TCONS_00063909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063909
Unique NameTCONS_00063909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063909 ID=TCONS_00063909|Name=TCONS_00063909|organism=Clytia hemisphaerica|type=transcript|length=1665bp
TGACTATTCTCTCTCACTTTCCGACGGTTCGAAACTCTCTTATAGTAAAG
AACTGGGGTGTCTCGAAGATTTTTTCTCCGCATTCGGGAGTTTATCGGGA
AACAGGATAAGTAGTGAAAATGCTCTTCTGGTTGTTGTTCTATTCTCCTT
CTGGCGATAACAACTTTTATCGTGTCTCTTCGACATGAAAGTGTTCCGAC
CATTTCTTTAATGTTAAGACCTATTTTATGGACATTGTGAAATAGAATTC
AATTTTCCCTCTATAAGACGCCCTTAAAAGAACTTCCAGATAAACTGTTT
GCGCTACTATCGAAAACTATTAAAAGAGATCTCTAGTCGCGGTGAGTCTC
TAATAGGAAgcaattgaaaagaaaaagtagaGATCAAATAGAGAAGAAGA
TGTTGTAAAGAGTAGCTGTAAAATCGATTAAGACTTTACAACTAACTTCC
TTCAGAAAAAGTTGAATCCCAAAGTTAGTTAGCCTCGTAACAATATTTTT
GGTGATTTTCGAGAAGAAAATGCAATCTTTTCGCTCCAAGATTTCTTTTT
ATCATCTCGTTTTCCGATTGGTCCATTTTTGTAGGTCGTGGATGGAGCGC
ACGTCGAAACGCACGCAAGCGTACATGAACGATGTCACGGAGACGGTGTC
ACGTAAGCACGTCCACGATGAGTTATCAAGCGAAATTGAATCACGCCGTC
AATACGTGACGGAGCTGCAGCTTAAAAAACAAAAcgattttcattgtttt
accAAAGACAATTTAGACGTGTTAACCAACTGTTGGTGTAGTTTTGAACG
TAAGTGGCATGCTTTACAGTCACAGGTCAGAATGTTGGGTGATTTAGTGG
AAAACACGGATGGGTTGAACCACATTCTGAATGATTTTGATGCCATTGAA
AGCTGGCTGGACgaacaagaaaagaaaatatatttggaacCTTCGAATAA
ATTGAATGATTCTTTGGACGAGTCGGGTTTtgaaaatggttttcttgaga
ATGCACTTTCAAATCAAAACGAACTTGAAGAATTTTTGAAGATACAAGAC
GAGAAAGTTCGATCAACTTGCGATAAAATAGATTCTTTTAAAATGGTGAA
AACTGGTGACAATGATTCTACTGATATGACTTGTTCTAGTGAGGTACAGA
TCATTGAAAAAGCTTTGCAGTTAGAAAACCAAGTTGAAGACACACCTTCA
AATGGGGGATTGGATGATTCAGAACCAAGTAACCATAGTAACGAAATAAA
CAATAACGAAACAACCGGTACCGATTCACTTCGAGATATTCCACAGACTT
CTCCTTCGAAACCAGATAAAGTTCTTATcggacttttgaaaaaatcgaGA
ACTCCGAGTAACTCAAAGAAACGTGTTGTGTTTAGTACAACTCATGAATT
CTCAGATTGTGTAACCATTCAACAATTCTCTAAACTCAATGACGAGTATG
AACAAGAACAACATTATTTCTATgaagatgacgatgatgattATGATAAT
TATGCAGATGGTAATTATGCTAATTATGTAGACGATGACCATTGGGAGGA
CGATGGTATTGTTTTCAGTGAAGAGGCGTTGTCTCCGTCATATTATCCCG
AACCGCCCGAAGAATTCCTTCATTTATCCGATTCGGATGAGGATGAGGAC
GATGGTGAGTCATTC
Run BLAST on NCBI

transcript from alignment at scaffold_404:783533..785197+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063909 ID=TCONS_00063909|Name=TCONS_00063909|organism=Clytia hemisphaerica|type=transcript|length=1665bp|location=Sequence derived from alignment at scaffold_404:783533..785197+ (Clytia hemisphaerica)
TGACTATTCTCTCTCACTTTCCGACGGTTCGAAACTCTCTTATAGTAAAG
AACTGGGGTGTCTCGAAGATTTTTTCTCCGCATTCGGGAGTTTATCGGGA
AACAGGATAAGTAGTGAAAATGCTCTTCTGGTTGTTGTTCTATTCTCCTT
CTGGCGATAACAACTTTTATCGTGTCTCTTCGACATGAAAGTGTTCCGAC
CATTTCTTTAATGTTAAGACCTATTTTATGGACATTGTGAAATAGAATTC
AATTTTCCCTCTATAAGACGCCCTTAAAAGAACTTCCAGATAAACTGTTT
GCGCTACTATCGAAAACTATTAAAAGAGATCTCTAGTCGCGGTGAGTCTC
TAATAGGAAgcaattgaaaagaaaaagtagaGATCAAATAGAGAAGAAGA
TGTTGTAAAGAGTAGCTGTAAAATCGATTAAGACTTTACAACTAACTTCC
TTCAGAAAAAGTTGAATCCCAAAGTTAGTTAGCCTCGTAACAATATTTTT
GGTGATTTTCGAGAAGAAAATGCAATCTTTTCGCTCCAAGATTTCTTTTT
ATCATCTCGTTTTCCGATTGGTCCATTTTTGTAGGTCGTGGATGGAGCGC
ACGTCGAAACGCACGCAAGCGTACATGAACGATGTCACGGAGACGGTGTC
ACGTAAGCACGTCCACGATGAGTTATCAAGCGAAATTGAATCACGCCGTC
AATACGTGACGGAGCTGCAGCTTAAAAAACAAAAcgattttcattgtttt
accAAAGACAATTTAGACGTGTTAACCAACTGTTGGTGTAGTTTTGAACG
TAAGTGGCATGCTTTACAGTCACAGGTCAGAATGTTGGGTGATTTAGTGG
AAAACACGGATGGGTTGAACCACATTCTGAATGATTTTGATGCCATTGAA
AGCTGGCTGGACgaacaagaaaagaaaatatatttggaacCTTCGAATAA
ATTGAATGATTCTTTGGACGAGTCGGGTTTtgaaaatggttttcttgaga
ATGCACTTTCAAATCAAAACGAACTTGAAGAATTTTTGAAGATACAAGAC
GAGAAAGTTCGATCAACTTGCGATAAAATAGATTCTTTTAAAATGGTGAA
AACTGGTGACAATGATTCTACTGATATGACTTGTTCTAGTGAGGTACAGA
TCATTGAAAAAGCTTTGCAGTTAGAAAACCAAGTTGAAGACACACCTTCA
AATGGGGGATTGGATGATTCAGAACCAAGTAACCATAGTAACGAAATAAA
CAATAACGAAACAACCGGTACCGATTCACTTCGAGATATTCCACAGACTT
CTCCTTCGAAACCAGATAAAGTTCTTATcggacttttgaaaaaatcgaGA
ACTCCGAGTAACTCAAAGAAACGTGTTGTGTTTAGTACAACTCATGAATT
CTCAGATTGTGTAACCATTCAACAATTCTCTAAACTCAATGACGAGTATG
AACAAGAACAACATTATTTCTATgaagatgacgatgatgattATGATAAT
TATGCAGATGGTAATTATGCTAATTATGTAGACGATGACCATTGGGAGGA
CGATGGTATTGTTTTCAGTGAAGAGGCGTTGTCTCCGTCATATTATCCCG
AACCGCCCGAAGAATTCCTTCATTTATCCGATTCGGATGAGGATGAGGAC
GATGGTGAGTCATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040058XLOC_040058Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063909-exon-scaffold_404-1491911889:783533..785197TCONS_00063909-exon-scaffold_404-1491911889:783533..785197Clytia hemisphaericaexon
TCONS_00063909-exon-scaffold_404-1510915933:783533..785197TCONS_00063909-exon-scaffold_404-1510915933:783533..785197Clytia hemisphaericaexon
TCONS_00063909-exon-scaffold_404-1575043694:783533..785197TCONS_00063909-exon-scaffold_404-1575043694:783533..785197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:783533..785197 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.432568	0.879339	0.128865	0	0.50427	0.532074	0	4.33476	0	0.285977	0.0894239	0	0.180256	0.122258	0	0	0.185159	0.5629	0	0	0.861287	0	0	0.197285	13.579	15.0717	0.483045	0.186407
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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