TCONS_00063825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063825
Unique NameTCONS_00063825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063825 ID=TCONS_00063825|Name=TCONS_00063825|organism=Clytia hemisphaerica|type=transcript|length=308bp
TTTTGGTGGTGTGGTTCAAGGTGATTAACGCTAGTTTTTGGAAATAATAA
GAGGGGGTAAATATATTCAAAGCACATGTATGAAGTACATCTTTTACCTT
TGGTAGATTCGAGTGGTGTATATATACcgtgtgatttcttttttttttTG
TTGCTTGACAGAAACTTTCAGTTCGCCATTTTCTTCGTCTGTATGTATTG
GTAGATCAGCCAATCACAGCGCGTTGATTGTGAGGATTACGTCACCTTTT
TAATTCCTAATTGTACGGTAAACGATAAATGTACTGATACGAGATTTTAC
ATTGAACT
Run BLAST on NCBI

transcript from alignment at scaffold_401:70584..70891

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063825 ID=TCONS_00063825|Name=TCONS_00063825|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at scaffold_401:70584..70891 (Clytia hemisphaerica)
AGTTCAATGTAAAATCTCGTATCAGTACATTTATCGTTTACCGTACAATT
AGGAATTAAAAAGGTGACGTAATCCTCACAATCAACGCGCTGTGATTGGC
TGATCTACCAATACATACAGACGAAGAAAATGGCGAACTGAAAGTTTCTG
TCAAGCAACAaaaaaaaaaagaaatcacacgGTATATATACACCACTCGA
ATCTACCAAAGGTAAAAGATGTACTTCATACATGTGCTTTGAATATATTT
ACCCCCTCTTATTATTTCCAAAAACTAGCGTTAATCACCTTGAACCACAC
CACCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040016XLOC_040016Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063825-exon-scaffold_401-1491911889:70584..70891TCONS_00063825-exon-scaffold_401-1491911889:70584..70891Clytia hemisphaericaexon
TCONS_00063825-exon-scaffold_401-1510915933:70584..70891TCONS_00063825-exon-scaffold_401-1510915933:70584..70891Clytia hemisphaericaexon
TCONS_00063825-exon-scaffold_401-1575043694:70584..70891TCONS_00063825-exon-scaffold_401-1575043694:70584..70891Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_401supercontigscaffold_401:70584..70891 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.907716	0	2.97202	1.5267	0.937534	2.15546	1.95408	1.59797	0.371521	1.56233	2.05373	1.99836	0.406754	0.888691	0	0.826755	0	1.22384	0.692586	0.506729	0	0	1.99812	3.71421	1.53359	0	0.4151	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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