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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063863 ID=TCONS_00063863|Name=TCONS_00063863|organism=Clytia hemisphaerica|type=transcript|length=2375bpRun BLAST on NCBI protein sequence of TCONS_00063863-protein >TCONS_00063863-protein ID=TCONS_00063863-protein|Name=TCONS_00063863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp MVQTGPFFIQDDRKEKKKKKKEKKEKKKKHKKKSKKHKHKSSKHSDSSSERun BLAST on NCBI transcript from alignment at scaffold_404:182709..215476+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063863 ID=TCONS_00063863|Name=TCONS_00063863|organism=Clytia hemisphaerica|type=transcript|length=32768bp|location=Sequence derived from alignment at scaffold_404:182709..215476+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_404:182709..215476+ >TCONS_00063863 ID=TCONS_00063863|Name=TCONS_00063863|organism=Clytia hemisphaerica|type=CDS|length=31875bp|location=Sequence derived from alignment at scaffold_404:182709..215476+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063863 vs. Swiss-Prot (Human)
Match: C19L2 (CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE=1 SV=4) HSP 1 Score: 262.307 bits (669), Expect = 1.532e-74 Identity = 134/309 (43.37%), Postives = 205/309 (66.34%), Query Frame = 1
Query: 1444 LSEKEKNEISAKILRAELMGNDELAEELKGQLESGHRKVLIKSSSGNHRNTSSDDERXXXXXXDHEVILTRTDKHGNLFPVQLQTDTDELNXXXXXXXXIISTHDADGKRTKYFEDDDNMDLKALMQQERMTTSDDQTAQMARLASKHLGKTQGDDYTLDDMFVTASATKGSVRNEDKRTKEKAVKEHKQRELQLASCRFCFENPKIAKHLIIAIGRKTYLALPIHKSLTEGHCLILPLHHVIGQSYMDEDVLQEIKLFKDSLVKMFSKQDQDVVFMETCKNLRHQNHCVIECVPIEKELGDLCPIYFK 2370
LS EKN++ AKI++AE+MGN ELAE+LK QLE ++ + ++D+ EVIL RTD+ G ++PV + E ++ +RK++++STH+ + +R +YF DDDN+ L L++ E+M T+++Q R+ASK +GKT GD YTLDDMFV+ +A + + E++ ++KA+ EH+ Q+ C +CF++ + KHLI+AIG K YL LP +SLTEGHCLI+PL H + +DED+ +EI++F+ SLVKMF + D +F+ET +++ Q H V EC+P+ KE+GD+ PIYFK
Sbjct: 488 LSVDEKNKLGAKIIKAEMMGNMELAEQLKVQLEKANKFKETITQIPKKSGVENEDQ--------QEVILVRTDQSGRVWPVNTPGKSLE-SQGGRRKRQMVSTHE-ERERVRYFHDDDNLSLNDLVKNEKMGTAENQNKLFMRMASKFMGKTDGDYYTLDDMFVSKAAERERLGEEEENQRKKAIAEHRSLAAQMEKCLYCFDSSQFPKHLIVAIGVKVYLCLPNVRSLTEGHCLIVPLQHHRAATLLDEDIWEEIQMFRKSLVKMFEDKGLDCIFLETNMSMKKQYHMVYECIPLPKEVGDMAPIYFK 786 HSP 2 Score: 86.6557 bits (213), Expect = 2.308e-17 Identity = 54/138 (39.13%), Postives = 88/138 (63.77%), Query Frame = 1
Query: 757 KETPNVVERDDWMLSSSLLDVASKATYSREHGXXXXXXXXXXXXXXXXXATIQASRELNPYWKNGGTGLPSDSETRTQAEVTQNHKVGDGGKSWLQKSYDRAVKQAKEQGVPVEDIISKRYGSMEKFNALLKAAERTT 1170
K+ +++RD+WM + + V + ++ S + K RK E+++ + +++ + RELNPYWK+GGTGLP E + + +T+ V DGG SWL+KSY R +QA++Q EDI+++RYGSME F + L+ AE+
Sbjct: 143 KDDTQIIKRDEWM-TVDFMSVKTVSSSSLKAEKETMRKIEQEKNQALEQSKL-MERELNPYWKDGGTGLPP--EDCSVSSITKVSVVEDGGLSWLRKSYLRMKEQAEKQSRNFEDIVAERYGSMEIFQSKLEDAEKAA 276 The following BLAST results are available for this feature:
BLAST of TCONS_00063863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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