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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063840 ID=TCONS_00063840|Name=TCONS_00063840|organism=Clytia hemisphaerica|type=transcript|length=1111bp
TTTCATCACTACTTGAATCACCAAATGTCAAAACCTCGTTAAAGCATGAA
GATCACGAAAAAGCTAATATACTTCAACGACAGTTCTGCAGTGTATTCAC
AAAAGAAGCAGTAGGTGAGCTTCCTGCATTTGAAAAGAGAACTGAttcat
ccatccatccatcggAGATATTCATATCTCTGAGGAGATGGTACAGAATC
AATTGAAAGAGCTCAACCATAATAAGTCATTCGGTCCAGACGAAATACAC
CCTAGGATACTAGCGGAATTATCTGACTATCTGTCTTTACCCTTGGCTGT
AATCATGAACAAATCTTTAGTTGAAGGCTCATTACCACAAGATTGGAAGG
TGGCATATGTCACACCTATCTACAAAAACAAGGGACCTCAGAATTTGGCA
GGCAATTATCGACCTGTTAGTTTGACATCGGTAGTGTGCAAATTAATGGA
ATCAATACTGAAGCACCTTTCTGATCATAATCTTTTATCGAACAAACAAT
ATGGCTTCATTAACAACCGCTCAACCGTGACACAGCTTTTGTTCTCTCTG
GATAAATGTTATGAGAGCATCTCTAAAGGACACGTTGTTGATAGTATCCA
CTTCGATTTTGCTAAGGCTTTCGACACTGTACCCCACCGTCGACTATGCA
AGAAACTATCAGCATATGGGATCAACGGTTCAATCTTAAAATGGATAACG
TCATTTCTAACAGGTCGAACTCAATCAGTAAAAGTGAACCAGTCCTTCTC
GACTACAGACCCTGTAGTGAGTGGTATTCCACAGGGTAGTGTACTGGGAC
CAATACTGTCCGTGCTATACATCAATGATCTTCCTGAAAAGGTCATNNAA
AGTGTCACGTTCTGACGCTAGGAAAGTTTGGAAACATCAAACATGCTCAT
CCATATTCCCTAGATGGACGCCAATTGGAACAcgtctttgaagaaaaaga
tctGGAATCCTCATTGACTCAGAACTTACATTTGAAGAACACATTGCAAA
GcaagtcaaaaaagaaaacgcgATACTTGGCATAATCAATCGAGGATTTG
TAAACATGATTACAAGTACATTTAAAACATTGTATTGTGCGTTTGTTCGC
CCGCATCTGGA Run BLAST on NCBI protein sequence of TCONS_00063840-protein >TCONS_00063840-protein ID=TCONS_00063840-protein|Name=TCONS_00063840-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MVQNQLKELNHNKSFGPDEIHPRILAELSDYLSLPLAVIMNKSLVEGSLP
QDWKVAYVTPIYKNKGPQNLAGNYRPVSLTSVVCKLMESILKHLSDHNLL
SNKQYGFINNRSTVTQLLFSLDKCYESISKGHVVDSIHFDFAKAFDTVPH
RRLCKKLSAYGINGSILKWITSFLTGRTQSVKVNQSFSTTDPVVSGIPQG
SVLGPILSVLYINDLPEKVXXSVTF Run BLAST on NCBI transcript from alignment at scaffold_403:78559..79669 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063840 ID=TCONS_00063840|Name=TCONS_00063840|organism=Clytia hemisphaerica|type=transcript|length=1111bp|location=Sequence derived from alignment at scaffold_403:78559..79669 (Clytia hemisphaerica)
TCCAGATGCGGGCGAACAAACGCACAATACAATGTTTTAAATGTACTTGT
AATCATGTTTACAAATCCTCGATTGATTATGCCAAGTATcgcgttttctt
ttttgacttgCTTTGCAATGTGTTCTTCAAATGTAAGTTCTGAGTCAATG
AGGATTCCagatctttttcttcaaagacgTGTTCCAATTGGCGTCCATCT
AGGGAATATGGATGAGCATGTTTGATGTTTCCAAACTTTCCTAGCGTCAG
AACGTGACACTTTNNATGACCTTTTCAGGAAGATCATTGATGTATAGCAC
GGACAGTATTGGTCCCAGTACACTACCCTGTGGAATACCACTCACTACAG
GGTCTGTAGTCGAGAAGGACTGGTTCACTTTTACTGATTGAGTTCGACCT
GTTAGAAATGACGTTATCCATTTTAAGATTGAACCGTTGATCCCATATGC
TGATAGTTTCTTGCATAGTCGACGGTGGGGTACAGTGTCGAAAGCCTTAG
CAAAATCGAAGTGGATACTATCAACAACGTGTCCTTTAGAGATGCTCTCA
TAACATTTATCCAGAGAGAACAAAAGCTGTGTCACGGTTGAGCGGTTGTT
AATGAAGCCATATTGTTTGTTCGATAAAAGATTATGATCAGAAAGGTGCT
TCAGTATTGATTCCATTAATTTGCACACTACCGATGTCAAACTAACAGGT
CGATAATTGCCTGCCAAATTCTGAGGTCCCTTGTTTTTGTAGATAGGTGT
GACATATGCCACCTTCCAATCTTGTGGTAATGAGCCTTCAACTAAAGATT
TGTTCATGATTACAGCCAAGGGTAAAGACAGATAGTCAGATAATTCCGCT
AGTATCCTAGGGTGTATTTCGTCTGGACCGAATGACTTATTATGGTTGAG
CTCTTTCAATTGATTCTGTACCATCTCCTCAGAGATATGAATATCTccga
tggatggatggatgaaTCAGTTCTCTTTTCAAATGCAGGAAGCTCACCTA
CTGCTTCTTTTGTGAATACACTGCAGAACTGTCGTTGAAGTATATTAGCT
TTTTCGTGATCTTCATGCTTTAACGAGGTTTTGACATTTGGTGATTCAAG
TAGTGATGAAA Coding sequence (CDS) from alignment at scaffold_403:78559..79669 >TCONS_00063840 ID=TCONS_00063840|Name=TCONS_00063840|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_403:78559..79669 (Clytia hemisphaerica)
TCAGAACGTGACACTTTNNATGACCTTTTCAGGAAGATCATTGATGTATA
GCACGGACAGTATTGGTCCCAGTACACTACCCTGTGGAATACCACTCACT
ACAGGGTCTGTAGTCGAGAAGGACTGGTTCACTTTTACTGATTGAGTTCG
ACCTGTTAGAAATGACGTTATCCATTTTAAGATTGAACCGTTGATCCCAT
ATGCTGATAGTTTCTTGCATAGTCGACGGTGGGGTACAGTGTCGAAAGCC
TTAGCAAAATCGAAGTGGATACTATCAACAACGTGTCCTTTAGAGATGCT
CTCATAACATTTATCCAGAGAGAACAAAAGCTGTGTCACGGTTGAGCGGT
TGTTAATGAAGCCATATTGTTTGTTCGATAAAAGATTATGATCAGAAAGG
TGCTTCAGTATTGATTCCATTAATTTGCACACTACCGATGTCAAACTAAC
AGGTCGATAATTGCCTGCCAAATTCTGAGGTCCCTTGTTTTTGTAGATAG
GTGTGACATATGCCACCTTCCAATCTTGTGGTAATGAGCCTTCAACTAAA
GATTTGTTCATGATTACAGCCAAGGGTAAAGACAGATAGTCAGATAATTC
CGCTAGTATCCTAGGGTGTATTTCGTCTGGACCGAATGACTTATTATGGT
TGAGCTCTTTCAATTGATTCTGTACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063840-exon-scaffold_403-1491911889:78559..79669 | TCONS_00063840-exon-scaffold_403-1491911889:78559..79669 | Clytia hemisphaerica | exon |
| TCONS_00063840-exon-scaffold_403-1510915933:78559..79669 | TCONS_00063840-exon-scaffold_403-1510915933:78559..79669 | Clytia hemisphaerica | exon |
| TCONS_00063840-exon-scaffold_403-1575043694:78559..79669 | TCONS_00063840-exon-scaffold_403-1575043694:78559..79669 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_403 | supercontig | scaffold_403:78559..79669 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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