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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063895 ID=TCONS_00063895|Name=TCONS_00063895|organism=Clytia hemisphaerica|type=transcript|length=817bp
ctATTCTCAAGACTCTGTGGAAAACCAGTCCTTTCTACCCTGGAAAACAA
ACTTTTCAAAGAGGATTGTCATAACAAGTTAGCAGAAATATCTGGTCCTA
TATCAAGTGGAAAGACAGAAATCCTTTTGCATATCATACTGAATACTTTG
CTACCTAAAACATTCAAAGATACCAGTGTCAACGGCATAGAGGGCAAGTG
ATAGATGATTTATACTCCTACCATTGGATTGACAGCCTGGAAGCTGGACA
TAACAAATTCTCATCGAATTACTTAAAAAGTGTTGTAGAAATCTTGAAAC
AATTTACAAGAGAATATGATATCAATGTTGTGTTTACAAGGTCAGATATT
TTACCATCTATTGTCCTGAATAATGTGGCAATAAGCAAATACACCATTCA
AATTAaagatcaaaaacaaaacttaaatatTATTTCAAAGAAGACTGGTA
ATGGATCATCATGTTTTCATTATAAGCTTGGCTATAAAGGAACTACATTT
TTATGAGTGTTGAAGAATCGATTGAACTTGAGTTGGATGGAAGTTTATTC
TTGTCTTTGcttgttgtttccaatatttttggtaaagGTTTGTTCTAATT
cgtcttattttttcaaaagttattatTTTGACACTGACTTACTATTTAGC
TTTGACCCAACCTCTAAACTAGCTGAAAATCATAGCTTTTAACACTTACa
aatctttttaaagaattgAAACAAAGATTGTTTGCTCAATACAGGTGTAA
ATAAAAAGCCATAAAATTTTTTATGGCTTTTGTaacaaatattaagaatt
tcattttttgataaaGA Run BLAST on NCBI transcript from alignment at scaffold_404:644620..645674+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063895 ID=TCONS_00063895|Name=TCONS_00063895|organism=Clytia hemisphaerica|type=transcript|length=1055bp|location=Sequence derived from alignment at scaffold_404:644620..645674+ (Clytia hemisphaerica)
ctATTCTCAAGACTCTGTGGAAAACCAGTCCTTTCTACCCTGGAAAACAA
ACTTTTCAAAGAGGATTGTCATAACAAGTTAGCAGAAATATCTGGTCCTA
TATCAAGTGGAAAGACAGAAATCCTTTTGCATATCATACTGAATACTTTG
CTACCTAAAACATTCAAAGATACCAGTGTCAACGGCATAGAGGGCAAGGT
AATTTTTATTGATACATCTTATAAGTTTTCTGTTTTACGACTTGTCACAT
TGTTGGAGCAACGTTTATTGAATAAACTTGATCATTCAAATGTCGATTCA
CTGATTTCTGCACAGTTTGTGAAGGACTGCTTGAGCagattttataaaat
ttcttgCTCCTCAAGTAAAGAACTCTTTGTTAGTTTGCTGGCGTTGGAAC
CGTTTTTACAAGCAACATCAGATGTTTACCTTTTAGTGATAGATGATTTA
TACTCCTACCATTGGATTGACAGCCTGGAAGCTGGACATAACAAATTCTC
ATCGAATTACTTAAAAAGTGTTGTAGAAATCTTGAAACAATTTACAAGAG
AATATGATATCAATGTTGTGTTTACAAGGTCAGATATTTTACCATCTATT
GTCCTGAATAATGTGGCAATAAGCAAATACACCATTCAAATTAaagatca
aaaacaaaacttaaatatTATTTCAAAGAAGACTGGTAATGGATCATCAT
GTTTTCATTATAAGCTTGGCTATAAAGGAACTACATTTTTATGAGTGTTG
AAGAATCGATTGAACTTGAGTTGGATGGAAGTTTATTCTTGTCTTTGctt
gttgtttccaatatttttggtaaagGTTTGTTCTAATTcgtcttattttt
tcaaaagttattatTTTGACACTGACTTACTATTTAGCTTTGACCCAACC
TCTAAACTAGCTGAAAATCATAGCTTTTAACACTTACaaatctttttaaa
gaattgAAACAAAGATTGTTTGCTCAATACAGGTGTAAATAAAAAGCCAT
AAAATTTTTTATGGCTTTTGTaacaaatattaagaatttcattttttgat
aaaGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063895-exon-scaffold_404-1491911889:644620..644817 | TCONS_00063895-exon-scaffold_404-1491911889:644620..644817 | Clytia hemisphaerica | exon |
| TCONS_00063895-exon-scaffold_404-1510915933:644620..644817 | TCONS_00063895-exon-scaffold_404-1510915933:644620..644817 | Clytia hemisphaerica | exon |
| TCONS_00063895-exon-scaffold_404-1575043694:644620..644817 | TCONS_00063895-exon-scaffold_404-1575043694:644620..644817 | Clytia hemisphaerica | exon |
| TCONS_00063895-exon-scaffold_404-1491911889:645056..645674 | TCONS_00063895-exon-scaffold_404-1491911889:645056..645674 | Clytia hemisphaerica | exon |
| TCONS_00063895-exon-scaffold_404-1510915933:645056..645674 | TCONS_00063895-exon-scaffold_404-1510915933:645056..645674 | Clytia hemisphaerica | exon |
| TCONS_00063895-exon-scaffold_404-1575043694:645056..645674 | TCONS_00063895-exon-scaffold_404-1575043694:645056..645674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:644620..645674 + |
Blast
The following BLAST results are available for this feature:
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