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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063935 ID=TCONS_00063935|Name=TCONS_00063935|organism=Clytia hemisphaerica|type=transcript|length=3076bp
ATGATTGCCTTACCTTCCTCCACCACCACACTTCAGTTGACGCCAAATAG
AAACCATACTTTCGATGGAGTTAAGAAGTATCAGCGAGTTAGAAGAAAAG
TGGATTACCCCTTTAAGTAAAGTTAAATTCTGACAAAAATGCCACAAATT
CAAATGATAAGCGGTGTTTTTCGATTATTAGATCATTTAAAACCGGAATT
CATGATAAGTTTTTGGTGCGTGCCATAAATCCGAACGACGTGTAATCTGA
TccggaacaatattcaatccgTGTTTCTCAATCACCCAAATAAAAgttgt
caaaatattaagatatCAAAAACACATCCAAGACAGGCATCAAGTGTTGG
AATGAGGGATATGACAAGTTTGTACGTGAAGCAAAAATAGAAGGTCACTT
GTTTTTGAGAAAACTTCTCATAACATATTACTACAAAAATTGGTAGCAGA
AGGAATATCGACacaaaaatcaatcaataaaaGTAATCTCTCAAACGGAC
ACGGCTACGGACCACATTGGTCGACGACTCTCCATAAATGAAATTGTACG
GTCAGATAGCACTATGGGTTTACACTCTCTTGTCTCTTACATTATTGGCT
AGTTGCTTGCCACACGACCCATCAAATGAAAAATCACGTGGTCAACCATC
CTTCATAATCGACTATCAAAATGATTGTTTCCTTAAAGATGGAAAGCCGt
tccggtatatttccggtGGATTACATTATTTCCGGATTCCTTCGTTCTAT
TGGAAAGATCGAATACAAAAAGCAAAAGCACTTGGTTTAAACACTATACA
GACCTATATACCATGGAATTTCCACAATCCAGAACCAGGGGTATACAAAT
TTAATGGCGAACAAGATTTATTGAAGTTTATAGATGTGGTACAAGAAGAA
GGCATGCTGTTGATTCTACGCCCAGGACCTTATGTTGATGCTGAATGGGA
GTATGGAGGTTTCCCATGGTTCCTTAAGAATGAACAAACAATGGAAATGA
GAACTTCAGATCCAACCTATATGCGTTATGTTCAGGGATGGTTTGACATG
CTTTTTCCAAGATTAGCAATGAAACTGTACAAAAATGGAGGACCGATTAT
AGCATTTCAAGTAGAGAACGAATATGGAAATTATTATGCATGCGATAAAG
AATATCTTTCACTTCTCAAGAGTATATATGTGAAATATTTTGGTGAAGAT
ACAGTTCTATTTACAACAGATGGGTATACGGACAACTATGTCTTGCGGAA
CAACTCCGGAAATCTTTGCAACTATTGATTTCGGAACTGAGATTACGCCG
GAGGAAGCATTTGCACAACAGCGGAAATATCAAACGAAAGGACCCCTTGT
GAATTCTGAATACTATACAGGCTGGTTAGACTATTGGGGAAGTCCTCATC
AGCGACGTGGTGCTGACGTCATTGCAAAACacttgaaagatattttaaca
acaAATGCTTCCTTGAATCTATACATGCTTCACGGAGGAACAAACTTCGG
TTTCATGAATGGTGTAGATATAGGTTCTAAAGGGTCTCGATTGATATCAC
CAACCAGCTATGACTATGATGCTCCTTTATCTGAAGCTGGTGACACGACC
TGGAAGTATTTCAAAATGCGAGAAGTTTTGAAACAATTCAATGCAAATCC
TTTACCTGCAGTCCCAGCAAACACTTCAAAACTGGTTCAAGGAGCTTTAC
GAGTACCACCACTGAAAACATTTGTTGATTTTAAAGGATACTTAGTCTAT
TGGGGTCTAAATGTTATTGAAAGTGATTCTCCAAAACCAATGTCCGAGCT
CGGTCTTGGTTATGGCTTCGTTTGTTATACACCACAAATCCCTCCAAAAT
ATCAGAATAAAACAGTAACATTGGTTTTCAAAGAAATGTCAGATGAAGCT
ATATTCGTCGTTGATAATGTTTATAAATTTAGTATTGGAGAAGCGGTCAA
GAACTACGAGTTGAAGATAGAACTAGGTGTTGAGTTGGATATTTTGGTAG
TTAACCAAGGTCGAGCAGCTTATGCACCCAAAGGATATCATTATCTTCAA
GAATGTAAAGGAATATGTGGAGATGTGAGATTCAAAGATTCCAATGAAAC
GTTGAAAGGATGGAAGCAGTATAATATTAATGATACAACCATTTGGGAAG
AGAATCACCCAAACTTTCCTGCTGAGAATCATATCGGAAAGACCACCAAA
GGATCAGACCTGATGGATAGATTCTTTGAAGATAGTGAAAATCGCAAAGA
AGATCAATTCAAAATCCAACCAATATTACCGATCGAAAACAACCTGGATA
GATATCCTAGTCAGATAAAATCAACACAAAAAGAATACCAATTTGTTTGG
GAATCGTTTTTCGCCCTACAAAACACCACTGATACATATTTACGAATGAA
AGGTTTCAATAAGGGTCAAGTCTATCTCAACATGTATAACTTGGGTCGAT
TTTGGCAAGAAAAAGGGCCACAAAAGACTTTGTTCGTACCAAAGAATTAT
CTGCAAGCCGGTTTAAATGTTCTTTTGGTAATAGCTTTGGATGATTATCC
AACACTCCAACTTAATCCGCCTCAGTATCCAGAATTTGAATTTGTGGTTC
AACCTGACTTAGgataaatttagtttttctaaattctCTATATAGTAGAT
ATTTAGGATTTTTAGCCAAAATCTAGATTATTTTTAACTGAATTGTATGT
TGGCAATATAGAGAGGTGTACTGGTTTCCTGAATTGCGATTTCTGGAAAC
GAAAAGAAGATTCAAAAAACGATACTGATAGGTTTAAAACTTCTTGCTTT
TAAGGTTAGGGCCCCGGTTGATATGTCTCCCTAATGGGAATGGTAATGAG
GAGCTGAAAGCTCTTTCCCCGCGTAAGCTTTTTCAATAGAGGACGTGTGG
CTCCACTGGCTGGAGAAGCAGAAATACTCTTTAGAATATTACggaactcg
aacctctataacttaaAATGTCGACTTAAGCCGAACATTCAGTCagcaat
gccttataaaccttactccacaactcgaaatttccttaaactCGTGCTCC
CCGttcgtgttcgagttatggagact Run BLAST on NCBI transcript from alignment at scaffold_404:435890..440426- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063935 ID=TCONS_00063935|Name=TCONS_00063935|organism=Clytia hemisphaerica|type=transcript|length=4537bp|location=Sequence derived from alignment at scaffold_404:435890..440426- (Clytia hemisphaerica)
ATGATTGCCTTACCTTCCTCCACCACCACACTTCAGTTGACGCCAAATAG
AAACCATACTTTCGATGGAGTTAAGAAGTATCAGCGAGTTAGAAGAAAAG
TGGATTACCCCTTTAAGTAAAGTTAAATTCTGACAAAAATGCCACAAATT
CAAATGATAAGCGGTGTTTTTCGATTATTAGATCATTTAAAACCGGAATT
CATGATAAGTTTTTGGTGCGTGCCATAAATCCGAACGACGTGTAATCTGA
TCCGGAACAATATTCAATCCGTGTTTCTCAATCACCCAAATAAAAGTTGT
CAAAATATTAAGATATCAAAAACACATCCAAGACAGGCATCAAGTGTTGG
AATGAGGGATATGACAAGTTTGTACGTGAAGCAAAAATAGAAGGTCACTT
GTTTTTGAGAAAACTTCTCATAACATATTACTACAAAAATTGGTAGCAGA
AGGAATATCGACACAAAAATCAATCAATAAAAGTATGATATAATAATATG
TCTATATGAAAAGTTTTTTTTTAATTCATCATCAAAAATCTTTGTATAGA
AGGGAATCGCGATTATCGAGTGAGAACGGATAGTGTTCTACAAAGGAAAA
ATGATAAATGAATAAAAAATAGACCTTGTTAGAAAAAATAAGATTTGCTG
CTGGAAAACTTTCTATTAATAGGAAGGCACAGTTAGTTTATTCATAGCTA
TTTGTTTGCAGTACAAGCCTCTTGTGGTGAGAGTGAGGTCTCATCCAAGT
CAATTCAAGTTTGGGGCTCAAGAAGTCATGTGGTTTATATCTATGGTCAA
CTATACAGCACGAATTCATGAAACATTTAAACTCAACTAAGTTGTTGACA
AATGGCGAAGCAAGAAAATGTTGATAAAGGAAGGGTATATTCTTAAAAGC
ACGCGTGAATTTATGACAAAAACAAGTATATTTTTCTACTTTAGTCAAGG
GCATAATTAACGCATAATTCTGAAGTTTTCATACATTCTTCTCTTTTCAG
GTAATCTCTCAGACGGACACGGCTACGGACCACATCGGTCGACGACTCTC
CATAAATGAAATTGTACGGTCAGATAGCACTATGGGTTTACACTCTCTTG
TCTCTTACATTATTGGCTAGTTGCTTGCCACACGACCCATCAAATGAAAA
ATCACGTGGTCAACCATCCTTCATAATCGACTATCAAAATGATTGTTTCC
TTAAAGATGGAAAGCCGTTCCGGTATATTTCCGGTGGATTACATTATTTC
CGGATTCCTTCGTTCTATTGGAAAGATCGAATACAAAAAGCAAAAGCACT
TGGTTTAAACACTATACAGACCTATATACCATGGAATTTCCACAATCCAG
AACCAGGGGTATACAAATTCAATGGCGAACAAGATTTATTGAAGTTTATA
GATGTGGTACAAGAAGAAGGCATGCTGTTGATTCTACGCCCAGGACCTTA
TGTTGATGCTGANAATTCATCATCAAAAATCTTTGTATAGAAGGGAATCG
CGATTATCGAGTGAGAACGGATAGTGTTTTACAAAGGAAAAATGATAAAT
GAATAAAAAATAGACCTTGTTAGAAAAAATAAGATTTGCTGCTGGAAAAC
TTTCTATTAATAGGAAGGCACAGTTAGTTTATTCATAGCTATTTGTTTGC
AGTACAAGCCTCTTGTGGTGAGAGTTAGCTCTCATCAAAGTCAATTCAAG
TTTGGGGCTCAAGAAGTCATGTGGTTTATTTCTATGGTCAACTATACAGC
ACATATTCATGAAACATTTAAACTCAACTAAGTTGTTGACAAATGGCGAA
GCAAGAACATGTTGATAAAGGAAGGGTATATTCTTAAAAGCACGCGTGAA
TTTATGACAAAAACAAGTATATTTTTCTACTTTAGTCAAGGGCATAATTA
ACGCATAATTCTGAAGTTTTCATACAATTTCTTCTCTTTTCAGGTAATCT
CTCAAACGGACACGGCTACGGACCACATTGGTCGACGACTCTCCATAAAT
GAAATTGTACGGTCAGATAGCACTATGGGTTTACACTCTCTTGTCTCTTA
CATTATTGGCTAGTTGCTTGCCACACGACCCATCAAATGAAAAATCACGT
GGTCAACCATCCTTCATAATCGACTATCAAAATGATTGTTTCCTTAAAGA
TGGAAAGCCGTTCCGGTATATTTCCGGTGGATTACATTATTTCCGGATTC
CTTCGTTCTATTGGAAAGATCGAATACAAAAAGCAAAAGCACTTGGTTTA
AACACTATACAGACCTATATACCATGGAATTTCCACAATCCAGAACCAGG
GGTATACAAATTTAATGGCGAACAAGATTTATTGAAGTTTATAGATGTGG
TACAAGAAGAAGGCATGCTGTTGATTCTACGCCCAGGACCTTATGTTGAT
GCTGAATGGGAGTATGGAGGTTTCCCATGGTTCCTTAAGAATGAACAAAC
AATGGAAATGAGAACTTCAGATCCAACCTATATGCGTTATGTTCAGGGAT
GGTTTGACATGCTTTTTCCAAGATTAGCAATGAAACTGTACAAAAATGGA
GGACCGATTATAGCATTTCAAGTAGAGAACGAATATGGAAATTATTATGC
ATGCGATAAAGAATATCTTTCACTTCTCAAGAGTATATATGTGAAATATT
TTGGTGAAGATACAGTTCTATTTACAACAGATGGGTATACGGACAACTAT
GTCTTGCGGAACAACTCCGGAAATCTTTGCAACTATTGATTTCGGAACTG
AGATTACGCCGGAGGAAGCATTTGCACAACAGCGGAAATATCAAACGAAA
GGACCCCTTGTGAATTCTGAATACTATACAGGCTGGTTAGACTATTGGGG
AAGTCCTCATCAGCGACGTGGTGCTGACGTCATTGCAAAACACTTGAAAG
ATATTTTAACAACAAATGCTTCCTTGAATCTATACATGCTTCACGGAGGA
ACAAACTTCGGTTTCATGAATGGTGTAGATATAGGTTCTAAAGGGTCTCG
ATTGATATCACCAACCAGCTATGACTATGATGCTCCTTTATCTGAAGCTG
GTGACACGACCTGGAAGTATTTCAAAATGCGAGAAGTTTTGAAACAATTC
AATGCAAATCCTTTACCTGCAGTCCCAGCAAACACTTCAAAACTGGTTCA
AGGAGCTTTACGAGTACCACCACTGAAAACATTTGTTGATTTTAAAGGAT
ACTTAGTCTATTGGGGTCTAAATGTTATTGAAAGTGATTCTCCAAAACCA
ATGTCCGAGCTCGGTCTTGGTTATGGCTTCGTTTGTTATACACCACAAAT
CCCTCCAAAATATCAGAATAAAACAGTAACATTGGTTTTCAAAGAAATGT
CAGATGAAGCTATATTCGTCGTTGATAATGTTTATAAATTTAGTATTGGA
GAAGCGGTCAAGAACTACGAGTTGAAGATAGAACTAGGTGTTGAGTTGGA
TATTTTGGTAGTTAACCAAGGTCGAGCAGCTTATGCACCCAAAGGATATC
ATTATCTTCAAGAATGTAAAGGAATATGTGGAGATGTGAGATTCAAAGAT
TCCAATGAAACGTTGAAAGGATGGAAGCAGTATAATATTAATGATACAAC
CATTTGGGAAGAGAATCACCCAAACTTTCCTGCTGAGAATCATATCGGAA
AGACCACCAAAGGATCAGACCTGATGGATAGATTCTTTGAAGATAGTGAA
AATCGCAAAGAAGATCAATTCAAAATCCAACCAATATTACCGATCGAAAA
CAACCTGGATAGATATCCTAGTCAGATAAAATCAACACAAAAAGAATACC
AATTTGTTTGGGAATCGTTTTTCGCCCTACAAAACACCACTGATACATAT
TTACGAATGAAAGGTTTCAATAAGGGTCAAGTCTATCTCAACATGTATAA
CTTGGGTCGATTTTGGCAAGAAAAAGGGCCACAAAAGACTTTGTTCGTAC
CAAAGAATTATCTGCAAGCCGGTTTAAATGTTCTTTTGGTAATAGCTTTG
GATGATTATCCAACACTCCAACTTAATCCGCCTCAGTATCCAGAATTTGA
ATTTGTGGTTCAACCTGACTTAGGATAAATTTAGTTTTTCTAAATTCTCT
ATATAGTAGATATTTAGGATTTTTAGCCAAAATCTAGATTATTTTTAACT
GAATTGTATGTTGGCAATATAGAGAGGTGTACTGGTTTCCTGAATTGCGA
TTTCTGGAAACGAAAAGAAGATTCAAAAAACGATACTGATAGGTTTAAAA
CTTCTTGCTTTTAAGGTTAGGGCCCCGGTTGATATGTCTCCCTAATGGGA
ATGGTAATGAGGAGCTGAAAGCTCTTTCCCCGCGTAAGCTTTTTCAATAG
AGGACGTGTGGCTCCACTGGCTGGAGAAGCAGAAATACTCTTTAGAATAT
TACGGAACTCGAACCTCTATAACTTAAAATGTCGACTTAAGCCGAACATT
CAGTCAGCAATGCCTTATAAACCTTACTCCACAACTCGAAATTTCCTTAA
ACTCGTGCTCCCCGTTCGTGTTCGAGTTATGGAGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063935-exon-scaffold_404-1575043694:439945..440426 | TCONS_00063935-exon-scaffold_404-1575043694:439945..440426 | Clytia hemisphaerica | exon |
| TCONS_00063935-exon-scaffold_404-1575043694:435890..438483 | TCONS_00063935-exon-scaffold_404-1575043694:435890..438483 | Clytia hemisphaerica | exon |
| TCONS_00063935-exon-scaffold_404-1510915933:439945..440426 | TCONS_00063935-exon-scaffold_404-1510915933:439945..440426 | Clytia hemisphaerica | exon |
| TCONS_00063935-exon-scaffold_404-1510915933:435890..438483 | TCONS_00063935-exon-scaffold_404-1510915933:435890..438483 | Clytia hemisphaerica | exon |
| TCONS_00063935-exon-scaffold_404-1491911889:439945..440426 | TCONS_00063935-exon-scaffold_404-1491911889:439945..440426 | Clytia hemisphaerica | exon |
| TCONS_00063935-exon-scaffold_404-1491911889:435890..438483 | TCONS_00063935-exon-scaffold_404-1491911889:435890..438483 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:435890..440426 - |
Blast
BLAST of TCONS_00063935 vs. Swiss-Prot (Human)
Match: GLB1L (Beta-galactosidase-1-like protein OS=Homo sapiens GN=GLB1L PE=2 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 2.159e-98 Identity = 99/192 (51.56%), Postives = 131/192 (68.23%), Query Frame = 1
Query: 649 SFIIDYQNDCFLKDGKPFRYISGGLHYFRIPSFYWKDRIQKAKALGLNTIQTYIPWNFHNPEPGVYKFNGEQDLLKFIDVVQEEGMLLILRPGPYVDAEWEYGGFPWFLKNEQTMEMRTSDPTYMRYVQGWFDMLFPRLAMKLYKNGGPIIAFQVENEYGNYYACDKEYLSLLKSIYVKYFGEDTVLFTTDG 1224
SF++D +D FL DG PFRY+SG LHYFR+P W DR+ K + GLN IQ Y+PWN+H P+PGVY FNG +DL+ F++ +L+ILRPGPY+ AEWE GG P +L + + +RTSDP ++ V WF +L P++ LY NGG II+ QVENEYG+Y ACD Y+ L ++ GE +LFTTDG
Sbjct: 29 SFVVDRGHDRFLLDGAPFRYVSGSLHYFRVPRVLWADRLLKMRWSGLNAIQFYVPWNYHEPQPGVYNFNGSRDLIAFLNEAALANLLVILRPGPYICAEWEMGGLPSWLLRKPEIHLRTSDPDFLAAVDSWFKVLLPKIYPWLYHNGGNIISIQVENEYGSYRACDFSYMRHLAGLFRALLGEKILLFTTDG 220 HSP 2 Score: 159.844 bits (403), Expect = 2.159e-98 Identity = 101/265 (38.11%), Postives = 144/265 (54.34%), Query Frame = 2
Query: 1238 MSCGTTPEIFATIDFGTEITPEEAFAQQRKYQTKGPLVNSEYYTGWLDYWGSPHQRRGADVIAKHLKDILTTNASLNLYMLHGGTNFGFMNGVDIGSKGSRLISPTSYDYDAPLSEAGDTTWKYFKMREVLKQFNANPLPAVPANTSKLVQGALRVPPLKTFVDFKGYLVYWGLNVIESDSPKPMSELGLGYGFVCYTPQIPPKYQNKTVTLVFKE-MSDEAIFVVDNVYKFSIGEAVKN-YELKIELGVELDILVVNQGRAAYA 2026
+ CG+ ++ T+DFG + F RKY+ GPLVNSEYYTGWLDYWG H R + K L+++L AS+N+YM HGGTNFG+ NG D KG L TSYDYDAP+SEAGD T K F +R+V+ +F PL +P + K++ G + + + + F L G I S P + +GF+ Y + T V + D A +VD V++ + +++ L +LG +LDILV N GR ++
Sbjct: 224 LKCGSLRGLYTTVDFGPADNMTKIFTLLRKYEPHGPLVNSEYYTGWLDYWGQNHSTRSVSAVTKGLENMLKLGASVNMYMFHGGTNFGYWNGAD--KKGRFLPITTSYDYDAPISEAGDPTPKLFALRDVISKFQEVPLGPLPPPSPKMMLGPVTLHLVGHLLAFLDLLCPRG--PIHSILPMTFEAVKQDHGFMLYRTYMTHTIFEPTPFWVPNNGVHDRAYVMVDGVFQGVVERNMRDKLFLTGKLGSKLDILVENMGRLSFG 484
The following BLAST results are available for this feature:
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