|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063870 ID=TCONS_00063870|Name=TCONS_00063870|organism=Clytia hemisphaerica|type=transcript|length=2380bpRun BLAST on NCBI transcript from alignment at scaffold_404:223549..246533+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063870 ID=TCONS_00063870|Name=TCONS_00063870|organism=Clytia hemisphaerica|type=transcript|length=22985bp|location=Sequence derived from alignment at scaffold_404:223549..246533+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00063870 vs. Swiss-Prot (Human)
Match: ETFD (Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Homo sapiens GN=ETFDH PE=1 SV=2) HSP 1 Score: 838.565 bits (2165), Expect = 0.000e+0 Identity = 395/577 (68.46%), Postives = 468/577 (81.11%), Query Frame = 3
Query: 228 QITTHYTIKSRENDERWADVDMDRFADETDVLIVGGGPAGMTTAIKLKQLAAEQDIDLKVTVVEKASEIGGHTLSGACIETKALDELFSDWKERDAPLHTEVTGDKMYYLTESKGINIPVFKGLPMYNHGNYLVRLGNFVQWLGEQAEQMDVEIYPGIAASEVLYHEDGSVKGIATADVGIARDGSPKDTFERGMELHAKVTVFAEGCHGHLAKQIFNKFNLRENSCQQTYGIGIKELWEIDPDKHQPGLVIHTAGWPLPSDTYGGSFLYHLDEG-PLVSAGFVVGLDYKNPYLSPFQEFQRWKTHPSIRETFEGGTRIAYGARALNEGGYQSLPKLTFPGGCVIGCSAGFMNVPKIKGTHGAMKSGLLAAESIFEALSDEVNQEKESGIEPSTYGQRFKDSWLHKELYSARNIRPSFETPLHLWGTMLYTGLFYWLGGGREPWTFKHDGIDAEKLKPAAECTPIEYPKPDGKITFDLLSSVALSGTNHDHDQPAHLTLKNDDVPVERNLGVFDGPEARFCPAGVYEYIDDEATGGRKLQINAQNCVHCKTCDIKCPSQNINWVVPESGGGPAYSGM 1955
+ITTHYTI R+ D+RW V+M+RFA+E DV+IVG GPAG++ A++LKQLA + D++V +VEKA++IG HTLSGAC++ A ELF DWKE+ APL+T VT D+ LTE I +P+ GLPM NHGNY+VRLG+ V W+GEQAE + VE+YPG AA+EVL+H+DGSVKGIAT DVGI +DG+PK TFERG+ELHAKVT+FAEGCHGHLAKQ++ KF+LR N QTYGIG+KELW ID +PG V HT GWPL TYGGSFLYHL+EG PLV+ G VVGLDY+NPYLSPF+EFQRWK HPSIR T EGG RIAYGARALNEGG+QS+PKLTFPGG +IGCS GFMNVPKIKGTH AMKSG+LAAESIF L+ E Q K G+ + Y K+SW+ KELYS RNIRPS L ++G M+YTG+FYW+ G EPWT KH G D E+LKPA +CTPIEYPKPDG+I+FDLLSSVALSGTNH+HDQPAHLTL++D +PV RNL ++DGPE RFCPAGVYE++ E G +LQINAQNCVHCKTCDIK PSQNINWVVPE GGGPAY+GM
Sbjct: 41 RITTHYTIYPRDKDKRWEGVNMERFAEEADVVIVGAGPAGLSAAVRLKQLAVAHEKDIRVCLVEKAAQIGAHTLSGACLDPGAFKELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYIVRLGHLVSWMGEQAEALGVEVYPGYAAAEVLFHDDGSVKGIATNDVGIQKDGAPKATFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGIGLKELWVIDEKNWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLVALGLVVGLDYQNPYLSPFREFQRWKHHPSIRPTLEGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGILAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHGVLGVYGGMIYTGIFYWILRGMEPWTLKHKGSDFERLKPAKDCTPIEYPKPDGQISFDLLSSVALSGTNHEHDQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVVPEGGGGPAYNGM 617 The following BLAST results are available for this feature:
BLAST of TCONS_00063870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.