTGTTTAGAAAAACATTACAACCTA
TATCTGAAAATGAAGCCAAAAAAAGTTATTGAGGAAGGCTTTTTAAAAAT
GAAGAAAAATGATGTAATTGCTGACGTCGGCAAAAATTCAAGGACCATAC
CTGAAAAAGTTTATGTCTATCAAATTAAATAGAGGACCTTTCAATGTCTA
AATGGATAGCTTTGATTGAGAGTTAAACTTACTTGACATTGAATATCGCG
TTTTTATGACCCTTCGAAAAAAAATTCATTTTAGCCTGGGAACCTGTTCT
GGTCTGTAAAATACACAAACAGGTGCCAATTTTTTGGATTGGATTGGATT
TAAATCCATTTTTAACCCCTAAACTACAATTGTGCAAAGTCTCGTGCTTG
TACGCCTTTGTGCACAATGTTATTGACTTTTGGCACATTTAGACTGCACT
AGTAGTGTATCTTAATAAGTGAAAATAATATGTAGTGGTTTAATTAGACA
AAAGACAAGATAATAGTTAGCAACTACACACCAGGATAGACTAGAGCAAG
ACTATAAAAAATATTAATAACTCATAATTAAGAGTATTGAGCAAACCTCA
GAATGATGCAAAGAGATTTAATTAATAGGAGATGCTAAGCACTGAAAGGA
TTAATGTTTTCTCACAAATATTGTTTATTTTAGGACAAGATGTTATCCAA
TTAGGGACTAAGGGGTCCCTCACACATTGATTTTTCCCACTAATAAAGTC
TTCTATTGTTTATTAGGTGGATTGGAAGTTTGTATACGATGACACCTGGC
AATTCTACTACCAAACGTGAATACAGAAAGCTGATTGGCTGGCTATCAGA
CTCAATCATCAAAGCGAAACTAGATGAAATGAAATTCTTTTTGGGAGTTC
CAGGTTTGTAAAAATTTATTCCAAATTGATCAGATGAGATGGAGTTTTTA
TAAGATACTTCAATAATTGGTCATTTGAAGTAATAAAGATGACGCGTTCT
TTAGAAAAAGTAACAAAATTGTTTTATTAATGGTTAACGACCAACCAAAT
CAAATAAGAGCTTGTAAAAACCCCATCTTGTCCCAAATTGATGGACTTAT
AAATAAAGAGAGAGAAAACATGAAAAATTTATTCCCATTCCAAAAAAAAT
AATTCTCTTGTTTATCCAGTAAAGTTGGTAATTTTAGGTAAACATTTACT
AATTGAACATGAATAAATTTTGGTGTATTGAGCCTAATGTTTTTATTGAA
AAGAGAAGTGTGGCTGCTGAAATATTTTTAAATTTTAGCCGGAAGAAATG
AGAAAAGATACACACCTTTAAAAATTTTCCAATACATGAAAATCTAGTTA
GCTGGTTTGCAAAGAAAACCTAGAAAATCTTTCTGTCATTTCTAGCTGGC
AAAAATGAGAAAATTCAAACACCTTTGGAATTTTTCCAATACATGGAGGG
AGAAGGGCAACTAGGACAAAATAATTTCGATACCTTGATTGATATCATGG
AAACTATTGGTCGTATTGACCTCGTGCAACGAATCAAAAAATTTCAAGAA
ATTTCAAAAGAAACTGAAGGTATTTCTTATATATTACTTCTCTTGTAATG
TGTCACTCAGTTAATGCAGCCATTTAAGATGTACGCCCAATGAAGTATAG
GCCCGAAGGGCTAGAAGTCAATCTCCTTGGTAGGATTTGAAGCCAACAAA
TCCTACCAAAGTTGCGCGGCCTTGAGCGGCTCGCCTGGTTTTTANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCAATCGTAAACAAAGGAATTGCTAGAT
TCAATCTGTCGTCAAAAATGCGGCGCATTTTTTAAGGCTTCACTTTTTCT
TGCCTGAGAAAGGTTAGAGATTGAAGTCTAGTCCTTCGGGCTTTAAACTC
AATGTGTACGCCATCACTGTGTACCCATAAACTTGTGACAGTATGAAGGT
CTAAGAATATGTTTCGGACCTTTTTATGCAGAATTCTTTCAGACGGTATA
GATATCATTATTTTAGTGTACTTTTTTAGAAATTGTTTATTCATATTTAT
ATTTGTTATATTTGTTATTCATTCATTCTCATTTTGATATTTTAGCTCCC
ATCACTGTCGAGTTAGCACCGCAAACCTTCACATCTCCTCCAGGAAATCT
ATCTTTGAACCTGCAAAGCCTCAGTCCAGGTCATGATGATCAATCAATCC
AAAGCATCAGTCCTGGAGCATCTGAAAGTATCGCCGAGGAAATGATACGC
CCCGAATTATCAGAAAAGGTGTTCACGCCACCGCCATTCCAACAAGCTGA
GGAATCCTGTGGATCTCAGAACAGACAGACGTTTGTATTAACGTCGAATT
ATGAAAATAAGAGCGGCGGATCAATGAAACAAGACCATCCAAAAGAAAGC
AAAGATATTTTAAAAAGATATAAAATGGATTCGAACCCACGTGGTATATT
CTTGATCATTAGTAACAGTGATTTTTCATTCGCTCTTGAGAAGAATGGTC
TCACTATTAACGATAGAGACGGCACCATCAAAGATGTTGAACGTTTAGAT
AAGACCTTCACTGGATTACAGTTTGATATTAAAAAGTATCATGATTTAGA
TGCGGAAAGTATGGAAAAATGTTTAGAATATTTCGCCACTTTAGATCATA
CTTATTATGATTGTTTTGCATGTTGTATTATGACTCATGGTACTGAATCC
ACACTTGTTGGGACTGATGGTGATGAAATACAACTAACCAATGTTCTCGG
AAAATTTGAATCGGTTAAAAGTTTAATAGGTAAACCAAAACTATTCTTCT
TTCAAGCGTGTCGTGGAAAACCCGCTAAAAAACCTTATTTTACCAAAGAT
TCTGCTCCTGGCGGTTATGGTGGAGCAAGTACTTGGGATGACAATATGTT
TGGGAAACGTTACACTCCACCATTGGGATCAGATTATTTCATTGGTTATG
CAACACCACCGAGTAAGTTAATCACATTTCCTCGCATTTTAAATTTGCTT
GCCAAACATTTTTTCTCACAGACTAAATTGTGTCTCACAGACTAAATTGT
GTTACATAGCCTCGGCTGTTTTTTGTTTGTATTTTTCTTTGCTTTGTTTT
GAAAAATCAGCTTTAGATGTTCTAAAGATAGTATTTACTTTCTCTTTTCC
AAGTACTTAAAAGGCGCTGAAAGGATGTTTCTTCCTCAGTAAATTCAAGA
ATATGTGGTTTGATCGCCCAATAGTTCCCCTACTAATAGCCAATTTTCAA
TTGTAAAAATATTCTCCTGTATAAAACGTGCAGTATTCCGTTCCGCTCCG
CTCCGAACCAAAATGAAGCCAATCATGGTTTCTAACCCCCCCTACATTTA
GGGGTGGTCTTGGGTTTTGATGAACCAAAAGCAAGGGGGTGTTAAAAGTA
TGACTTTCCTAAGGGGGGTTGTCAGTTAAGGGGGGGTCTTCTTACCTAAG
GGGGGTCTTCTTAGATAAGGGGGGTCTTCTTAGATAAGGGGGATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCAAAAT
GGCAATGCCCAGAACGTGACGGAGCCCGATTTTTGAGAAAAAATTTATTT
GGGCAAATTTGGGCCAAAAACTACCTAAAAAAGGGTTTTTTGGACTTTGT
GCAAAATCCTGTCATTACTTTTTCCTGATTTTTTGTACAAAGATGGAAAG
CAAGATTCTCTAAAGAATGGCTGAAGTGGTTTTTCCCGGAAAATTCTTAT
TCGCCTTAAAAAACGGATTTTCATATTTTGGGGGAAATTCCCTTTAACCA
AATAAGAAAATATAGCTTTTAACAATGTTGATTCAAAATTTTTTTTGATT
TTTTGCACAATGATGCAAAATGGCAATGCCCAAAATGTGACGAAGCAAGA
TTTTTAAGGAAAATTATTTTGTGCAAATTTGGGCCAAAAACAGCTTAAAA
GGTTTTTTGGGCCTGAATGGTTCAAGTGATTTTCGTATTTGGGGAAATTC
CTTTTTACCATTTTACATTATTCAACACACAAGCTTTATATTTCCATTCT
GAATTTTTGTACAATTTTTGTCACTTTTTTCTTATTTTCATCTGATGTTA
ATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTTCATTTATACTGATT
TTCTAAGGGGGGGGGTGAAATTTTAAATTAATTTCCTAAGGAGGGGTTAG
CACTTAAGGGGGGGGGGGCCTCTTACCACAGGAAAAAATTTTCGATTTCC
AAGGTTGGAAATTCAATATTTTTGGGTTGGAAATTCAATATTTTTGGGTT
GGAAATTTTTGTTTTATAATTGAAGATTGGAAATTTCAGCGATTACCTTA
AGCTGATTTGGAAAACGTAAATTACCCATAGGTTTTGTAGAATAAACCAA
CGCCCTTAAAAAATCAAGTGAAAAAAACTCATGTAGAAATGACAATTTTC
CAAGGCTAGTTGGAAAACATGACTTTTTGGGTGGGAAATTTGTGTTTCTC
CAAACAGTTTGGAAAACGTTAAAAATCCATGTGGAAATTACGTTTTTGTA
ACCATTTTCTGCGCATGTCCTTTGAGAAAACCACAAGTGATTTTTCGCTC
AAAACTGGTTTGATGTATAGCTACAGCTGTAACCTAGATGTTAGGCTATA
ATGTGAGCAGTCAAGCTGTACGTTTCGGTCAGGTGAGGCGTCCCTTCGGA
GTGGACTCGGTCAATCGCAGTGAGTTTGCACAGTGAAGCACATAGGGTAC
TTGTGTCATAGTTCCAAATGGTGCCCTGCTGAGCTGTGTGAGTGATCTAA
GATCAACCACATATCTGTGCGAACAATAACGAGAGATTGACCGGGAGCCA
TCGAGCCTAGGCTAGCGAATGACTGTTCACAAAGACAAAGACCTTGTTTT
AAGATCTCTTTTTCCACATCTCTGCCATCACTTTTTGGATTTTAGCTTTT
TTCAACCTGAATTTTTGAAAATTCCAACCTTTTTTAGCTTGGATTTTGGC
TTTTTTCCAACGGAATTTTAAAAAAATCCAACCTTGTTTAGCTAGGATTT
TGGCTTTTTTCCAACTGAATTTTAAAAAATTCCAACCTTGTTAAATTTGG
ATTTTGGCTTTTTTCAACCTGGATTTACGAAAATTCCAACCTTGTTAAAT
TTGGATTTTGGCTTTTTTCAACCTGGATTTACGAAAATTCCAACCTTGTT
TGGTTTGGATTTTGGCTTTTTTCAACCTAGATTTTCGAAAATTCCAACCT
TGTTTGGTTTGGATTTTGGCTTATTCCACCTGGATTTTTGAAAATTCCAA
CCTTGTTCAATTTGGATTTTGGCTTTTTTCCAACTGAATTTTAAAAAATT
CCAACCCCAACCTTATTAAATTTGGATTTTGGCTTTTTTCAATCTGGATT
TTTGAAAATTCCAAGCCATGGAAAATGTAAAATTTCCAACCTTGGAGAAT
GTCCCAGCCACATTTCCAGGTTGGATTTTCCATTGGATTTTATCTATTTT
CCAATAAAGAAAACATGAAATTTCCAACCTTGGAAATCGAAATTTTTTCC
TGTGTTACCTAAGGGGGAGTCTTGACCCCTCTAGAAACTATGCCATTCTA
TTGGTTAAATTCAAGTTTTACGTCACTTCTGACACCAATAGAATGGCTTC
GTTTCGTCTAAGTCTTGAACTGAATGTTTCTTTTAGACCACGACGCATGG
TTAAGTAAAGATGGATCTTGGTATATCACAGCATTGTGCGAATCTTTAAA
TAAATACTCAGCCACCGATGATATTCACCATATTGCTACATATACAAACG
ATCTGGTGGCCCAGTATTCCCATGGTGCTGGCATACCACAAATCCCAAAT
CCAACATATACTTTAAGAAAACAGTTGTATTTTTTCCCTGAGAATATTGA
TACAGTGGTACGAACGGTGGCACCGAAAAAGAAATCGAAAGAACCAGCTG
AATCATGAAAATATGAATGTCCATTATTAAGTGGACATTAGGCTGAAGGC
TGAAGTCAAATTTTCAACATTTCTTCAAACAGCACAAAAAGGTGAGACCT
TGAATCTGCACCGTACTTTGGATAACAGATTTAATCTACCTAGCGCGTTT
TACACTTTTGGAAGTAATTTAACTTCTAATCCAGCATTTGTATGCGTTTT
TATGTTGCTTATATAATAGATTCGAATCTAGCCATCGACTACACCTTACT
GAATTTACAGTATTGGCAGAAGAGGATTGACTTTGGATTTATAAATAAAC
TCTTAATGTTATTCACGAATTTTGAAATTCAATGAACAAAAACAAACTTT
TTTTGATCTAAAAAAAGATTTGTGAACTTGATTTAAAAGAATGTTGAATT
TAAAGCAGAATCTCAAAAAAGTGAATTTTTGTCAATTTTTTGCATTTTTT
TGACTTTTTTGCTTAAAATTTCGCTGGAAAGACTCACTTTTGAATTTTTT
TTTGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040001XLOC_040001Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063808-exon-scaffold_400-1575043694:170557..170687TCONS_00063808-exon-scaffold_400-1575043694:170557..170687Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1575043694:164985..165121TCONS_00063808-exon-scaffold_400-1575043694:164985..165121Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1575043694:164319..164492TCONS_00063808-exon-scaffold_400-1575043694:164319..164492Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1575043694:162776..163642TCONS_00063808-exon-scaffold_400-1575043694:162776..163642Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1575043694:158229..159001TCONS_00063808-exon-scaffold_400-1575043694:158229..159001Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1510915933:170557..170687TCONS_00063808-exon-scaffold_400-1510915933:170557..170687Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1510915933:164985..165121TCONS_00063808-exon-scaffold_400-1510915933:164985..165121Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1510915933:164319..164492TCONS_00063808-exon-scaffold_400-1510915933:164319..164492Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1510915933:162776..163642TCONS_00063808-exon-scaffold_400-1510915933:162776..163642Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1510915933:158229..159001TCONS_00063808-exon-scaffold_400-1510915933:158229..159001Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1491911889:170557..170687TCONS_00063808-exon-scaffold_400-1491911889:170557..170687Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1491911889:164985..165121TCONS_00063808-exon-scaffold_400-1491911889:164985..165121Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1491911889:164319..164492TCONS_00063808-exon-scaffold_400-1491911889:164319..164492Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1491911889:162776..163642TCONS_00063808-exon-scaffold_400-1491911889:162776..163642Clytia hemisphaericaexon
TCONS_00063808-exon-scaffold_400-1491911889:158229..159001TCONS_00063808-exon-scaffold_400-1491911889:158229..159001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_400supercontigscaffold_400:158229..170687 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.2075	12.9948	8.00978	7.46891	12.3457	9.193	10.9387	11.9101	7.89705	12.9018	13.4824	6.37829	20.5531	16.0389	13.228	15.9853	10.4295	12.4759	18.5728	17.1718	5.76189	7.71869	15.7774	19.6747	15.2501	16.8694	7.4253	7.95714	14.6774	16.7156
Blast
[Close]
BLAST of TCONS_00063808 vs. Swiss-Prot (Human)
Match: CASP8 (Caspase-8 OS=Homo sapiens GN=CASP8 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.447e-42
Identity = 140/466 (30.04%), Postives = 215/466 (46.14%), Query Frame = 1 
Query:  262 VPAGKNEKIQTPLEFFQYMEGEGQLGQNNFDTLIDIMETIGRIDLVQRI--KKFQEISKETEAP----------ITVELAPQTFTSPPGNLSLNLQ---SLSPGHDDQSIQSISPGASESIA---------------------------EEMIRPELSEKVFTPPPFQQAEESCGSQNRQTFVLTSNYENKSGGSMKQDHPKESKDILKRYKMDSNPRGIFLIISNSDFSFALEK--NGLTINDRDGTIKDVERLDKTFTGLQFDIKKYHDLDAESMEKCLEYFATLDHTYYDCFACCIMTHGTESTLVGTDGDEIQLTNVLGKFESVK--SLIGKPKLFFFQACRGKPAKK--PYFTKDSAPGGYGGASTWDDNMFGKRYTPPLGSDYFIGYATPPNHDAWLS-KDGSWYITALCESLNKYSAT-DDIHHIATYTNDLVAQYSHGAGI-PQIPNPTYTLRKQLYF 1506
            +P  K E I+  L  FQ ++ +  L ++N   L +++  I R+DL+      + +E+ +E + P          +  +++ +   S   +    LQ   S     DD ++  I     + +                            EE  +   S    +P  F   EE CG       V+T      S    +QD   ES+ + K Y+M S PRG  LII+N +F+ A EK     +I DR+GT  D   L  TF  L F+IK + D   E + + L+ +  +DH+  DCF CCI++HG +  + GTDG E  +  +  +F  +K  SL GKPK+FF QAC+G   +K  P  T DS    Y      D +    RY P   +D+ +G AT  N  ++ +  +G+WYI +LC+SL +     DDI  I T  N  V+       +  Q+P PT+TLRK+L F
Sbjct:   30 IPQRKQEPIKDALMLFQRLQEKRMLEESNLSFLKELLFRINRLDLLITYLNTRKEEMERELQTPGRAQISAYRVMLYQISEEVSRSELRSFKFLLQEEISKCKLDDDMNLLDIFIEMEKRVILGEGKLDILKRVCAQINKSLLKIINDYEEFSKERSSSLEGSPDEFSNGEELCG-------VMTI-----SDSPREQD--SESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGIPVET-DSEEQPY---LEMDLSSPQTRYIPD-EADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSNKDDKKNMGKQMPQPTFTLRKKLVF 476
The following BLAST results are available for this feature:
BLAST of TCONS_00063808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CASP85.447e-4230.04Caspase-8 OS=Homo sapiens GN=CASP8 PE=1 SV=1[more]
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