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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063922 ID=TCONS_00063922|Name=TCONS_00063922|organism=Clytia hemisphaerica|type=transcript|length=1611bp
gctttttttgctgagtcagcactttttttcgattttaaaatcGTTATATC
TCGTTATATTCCTGAAcctatgtgcaaaatttcatttctacaccattttt
gtcccggttttggtggtttatgacctaattctacctgactaacTTTAGTA
CCCCTAAGTTGAtttaatgtcgacatccctcttctaactctgacaccctt
ctttactGTCATTTTGTATAggtttcccatttccgcactaagattccttt
gccacttttctagctGAAAAAGACCAGAGCACCAGGTAGGTGAAAAACAA
GCTTTGGAAAATAAGTTTTGTGACTtaaacacaagattttttaCCTTTAG
AAACAGACCCTTTCCAATCTCAGGACGGTTATCCTGGGAAAAATAATAGc
agaaagattccggaaaagtgaCAGTCTTTTTTACGgaaaatgggaatctt
atataCCAAACGATGGTAGAGATTGGAATAGTAGAAAGGTTGGAATGTCT
GATggacaaaagatttttcttccCTGTCCGCTTAGCAAAAAATTAACTTT
CCCTCAATCTTCTTTCTTGAAGGGAATAATTTATTAAAATGGGTAAAGGA
AAGAAAGATTCTGGACCAATCCCTGGAGATGCCACTAAAGGTGCTAAAGT
CTTCAAACAAAGATGTTCACAATGTCACACTGTAGAAAATGGTGGCAAAC
ACAAAACTGGACCAAATCTTTATGGACTTATTGGTAGAAAGACTGGCCAA
GCCGCCAACTTCAGTTATACAGATGCTAATAAAAAGAAGGGAATCACCTG
GAGCAAAGATACACTTTGGGTATACCTTGAGAACCCAGCCAAATATATTC
CTGGAACAAAAATGGTTTTCGCCggtatcaaaaagaaaaacgaacGTGCA
GatttgaTCGCCTACTTGGAGGAAACAACCACCAAATAAATGCACACTCA
ACCATTTAAATAATCAACCACCGTAGTTagtcgaaaaaaaaactttttat
ttatcaatgcctgtaaaatttttttgtgaaattttttataaCAAATCAAC
TTACTTTATCTATGACCAATACAATTTTGGAAGAGtcgtaaaaattaaaa
ttgttggatccctgtatatttttttaacatCTTCTATTTACTTTTGGCTA
TAGCCCACGATGCTCGATGGAAATAGATGATTTTTGAGTGATAAAACTAA
TTAGAATCATACAAAGTTATTAATGTATTTATGTGAATTTTATGTACAGC
ACGATTTTGTTAGGACTTGCACCTCTTGGTACTATAACAAGAAGAATGAC
TTGAGTTTTAGTTGATAAATTTAGCCCTTAAAATCACTGTTAACGGTCGG
GGATGTGGAGGTGccttataagaaacattttttattaggaatatcgatgt
tttataagaaacattttttataagaatatcaatcatttcagttagggtta
gggttggagcccgaaacaatagcataattatactaattatgctattaatg
atgtaatctttactaTACGAGATTTTTCATTGATCGCCCtcttaaagtca
aaaaaattatttttttcaagcaagagggctaaaaaggaggctcggaaaac
acgagttaaaa Run BLAST on NCBI protein sequence of TCONS_00063922-protein >TCONS_00063922-protein ID=TCONS_00063922-protein|Name=TCONS_00063922-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MGKGKKDSGPIPGDATKGAKVFKQRCSQCHTVENGGKHKTGPNLYGLIGR
KTGQAANFSYTDANKKKGITWSKDTLWVYLENPAKYIPGTKMVFAGIKKK
NERADLIAYLEETTTK Run BLAST on NCBI transcript from alignment at scaffold_404:76356..78170- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063922 ID=TCONS_00063922|Name=TCONS_00063922|organism=Clytia hemisphaerica|type=transcript|length=1815bp|location=Sequence derived from alignment at scaffold_404:76356..78170- (Clytia hemisphaerica)
GCTTTTTTTGCTGAGTCAGCACTTTTTTTCGATTTTAAAATCGTTATATC
TCGTTATATTCCTGAACCTATGTGCAAAATTTCATTTCTACACCATTTTT
GTCCCGGTTTTGGTGGTTTATGACCTAATTCTACCTGACTAACTTTAGTA
CCCCTAAGTTGATTTAATGTCGACATCCCTCTTCTAACTCTGACACCCTT
CTTTACTGTCATTTTGTATAGGTTTCCCATTTCCGCACTAAGATTCCTTT
GCCACTTTTCTAGCTGAAAAAGACCAGAGCACCAGGTAGGTGAAAAACAA
GCTTTGGAAAATAAGTTTTGTGACTTAAACACAAGATTTTTTACCTTTAG
AAACAGACCCTTTCCAATCTCAGGACGGTTATCCTGGGAAAAATAATAGC
AGAAAGATTCCGGAAAAGTGACAGTCTTTTTTACGGAAAATGGGAATCTT
ATATACCAAACGATGGTAGAGATTGGAATAGTAGAAAGGTTGGAATGTCT
GATGGACAAAAGATTTTTCTTCCCTGTCCGCTTAGCAAAAAATTAACTTT
CCCTCAATCTTCTTTCTTGAAGGGAATAATTTATTAAAATGGGTAAAGGA
AAGAAAGATTCTGGACCAATCCCTGGAGATGCCACTAAAGGTGCTAAAGT
CTTCAAACAAAGATGTTCACAATGTCACACTGTAGAAAATGGTGGCAAAC
ACAAAACTGGACCAAATCTTTATGGACTTATTGGTAGAAAGACTGGCCAA
GCCGCCAACTTCAGTTATACAGATGCTAATAAAAAGAAGGGAATCACCTG
GAGCAAAGATACACTTTGGGTATACCTTGAGAACCCAGCCAAATATATTC
CTGGAACAAAAATGGTTTTCGCCGGTATCAAAAAGAAAAACGAACGTGCA
GGTGAGTACTTTTCCATTGGTTATCCAAAACCATTAACATAAATCCTTTG
GACGCTAAGATAATATGAAATCAAGGACAGAAAAAACTAGTGAATGTTTA
GGCTTACAAGCACTTTTTTACAAGAATTTAGCAGGTAAATTTTGCAAGCT
TTAGTGGAACTCAAAGATCTAAACAGATTTATCTCATTTTTTATTTCTTT
TTTAGATTTGATCGCCTACTTGGAGGAAACAACCACCAAATAAATGCACA
CTCAACCATTTAAATAATCAACCACCGTAGTTAGTCGAAAAAAAAACTTT
TTATTTATCAATGCCTGTAAAATTTTTTTGTGAAATTTTTTATAACAAAT
CAACTTACTTTATCTATGACCAATACAATTTTGGAAGAGTCGTAAAAATT
AAAATTGTTGGATCCCTGTATATTTTTTTAACATCTTCTATTTACTTTTG
GCTATAGCCCACGATGCTCGATGGAAATAGATGATTTTTGAGTGATAAAA
CTAATTAGAATCATACAAAGTTATTAATGTATTTATGTGAATTTTATGTA
CAGCACGATTTTGTTAGGACTTGCACCTCTTGGTACTATAACAAGAAGAA
TGACTTGAGTTTTAGTTGATAAATTTAGCCCTTAAAATCACTGTTAACGG
TCGGGGATGTGGAGGTGCCTTATAAGAAACATTTTTTATTAGGAATATCG
ATGTTTTATAAGAAACATTTTTTATAAGAATATCAATCATTTCAGTTAGG
GTTAGGGTTGGAGCCCGAAACAATAGCATAATTATACTAATTATGCTATT
AATGATGTAATCTTTACTATACGAGATTTTTCATTGATCGCCCTCTTAAA
GTCAAAAAAATTATTTTTTTCAAGCAAGAGGGCTAAAAAGGAGGCTCGGA
AAACACGAGTTAAAA Coding sequence (CDS) from alignment at scaffold_404:76356..78170- >TCONS_00063922 ID=TCONS_00063922|Name=TCONS_00063922|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_404:76356..78170- (Clytia hemisphaerica)
ATTTGATCGCCTACTTGGAGGAAACAACCACCAAATAAATGGGTAAAGGA
AAGAAAGATTCTGGACCAATCCCTGGAGATGCCACTAAAGGTGCTAAAGT
CTTCAAACAAAGATGTTCACAATGTCACACTGTAGAAAATGGTGGCAAAC
ACAAAACTGGACCAAATCTTTATGGACTTATTGGTAGAAAGACTGGCCAA
GCCGCCAACTTCAGTTATACAGATGCTAATAAAAAGAAGGGAATCACCTG
GAGCAAAGATACACTTTGGGTATACCTTGAGAACCCAGCCAAATATATTC
CTGGAACAAAAATGGTTTTCGCCGGTATCAAAAAGAAAAACGAACGTGCA
GATTTGATCGCCTACTTGGAGGAAACAACCACCAAATAAATGGGTAAAGG
AAAGAAAGATTCTGGACCAATCCCTGGAGATGCCACTAAAGGTGCTAAAG
TCTTCAAACAAAGATGTTCACAATGTCACACTGTAGAAAATGGTGGCAAA
CACAAAACTGGACCAAATCTTTATGGACTTATTGGTAGAAAGACTGGCCA
AGCCGCCAACTTCAGTTATACAGATGCTAATAAAAAGAAGGGAATCACCT
GGAGCAAAGATACACTTTGGGTATACCTTGAGAACCCAGCCAAATATATT
CCTGGAACAAAAATGGTTTTCGCCGGTATCAAAAAGAAAAACGAACGTGC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063922-exon-scaffold_404-1575043694:77270..78170 | TCONS_00063922-exon-scaffold_404-1575043694:77270..78170 | Clytia hemisphaerica | exon |
| TCONS_00063922-exon-scaffold_404-1575043694:76356..77065 | TCONS_00063922-exon-scaffold_404-1575043694:76356..77065 | Clytia hemisphaerica | exon |
| TCONS_00063922-exon-scaffold_404-1510915933:77270..78170 | TCONS_00063922-exon-scaffold_404-1510915933:77270..78170 | Clytia hemisphaerica | exon |
| TCONS_00063922-exon-scaffold_404-1510915933:76356..77065 | TCONS_00063922-exon-scaffold_404-1510915933:76356..77065 | Clytia hemisphaerica | exon |
| TCONS_00063922-exon-scaffold_404-1491911889:77270..78170 | TCONS_00063922-exon-scaffold_404-1491911889:77270..78170 | Clytia hemisphaerica | exon |
| TCONS_00063922-exon-scaffold_404-1491911889:76356..77065 | TCONS_00063922-exon-scaffold_404-1491911889:76356..77065 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:76356..78170 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0009055 | electron carrier activity |
| GO:0020037 | heme binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0009055 |
electron carrier activity |
| molecular_function |
GO:0020037 |
heme binding |
Blast
BLAST of TCONS_00063922 vs. Swiss-Prot (Human)
Match: CYC (Cytochrome c OS=Homo sapiens GN=CYCS PE=1 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 1.414e-46 Identity = 75/102 (73.53%), Postives = 83/102 (81.37%), Query Frame = 1
Query: 625 GDATKGAKVFKQRCSQCHTVENGGKHKTGPNLYGLIGRKTGQAANFSYTDANKKKGITWSKDTLWVYLENPAKYIPGTKMVFAGIKKKNERADLIAYLEETT 930
GD KG K+F +CSQCHTVE GGKHKTGPNL+GL GRKTGQA +SYT ANK KGI W +DTL YLENP KYIPGTKM+F GIKKK ERADLIAYL++ T
Sbjct: 2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103
The following BLAST results are available for this feature:
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