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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063815 ID=TCONS_00063815|Name=TCONS_00063815|organism=Clytia hemisphaerica|type=transcript|length=1309bp
gtttttatgaattttttatcAACTTTCTCAAATCTTGTTTTACTTATTAT
GcgttttgtttcttaaaatataGATTCACATATTAATTTCCAGAGCAACA
CTGCTAGAGGTGGAAAAAGTCGACacggaaaaaaagtgaaaactttTGAG
AAAGCACTGTTGGAGCTCTCTACTGTATGATTTGaactaaaaaagaagaa
aaatctacaaatagCAATAGAAGGGAGAGAGAGACATAGAAGAGAAGGAG
GAAAGCAAATCGAGAAATCACTGCATTTGAGGTGGAAGTATATTTTGCAG
CATGGCGAATCCAGATATGGCTGGTTTTCGCGTGTTCACAATCAATATGG
CTTGTGCCGCTGATCCGAATCAAGAGAGCAACAAATCTCGAAGAAGCGCC
ATTTCAGCATTAATTCATGAGCAAGATCCAGATATTATTTTATTGCAAAA
TGTCAACAGACGACGTGATGTTGAATTCATTGACTTCATGTTAGCCAAAG
TGTGGCGACATTATAATTATTACATGAAACGAGTACGTAGCTCGACCGCC
ATTATGGCAAAAGCTAATCTGTTTGCAGTTGATAAAGTGAAGTTTTCGGA
TCTAAATATCATTGGTACAGCTGAGCAAAAAGATATGATTCAAAACCACC
TTTCCTTAGTCCGGTTGACACATAAGGCGTCgaaaaatttcatgtttgtC
GGCTCGTGGTCGTGTCCAGTGCACATCGGAATGACGGATGAGAAAAAGAA
ACGGATCTCCAGTCTGTTAATTTCGATGATGCGTAGAGAAGCTGTCGGAG
CATTCTGGGTCATTGGAGGTGATTTTAATATAGCTTATGATCAAAGCAGT
ATTCGAATGGCACAAAAAACGGGCGATGAATTCTTTAATTTGGTTGAAGA
TACAGGCCGCGTGGCGTGCTCGGAAGACAACTCTGATAACTATTTTGTGT
TTTCAGGTAAGAGTGCTCATAGGCGTATGACTCTAAAGACAGTAGAAACA
CCGAAATGCAACGTTGAGAAACAACAAAAAGCATTAAATTGCTACCCTCT
GATTGGTCTAGTTACGATCACGTGGGCAGCGGCAAGTCCTAGACACAGTC
TCCCATCACCAACGCAACAacagcaaattttcatgtaaaCCCTTTATAAC
ATTTTTGACTTTCATGATTATACAATTTTATAGCTCCATATTTTTTACCA
AATATCAATGGAGTCCATAGAAAACGCTGAAAAAAGTTTCATGAATGAAT
CAGGTGAAAGTTACTGCAATAAAATGACTGAAGAGAAACGCTACAAGATC
ATTTACCTG Run BLAST on NCBI protein sequence of TCONS_00063815-protein >TCONS_00063815-protein ID=TCONS_00063815-protein|Name=TCONS_00063815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MANPDMAGFRVFTINMACAADPNQESNKSRRSAISALIHEQDPDIILLQN
VNRRRDVEFIDFMLAKVWRHYNYYMKRVRSSTAIMAKANLFAVDKVKFSD
LNIIGTAEQKDMIQNHLSLVRLTHKASKNFMFVGSWSCPVHIGMTDEKKK
RISSLLISMMRREAVGAFWVIGGDFNIAYDQSSIRMAQKTGDEFFNLVED
TGRVACSEDNSDNYFVFSGKSAHRRMTLKTVETPKCNVEKQQKALNCYPL
IGLVTITWAAASPRHSLPSPTQQQQIFM Run BLAST on NCBI transcript from alignment at scaffold_400:227265..228573 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063815 ID=TCONS_00063815|Name=TCONS_00063815|organism=Clytia hemisphaerica|type=transcript|length=1309bp|location=Sequence derived from alignment at scaffold_400:227265..228573 (Clytia hemisphaerica)
CAGGTAAATGATCTTGTAGCGTTTCTCTTCAGTCATTTTATTGCAGTAAC
TTTCACCTGATTCATTCATGAAACTTTTTTCAGCGTTTTCTATGGACTCC
ATTGATATTTGGTAAAAAATATGGAGCTATAAAATTGTATAATCATGAAA
GTCAAAAATGTTATAAAGGGtttacatgaaaatttgctgtTGTTGCGTTG
GTGATGGGAGACTGTGTCTAGGACTTGCCGCTGCCCACGTGATCGTAACT
AGACCAATCAGAGGGTAGCAATTTAATGCTTTTTGTTGTTTCTCAACGTT
GCATTTCGGTGTTTCTACTGTCTTTAGAGTCATACGCCTATGAGCACTCT
TACCTGAAAACACAAAATAGTTATCAGAGTTGTCTTCCGAGCACGCCACG
CGGCCTGTATCTTCAACCAAATTAAAGAATTCATCGCCCGTTTTTTGTGC
CATTCGAATACTGCTTTGATCATAAGCTATATTAAAATCACCTCCAATGA
CCCAGAATGCTCCGACAGCTTCTCTACGCATCATCGAAATTAACAGACTG
GAGATCCGTTTCTTTTTCTCATCCGTCATTCCGATGTGCACTGGACACGA
CCACGAGCCGacaaacatgaaatttttcGACGCCTTATGTGTCAACCGGA
CTAAGGAAAGGTGGTTTTGAATCATATCTTTTTGCTCAGCTGTACCAATG
ATATTTAGATCCGAAAACTTCACTTTATCAACTGCAAACAGATTAGCTTT
TGCCATAATGGCGGTCGAGCTACGTACTCGTTTCATGTAATAATTATAAT
GTCGCCACACTTTGGCTAACATGAAGTCAATGAATTCAACATCACGTCGT
CTGTTGACATTTTGCAATAAAATAATATCTGGATCTTGCTCATGAATTAA
TGCTGAAATGGCGCTTCTTCGAGATTTGTTGCTCTCTTGATTCGGATCAG
CGGCACAAGCCATATTGATTGTGAACACGCGAAAACCAGCCATATCTGGA
TTCGCCATGCTGCAAAATATACTTCCACCTCAAATGCAGTGATTTCTCGA
TTTGCTTTCCTCCTTCTCTTCTATGTCTCTCTCTCCCTTCTATTGctatt
tgtagatttttcttcttttttagttCAAATCATACAGTAGAGAGCTCCAA
CAGTGCTTTCTCAaaagttttcactttttttccgtGTCGACTTTTTCCAC
CTCTAGCAGTGTTGCTCTGGAAATTAATATGTGAATCtatattttaagaa
acaaaacgCATAATAAGTAAAACAAGATTTGAGAAAGTTgataaaaaatt
cataaaaac Coding sequence (CDS) from alignment at scaffold_400:227265..228573 >TCONS_00063815 ID=TCONS_00063815|Name=TCONS_00063815|organism=Clytia hemisphaerica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_400:227265..228573 (Clytia hemisphaerica)
ttacatgaaaatttgctgtTGTTGCGTTGGTGATGGGAGACTGTGTCTAG
GACTTGCCGCTGCCCACGTGATCGTAACTAGACCAATCAGAGGGTAGCAA
TTTAATGCTTTTTGTTGTTTCTCAACGTTGCATTTCGGTGTTTCTACTGT
CTTTAGAGTCATACGCCTATGAGCACTCTTACCTGAAAACACAAAATAGT
TATCAGAGTTGTCTTCCGAGCACGCCACGCGGCCTGTATCTTCAACCAAA
TTAAAGAATTCATCGCCCGTTTTTTGTGCCATTCGAATACTGCTTTGATC
ATAAGCTATATTAAAATCACCTCCAATGACCCAGAATGCTCCGACAGCTT
CTCTACGCATCATCGAAATTAACAGACTGGAGATCCGTTTCTTTTTCTCA
TCCGTCATTCCGATGTGCACTGGACACGACCACGAGCCGacaaacatgaa
atttttcGACGCCTTATGTGTCAACCGGACTAAGGAAAGGTGGTTTTGAA
TCATATCTTTTTGCTCAGCTGTACCAATGATATTTAGATCCGAAAACTTC
ACTTTATCAACTGCAAACAGATTAGCTTTTGCCATAATGGCGGTCGAGCT
ACGTACTCGTTTCATGTAATAATTATAATGTCGCCACACTTTGGCTAACA
TGAAGTCAATGAATTCAACATCACGTCGTCTGTTGACATTTTGCAATAAA
ATAATATCTGGATCTTGCTCATGAATTAATGCTGAAATGGCGCTTCTTCG
AGATTTGTTGCTCTCTTGATTCGGATCAGCGGCACAAGCCATATTGATTG
TGAACACGCGAAAACCAGCCATATCTGGATTCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063815-exon-scaffold_400-1491911889:227265..228573 | TCONS_00063815-exon-scaffold_400-1491911889:227265..228573 | Clytia hemisphaerica | exon |
| TCONS_00063815-exon-scaffold_400-1510915933:227265..228573 | TCONS_00063815-exon-scaffold_400-1510915933:227265..228573 | Clytia hemisphaerica | exon |
| TCONS_00063815-exon-scaffold_400-1575043694:227265..228573 | TCONS_00063815-exon-scaffold_400-1575043694:227265..228573 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_400 | supercontig | scaffold_400:227265..228573 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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