TCONS_00063921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063921
Unique NameTCONS_00063921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063921 ID=TCONS_00063921|Name=TCONS_00063921|organism=Clytia hemisphaerica|type=transcript|length=1757bp
GTGCTTGTGTAAAGTTTCCCGTTTATCTTCCAGCTCAAACTGTTTTACGT
TATTCACAATAACAGCGGTCGACATCAGATTCGGTAACCACTGACTTAAC
CGGTAATATTTTTACGTTTTAATGACTTAGGACCTCTCCTAGGTTACAAC
CCAAAAGCTTTCAAGTCGTATTTGATAGTTAAGTCGAGGAGAAGCTCGAA
GAAGCAAAGGTGCTATTCAAAGACACAGGAATCAACATCACGGTTGGTGG
ACACAAATATCTTGGTGGTTTCATTGGTCAAGAGGGTGGCCAACAGGAAT
ATGTGAAGAAACTGATAGGAAAATGGCAAGCTGAGCTCCAAACACTGAGT
GATATCGCAAGATCAGAACCACACCTCGCCTACTGTGCATTCGTTGGTGG
GTATGTTAGCAAGTTCACCTACTACCTACGTGTGATATCCGGAATTGAGG
AATATCTGAAGCCCCTCGATGAAGTTATTGACAAACATTTCATCCCTTCA
ATTACTGAAAACCATCAATGCAGCGCCGAAGAAAGACTACTCTTGTCACT
ACCGTATGGGAGGATTGGCCATACCCATCTTATCATCTCTGGCGAAGGAA
GAATTCCAAAACTCCAGAGAACTTACAATGAAGTTCTCCCAAGACATAAT
CGAACAGAAGCCAGTGTACGAAGTTGACAACAGGGCAGCAAAGTCTGAGA
TCAAGAGAAAACGGAAAGAAGGAAGAACAATCATCCTCGAAAATCTCCGC
AGAGACATGACACATCAAAAGCTGAAAGCGAACGATCTTGCTAAAGCAAA
AGGTACATCCAATTGGTTGACCACTGTCCCcctgaaatctgaaaatttca
acctaTCAAAAAGAGAGTTCTTCGACGCAATTGCCGTCCGATACAGATGG
AACATGAAGCACCTACCATCGACATGTGCGTGTGGCAAGTCGTTCTCTGT
CGAGCATGCACTTTCCTGCCCTAAAGGAGGGTTCATCTACCAGCGGCACA
ACACTTTCAGGGATACAATTGCTCAAATGTTGAATCAAGTGACACATGAT
GTTGCTATCGAACCAATGTTGGAGACGATCACTGGCGAACGTTTAAACAA
AGGTGCGATCACGACTGACAACGCGAGAGCTGACATCAGTGCTGGAGGTT
TTTGGGTTCGTGGACAACGAGCATTTTTTGATGTAAAGGTATTCAACGCC
TATGCTCTGAGATACACAGCCCAAAGTTTCAAAAGCGCTTTTGCGTCAAA
CGAacgggaaaaaaagagaaactacAACGAACGAATTATCAAAGTTGATC
ATGGATCATTCACTCCATTAATATTTTCCATGAATGGTGGAATGGGTGTA
GAGGCTGAGCACTTCTTTGGAGCGTTAGCTAATCTACTAGCTGATAAGAC
TGATTCTCACGCGTCTCAAACTAATAATTGGATTAGAACAAAAATTTCGT
TTGCTTTAACGAGATCAGTGGTAACATGTATTCGCGGTACACGAACACTA
AAACCAAACCTTAGGTTTGATGAAATtgacaatattttgaaatcttagct
tttcatagattttagTACTTCTCATAGTTctggttttaatattttcaccg
TATTTTCCGTAGCTTCTGCTTATGATTTTGGGGCTGGCATGACCCGCTAG
GTTGTGCTATTTCGACAGGATTGCGATTCAGTTTACACTATATTTGTTTG
TGTAGTGatctcaattttttatttaactttaaaTTCTATTTCCTAGCTCT
ACGTAAT
Run BLAST on NCBI

protein sequence of TCONS_00063921-protein

>TCONS_00063921-protein ID=TCONS_00063921-protein|Name=TCONS_00063921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MKLLTNISSLQLLKTINAAPKKDYSCHYRMGGLAIPILSSLAKEEFQNSR
ELTMKFSQDIIEQKPVYEVDNRAAKSEIKRKRKEGRTIILENLRRDMTHQ
KLKANDLAKAKGTSNWLTTVPLKSENFNLSKREFFDAIAVRYRWNMKHLP
STCACGKSFSVEHALSCPKGGFIYQRHNTFRDTIAQMLNQVTHDVAIEPM
LETITGERLNKGAITTDNARADISAGGFWVRGQRAFFDVKVFNAYALRYT
AQSFKSAFASNEREKKRNYNERIIKVDHGSFTPLIFSMNGGMGVEAEHFF
GALANLLADKTDSHASQTNNWIRTKISFALTRSVVTCIRGTRTLKPNLRF
DEIDNILKS
Run BLAST on NCBI

transcript from alignment at scaffold_404:69719..71581-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063921 ID=TCONS_00063921|Name=TCONS_00063921|organism=Clytia hemisphaerica|type=transcript|length=1863bp|location=Sequence derived from alignment at scaffold_404:69719..71581- (Clytia hemisphaerica)
GTGCTTGTGTAAAGTTTCCCGTTTATCTTCCAGCTCAAACTGTTTTACGT
TATTCACAATAACAGCGGTCGACATCAGATTCGGTAACCACTGACTTAAC
CGGTAATATTTTTACGTTTTAATGACTTAGGACCTCTCCTAGGTTACAAC
CCAAAAGCTTTCAAGTCGTATTTGATAGTTAAGTCGAGGAGAAGCTCGAA
GAAGCAAAGGTGCTATTCAAAGACACAGGAATCAACATCACGGTTGGTGG
ACACAAATATCTTGGTGGTTTCATTGGTCAAGAGGGTGGCCAACAGGAAT
ATGTGAAGAAACTGATAGGAAAATGGCAAGCTGAGCTCCAAACACTGAGT
GATATCGCAAGATCAGAACCACACCTCGCCTACTGTGCATTCGTTGGTGG
GTATGTTAGCAAGTTCACCTACTACCTACGTGTGATATCCGGAATTGAGG
AATATCTGAAGCCCCTCGATGAAGTTATTGACAAACATTTCATCCCTTCA
ATTACTGAAAACCATCAATGCAGCGCCGAAGAAAGACTACTCTTGTCACT
ACCGTATGGGAGGATTGGCCATACCCATCTTATCATCTCTGGCGAAGGAA
GAATTCCAAAACTCCAGAGAACTTACAATGAAGTTCTCCCAAGACATAAT
CGAACAGAAGCCAGTGTACGAAGTTGACAACAGGGCAGCAAAGTCTGAGA
TCAAGAGAAAACGGAAAGAAGGAAGAACAATCATCCTCGAAAATCTCCGC
AGAGACATGACACATCAAAAGCTGAAAGCGAACGATCTTGCTAAAGCAAA
AGGTGNTCAAGAGAAAACGGAAAGAAGGAAGAACAATCATCCTCGAAAAT
CTCCGCAGAGACATGACACATCAAAAGCTGAAAGCGAACGATCTTGCTCA
AGCAAAAGGTACATCCAATTGGTTGACCACTGTCCCCCTGAAATCTGAAA
ATTTCAACCTATCAAAAAGAGAGTTCTTCGACGCAATTGCCGTCCGATAC
AGATGGAACATGAAGCACCTACCATCGACATGTGCGTGTGGCAAGTCGTT
CTCTGTCGAGCATGCACTTTCCTGCCCTAAAGGAGGGTTCATCTACCAGC
GGCACAACACTTTCAGGGATACAATTGCTCAAATGTTGAATCAAGTGACA
CATGATGTTGCTATCGAACCAATGTTGGAGACGATCACTGGCGAACGTTT
AAACAAAGGTGCGATCACGACTGACAACGCGAGAGCTGACATCAGTGCTG
GAGGTTTTTGGGTTCGTGGACAACGAGCATTTTTTGATGTAAAGGTATTC
AACGCCTATGCTCTGAGATACACAGCCCAAAGTTTCAAAAGCGCTTTTGC
GTCAAACGAACGGGAAAAAAAGAGAAACTACAACGAACGAATTATCAAAG
TTGATCATGGATCATTCACTCCATTAATATTTTCCATGAATGGTGGAATG
GGTGTAGAGGCTGAGCACTTCTTTGGAGCGTTAGCTAATCTACTAGCTGA
TAAGACTGATTCTCACGCGTCTCAAACTAATAATTGGATTAGAACAAAAA
TTTCGTTTGCTTTAACGAGATCAGTGGTAACATGTATTCGCGGTACACGA
ACACTAAAACCAAACCTTAGGTTTGATGAAATTGACAATATTTTGAAATC
TTAGCTTTTCATAGATTTTAGTACTTCTCATAGTTCTGGTTTTAATATTT
TCACCGTATTTTCCGTAGCTTCTGCTTATGATTTTGGGGCTGGCATGACC
CGCTAGGTTGTGCTATTTCGACAGGATTGCGATTCAGTTTACACTATATT
TGTTTGTGTAGTGATCTCAATTTTTTATTTAACTTTAAATTCTATTTCCT
AGCTCTACGTAAT

Coding sequence (CDS) from alignment at scaffold_404:69719..71581-

>TCONS_00063921 ID=TCONS_00063921|Name=TCONS_00063921|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_404:69719..71581- (Clytia hemisphaerica)
GTACATCCAATTGGTTGACCACTGTCCCCCTGAAATCTGAAAATTTCAAC
CTATCAAAAAGAGAGTTCTTCGACGCAATTGCCGTCCGATACAGATGGAA
CATGAAGCACCTACCATCGACATGTGCGTGTGGCAAGTCGTTCTCTGTCG
AGCATGCACTTTCCTGCCCTAAAGGAGGGTTCATCTACCAGCGGCACAAC
ACTTTCAGGGATACAATTGCTCAAATGTTGAATCAAGTGACACATGATGT
TGCTATCGAACCAATGTTGGAGACGATCACTGGCGAACGTTTAAACAAAG
GTGCGATCACGACTGACAACGCGAGAGCTGACATCAGTGCTGGAGGTTTT
TGGGTTCGTGGACAACGAGCATTTTTTGATGTAAAGGTATTCAACGCCTA
TGCTCTGAGATACACAGCCCAAAGTTTCAAAAGCGCTTTTGCGTCAAACG
AACGGGAAAAAAAGAGAAACTACAACGAACGAATTATCAAAGTTGATCAT
GGATCATTCACTCCATTAATATTTTCCATGAATGGTGGAATGGGTGTAGA
GGCTGAGCACTTCTTTGGAGCGTTAGCTAATCTACTAGCTGATAAGACTG
ATTCTCACGCGTCTCAAACTAATAATTGGATTAGAACAAAAATTTCGTTT
GCTTTAACGAGATCAGTGGTAACATGTATTCGCGGTACACGAACACTAAA
ACCAAACCTTAGGTTTGATGAAATTGACAATATTTTGAAATCTTAGATGA
AGTTATTGACAAACATTTCATCCCTTCAATTACTGAAAACCATCAATGCA
GCGCCGAAGAAAGACTACTCTTGTCACTACCGTATGGGAGGATTGGCCAT
ACCCATCTTATCATCTCTGGCGAAGGAAGAATTCCAAAACTCCAGAGAAC
TTACAATGAAGTTCTCCCAAGACATAATCGAACAGAAGCCAGTGTACGAA
GTTGACAACAGGGCAGCAAAGTCTGAGATCAAGAGAAAACGGAAAGAAGG
AAGAACAATCATCCTCGAAAATCTCCGCAGAGACATGACACATCAAAAGC
TGAAAGCGAACGATCTTGCTAAAGCAAAAGGTACATCCAATTGGTTGACC
ACTGTCCCCCTGAAATCTGAAAATTTCAACCTATCAAAAAGAGAGTTCTT
CGACGCAATTGCCGTCCGATACAGATGGAACATGAAGCACCTACCATCGA
CATGTGCGTGTGGCAAGTCGTTCTCTGTCGAGCATGCACTTTCCTGCCCT
AAAGGAGGGTTCATCTACCAGCGGCACAACACTTTCAGGGATACAATTGC
TCAAATGTTGAATCAAGTGACACATGATGTTGCTATCGAACCAATGTTGG
AGACGATCACTGGCGAACGTTTAAACAAAGGTGCGATCACGACTGACAAC
GCGAGAGCTGACATCAGTGCTGGAGGTTTTTGGGTTCGTGGACAACGAGC
ATTTTTTGATGTAAAGGTATTCAACGCCTATGCTCTGAGATACACAGCCC
AAAGTTTCAAAAGCGCTTTTGCGTCAAACGAACGGGAAAAAAAGAGAAAC
TACAACGAACGAATTATCAAAGTTGATCATGGATCATTCACTCCATTAAT
ATTTTCCATGAATGGTGGAATGGGTGTAGAGGCTGAGCACTTCTTTGGAG
CGTTAGCTAATCTACTAGCTGATAAGACTGATTCTCACGCGTCTCAAACT
AATAATTGGATTAGAACAAAAATTTCGTTTGCTTTAACGAGATCAGTGGT
AACATGTATTCGCGGTACACGAACACTAAAACCAAACCTTAGGTTTGATG
AAATTGACAATATTTTGAAATCTTAGATGAAGTTATTGACAAACATTTCA
TCCCTTCAATTACTGAAAACCATCAATGCAGCGCCGAAGAAAGACTACTC
TTGTCACTACCGTATGGGAGGATTGGCCATACCCATCTTATCATCTCTGG
CGAAGGAAGAATTCCAAAACTCCAGAGAACTTACAATGAAGTTCTCCCAA
GACATAATCGAACAGAAGCCAGTGTACGAAGTTGACAACAGGGCAGCAAA
GTCTGAGATCAAGAGAAAACGGAAAGAAGGAAGAACAATCATCCTCGAAA
ATCTCCGCAGAGACATGACACATCAAAAGCTGAAAGCGAACGATCTTGCT
AAAGCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040064XLOC_040064Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063921-proteinTCONS_00063921-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063921-exon-scaffold_404-1575043694:70780..71581TCONS_00063921-exon-scaffold_404-1575043694:70780..71581Clytia hemisphaericaexon
TCONS_00063921-exon-scaffold_404-1575043694:69719..70673TCONS_00063921-exon-scaffold_404-1575043694:69719..70673Clytia hemisphaericaexon
TCONS_00063921-exon-scaffold_404-1510915933:70780..71581TCONS_00063921-exon-scaffold_404-1510915933:70780..71581Clytia hemisphaericaexon
TCONS_00063921-exon-scaffold_404-1510915933:69719..70673TCONS_00063921-exon-scaffold_404-1510915933:69719..70673Clytia hemisphaericaexon
TCONS_00063921-exon-scaffold_404-1491911889:70780..71581TCONS_00063921-exon-scaffold_404-1491911889:70780..71581Clytia hemisphaericaexon
TCONS_00063921-exon-scaffold_404-1491911889:69719..70673TCONS_00063921-exon-scaffold_404-1491911889:69719..70673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:69719..71581 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17985	0.886026	1.85571	2.09963	1.04151	0.991181	0.775247	1.01252	0.710077	0.805987	1.24498	1.33107	1.02846	1.46302	0.837906	1.22509	1.3645	1.31448	0.967821	0.57971	1.08164	1.13406	0.420921	0.510922	1.53489	1.14106	2.25302	1.20795	0.788568	0.534641
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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