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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063948 ID=TCONS_00063948|Name=TCONS_00063948|organism=Clytia hemisphaerica|type=transcript|length=2020bp CCAACACAAAAAAATGTGTTGCTCAAGCTAATAGCGAAAAACGCAACTCA ATCAGATCACTTTGAACCGTCGCGTAGTGAGGAGCTCTGTCATTTTTCTa tcatttttgcaaaaagagaTAAAAACGCAACGGGACAAGTAGTAAAGCTT CAGGAAATATAagacattttagattttttgggggttgttttttcaattta tcGATGTATTGAAAATGGTCAGCTTTGCACTTGCAGAATTAATGGCTGAC TTGACATTGCTTTTGGTACCAAATCATGAACGTTAATTGGCTGCTTAATA TATTCGGATTATTCATCATCACGTGTTGTTACGAGCAAAAGGCATTAAGT TTTACATACCGTAGAACGGGCAACCAACATCAACTACTACCCGACTCAAC GGACGATACCCTGACAGCAAACTTAGACATTGACACAAGTGAAGACTTAT CGAGTACATCATTCATAAAGAAAATCGATTCCAATATTCAAGAACTCGAA AAAGACACTTCAACAAAAGATCTAGATTTAAAAGCGATGGAAAACCTCGA TAAAACCGACGAATCAACGAATCAACGAAATACGCGACATAATACTGGGA AAGATCAGAACACTCAAGGCATGAGCACTAAAAAGACACGCGTTAATAAA GCAGATCGTGTTGTACCGAGCACGGTTCACGCTATCTTAAATGCACCAAC GAACACAATGAGAGCTTACTTACGTTCGAAGACTGGACTCTATTTAAGGA TGGGACCCAATGGTGAATTGGGTGGcacaagaaaaatgaaagataaGCAT GTTATATTCGTCATTGAGAGGATGTCAAAAGACGCGGTCCGTCTGAAAGG TGAAGCCGCCAATAAATACATCTGTATCAATAAGAGGAGAAAGCTATTCA CAAGGgagaAACCAAATTCCAAATGTCTGCTAAGGAGCTACTTAGAGGAA AATCATTACGAACTATTCTGGTCTTACATGTATTCTAAAAAGACTGATGG CGAGAACGGTTGGTTCTTAGCTTTAAAAAGGAACGGTAAAATCAGGAAAC CAGCTAATACAAAAATCGGAGACCGACAGACTATGTTTTTCGTGCATCGA GCAGATGATATTCCAAGCGGATCTTGATTTCCAATTGGTTCATTGAGCAG AGTGAGGATTCGATGAGCTGTAATGATACGTTGCTATGAAACCAAGTGCA AGTTGTTATTtgtcaaaaatgacgtcaatgAAGATCTGATTGGTAGAAAA TGATATCATTAAGTAATCCAAAATTGACTGCATATNCAGTGCAAGTTGTT ATTcgtcaaaaatgacgtcaatgAAGATCTGATTGGTAGAAAATGATATC ATTATGTAATAAATTGACTGAATATTGAATCTGGTCAAGAAACGGAAGAA TGTTATCCATAGCGAAAAAGCTAGAACGGATTGGTGTGACATGAAATATT GTTCATGCCAAGAGTTAAAGTGGTTGTACCGACAATAAAAGCTAGAATGG AACGCTAGAAATTAATAGAATTCGCAATTGTGAATCTGTATAAATATCAA TGTGCCTAAAACAGACAATGTAACAATTCAAACGGTGGACCAattctaga aaaataaaaacgaaagtgtTTTTAAAAAGGAGAATTCCATGGCTAAATTT TCCCTGAAAAGTGAAAAGATATTCCTGAAAAATTATCGATTgtatttttt tatcatatttttgtaGCTAATGGAAGcagaaaatttaacaaaataattta ttttatcaAGGTTTATTACAAATATTTTCGACCCACTTTATTAGGGTTTT ATTTTATAACTTATTAACTTACATAATGAATTAAAattgtggtaaatctt tttcaaattattttgaatgaaattaagttcttgattcaaatttttatgGT CGAAAAATGGTAAGTAttattttttgtaaagttttaagagTTTTTTCCCC GTCctttaaaaatgtaaatatgaaaaaatattttatgataAATTATGTTT AAATATAAGTTATACGttgg Run BLAST on NCBI transcript from alignment at scaffold_404:597855..605983- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063948 ID=TCONS_00063948|Name=TCONS_00063948|organism=Clytia hemisphaerica|type=transcript|length=8129bp|location=Sequence derived from alignment at scaffold_404:597855..605983- (Clytia hemisphaerica) CCAACACAAAAAAATGTGTTGCTCAAGCTAATAGCGAAAAACGCAACTCA
ATCAGATCACTTTGAACCGTCGCGTAGTGAGGAGCTCTGTCATTTTTCTA
TCATTTTTGCAAAAAGAGATAAAAACGCAACGGGACAAGTAGTAAAGCTT
CAGGAAATATAAGACATTTTAGATTTTTTGGGGGTTGTTTTTTCAATTTA
TCGATGTATTGAAAATGGTCAGCTTTGCACTTGCAGAATTAATGGCTGAC
TTGACATTGCTTTTGGTACCAAATCATGAACGTTAATTGGCTGCTTAATG
TGAGTGAATTTGTGAGTTCATGTATGGAACACACACAGGTACTGTCGGTA
AACATGGATAGGAGATTTAGAGGGTGGTCAAAGGTTTCCATGTGAAAAGT
ACTGTACAATCTGCTTTCCATTTCTACATATTACCGGCAGTGTGAAACTT
TCCTCGAAACAACCCTTGATTAATTTTCAATGTGTTTGCGAGACTTTTTA
AAGGAGGAGCATATATATGTGTTATCATTTTGCCTTGTCTGTATTCCATA
TTTTTGCACAAGTCAGGCGAGCGACAAGGCAAAATTTAACCGCAAATCAA
AATGAGCGAATTTCATTCAGAAAATTTAATCAACTAATATGGGCCATTGG
GTTGATTGTACATTCAATTGAAATGGATTAAAACGAAGCCTTCATCTTTT
TTACATGATTGCAACGGAAAGAAAGAGAGAAAAAGGCACAAGAAAGGATC
AGGTCGGCTTGTTAGATTGTCGACAGTTTAATCGAGCCTGTAGATTCCAT
TAACCAAAATGTCCTTAAGGGCGGACAGACTTTGTTATAAAAGATGAAGG
TTAAAATGCGATCAGCTCGACTTAACTTAATATGATGTTAAAATTCTTAA
AGTTTTAAAACACTTTCATTCAACTAAATGATATCGGAAAGAAAAGTAAA
AATTGAAAAAAGTTCATCAATAAAACAAATGGCGCTTGAAAAAATTCCCA
CTGATTAGTCGAGAAAAAAGAATTCTTCCTTGATTTCTTAACCAGCCCCT
TGCTTATAGCTTTAAATTAACTATTACTCAGGTCCCTCCTCTTGGTTGAT
TGGCTTTTAAACTGTCTTAATTGAAAATGACCGTGTTTTCAATTGGTTCC
AATAAATGTTCTTGAGAGCTTCCCCAGTAAAATGGCGTTTGAATAAACTA
ATTTTGCATAACTAAAATTCTACTGATATCAATATACTGTTGGACTAATT
TTTTATTTTATTTTTATTTTTCCGTTCTTAGATATTCGGATTATTCATCA
TCACGTGTTGTTACGAGCAAAAGGCATTAAGTTTTACATACCGTAGAACG
GGCAACCAACATCAACTACTACCCGACTCAACGGACGATACCCTGNCTTT
TGGTACCAAATCATGAACGTTAATTGGCTGCTTAATGTGAGTGAATTTGT
GAGTTCATGTATGGAACACACACAGGTACTGTCGGTAAACATGGATAGGA
GATTTAGAGGGTGGTCAAAGGTTTCCATGTGAAAAGTACTGTACAATCTG
CTTTCCATTTCTACATATTACCGGCAGTGTGAAACTTTCCTCGAAACAAC
CCTTGATTAATTTTCAATGTGTTTGCGAGACTTTTTAAAGGAGGAGCATA
TATATGTGTTATCATTTTGCCTTGTCTGTATTCCATATTTTTGCACAAGT
CAGGCGAGCGACAAGGCAAAATTTAACCGCAAATCAAAATGAGCGAATTT
CATTCAGAAAATTTAATCAACTAATATGGGCCATTGGGTTGATTGTACAT
TCAATTGAAATGGATTAAAACGAAGCCTTCATCTTTTTTACATGATTGCA
ACGGAAAGAAAGAGAGAAAAAGGCACAAGAAAGGATCAGGTCGGCTTGTT
AGATTGTCGACAGTTTAATCGAGCCTGTAGATTCCATTAACCAAAATGTC
CTTAAGGGCGGACAGACTTTGTTATAAAAGATGAAGGTTAAAATGCGATC
AGCTCGACTTAACTTAATATGATGTTAAAATTCTTAAAGTTTTATAACAC
TTTCATTCAACTAAATGATATCGGAAAGAAAAGTAAAAATTGAAAAAAGT
TCATCAATAAAACAAATGGCGCTTGAAAAAATTGCCACTGATTAGTCGAG
AAAAAAGAATTCTTCCTTGATTTCTTAACCAGCCCCTTGCTTATAGCTTT
AAATTAACTATTACTCAGGTCCCTCCTCTTGGTTGATTGGCTTTTAAACT
GTCTTAATTGAAAATGACCGTGCTTTCAATTGGTTCCAATAAATGTTCTT
GAGAGCTTCCCCAGTAAAATGGCGTTTGAATAAACTAATTTTGCATAACT
AAAATTCTACTGATATCAATATACTGTTGGACTAATTTTTTATTTTATTT
TTATTTTTCCGTTCTTAGATATTCGGATTATTCATCATCACGTGTTGTTA
CGAGCAAAAGGCATTAAGTTTTACATACCGTAGAACGGGCAACCAACATC
AACTACTACCCGACTCAACGGACGATACCCTGACAGCAAACTTAGACATT
GACACAAGTGAAGACTTATCGAGTACATCATTCATAAAGAAAATCGATTC
CAATATTCAAGAACTCGAAAAAGACACTTCAACAAAAGATCTAGATTTAA
AAGCGATGGAAAACCTCGATAAAACCGACGAATCAACGAATCAACGAAAT
ACGCGACATAATACTGGGAAAGATCAGAACACTCAAGGCATGAGCACTAA
AAAGACACGCGTTAATAAAGCAGATCGTGTTGTACCGAGCACGGTTCACG
CTATCTTAAATGCACCAACGAACACAATGAGAGCTTACTTACGTTCGAAG
ACTGGACTCTATTTAAGGATGGGACCCAATGGTGAATTGGGTGGCACAAG
AAAAATGAAAGATAAGCATGGTAAGAGAAATTTCTTTTTGCTTTCAGAAT
TTCGAAATGGGAGTGGGCGCTTTCACTATGTCGTAGACATACAACTTCAC
TTCAGACAATTAAGTATACGATGCTCTTTTTTCGACATATTGCTTAAAGA
AAAACAATCGCATAACTTTACGTCATTTGGTCAACCCATGGTCTAAAGTC
AGACTATTGGTTTGCACTTGAGTAAAAGTGGCCAAAATCGTATACGAATT
CGAGACCTTATAGATTACGTGATAACCTGAACACACATGGCAATTTTCCA
ATTTCTCATCCATTTTGCAGGGAATTAAAAATCACAAGCTTTCTCAGCTA
TCCGTTAGCTCTTTTTATTGTAAAATAGAATCGAAAATTCACATGGGCTA
GTCGCTTTATTTGAAGTGCGAGACGCCTGTTGCTAACTCTAAAAGCTTTA
AACGTTGTATGCAAAGCAATGGGATTTTTTTCTTCTCTCGTTTTGTACTT
GTAAAAATACCTATACGTTATGCTATAAACAGGGTTTTAATCCTAATAAT
CTGTCAAGATCATTCTGCTTTACAAATTTATGCTAAGAGCTCCCTTGTTT
CGTCACCTTTTCTCTTTTATTATGGCTTGTTTTTCGAAGCCTTGTCCTTG
TCGTAATCGCGTTTAAATTGTTGTCGATGTTATTGACAGGCGGGCGGATT
CAGAGCACAACATTCTCACACAATAAAACAAGGCGGAAGCCTCTTCTTGC
TATCCTACTTTCCTGCTATGAACAAAAATAGATTGCTTTCCAGAAGGAAG
AGAATTTAAGAAACTCGCTCAGTTCCAACTCAAAGTTTGGTTTCATTCCA
ACTAATACCATTAAAATACTCAATTATTAGGTCTCAGATTACTAATTATA
TTTTTATCGACCAAAATTTCATTTGCATCTTAACCATTTTTACAAATGAA
AAACAACAACAACAGCATTCTGGATTACAGCAGTCTGGGAACATTGGATT
AAGATAAGTTCTCATCGAATCAAAACAAGTGTATTCTTGTAAAAGGGTGT
TAACCGCATAATTGAGAAAAGATATCAAATCAACAATTCTTTTTGCAATA
TTCATTAAATTGAATTTTAACGTCAAGCTTTCCTGGTGCGCTCCCATGCT
CTTCAACTTTAAGGGTCAATAGCTGTATTGAAGGACTAAGAATTTGACAG
CATCAGCTGTTTTGTAGCCATGGTTACATATTTGGATCAAACAATTAGCG
AAAGGAAATTTTTGCGGTGTCATAAACTGAAAAAAATCAATTGAATCAAG
TATGATAAATTTTATTCTACGCCAAATATGATAAACGAATTTACGCATCT
AACTAGGTTGGGGTCAACACATGGCAATTATCAAAAGCAATAGGAGCACA
TTTCCAAGAGGAAGAAAATGAAAAAAATTGGCGAATGGACTTGCTAAATT
GCGCTCTATTGACGCATTAGCGAAATTTATTTCTTGGCGAACGGCTCAAT
TTTTGTTTTTCTCGAAACTACGTGCATTTTTTATCTTATCAGGACATTGT
TTGTGAGTATCTTCTGAGTTTTTGATTACCTTTGCTATTTACTCTGATTA
GGTACAGGCATTGATAACAAGATAGGAGGGTAGTTAAATTAGCGCATTTC
AGTGAGAAATATTGAGATTACAAACGTTTCAACCAAAATAATGAGACATA
AGAAACGAGGGGAGAAAATTACAACGCTTATAAATGCAGAACAGTGTTTA
AGCGAATCAACCAAAATTAATAGACGTCAAAATCGCATTTTCTCGCTTTG
ATTCTCGCAGAGGCACGTTTCCGCATCAAACTGCGGGCATAAAGCGTTTA
ACAAGCTAACTGTGTTTCTGACTGCGCAAAATCTGCTTAAAAATCTATGC
TAGTCGCGCGCACATCTTTTTATTTAACGAACCAAGGTCAAAGCTCTATA
TATTAAAACTTGCAATTGTTGAAATTCATTATGATAGAATCAAAAGGCGA
GGGAGTTTGAAATGCGGAAATTGATCCATCGAGTCAATTCAAAATTGGAG
CGAAAACGGAGATTAGTACACATAGGCATCAACAGAGGTCGAAAAAGCCG
GGTTTTTTAATGCAAAAAAAGTGTGTCAGTTTATGCAAGAGTACAAAAAG
CTTTATCGTTACATAATATCAACTTTCGGAATTGAAATATGAAGTAATAG
GTTAAGGCGTTGCCTCTTCAAATTAGCGAGAGATTCCTTCCTGGCATTTT
AAAGCAAGCTGTGAGATAGCTGAGAAAATGAGAAATAGCATAGGAACAAA
GCGAATTCTGTTTTACAACTGATAAAGTGTATAAAAGTAAGAGAATGAAT
GAGCAAAAATTATTTATTAAAAAGTAAAAATTGCAAAATCGCTACTAGGA
ATGAAAAGAAAAATGAACCATTTTAATTATCAGGGTTATTAGGATGCAGC
CAATACTCCTGTGCTGTGCGGTAAACATCAAAAAGTTTTGCATTTCGAAA
TAATCAAACTGCAAAAAGTAGTGCATCATTAATCATTTTATGAACATGCT
ACCTAGGGTTTTCTCTTTTGTCAATGCATATTTCTATATAATGACATCCC
AAAAATCTTTCTTGCCTTGACCAAAAAAACACATCAACATGTCAATAAAT
CAAAAATGGGAATATTGTAAAATACAAAATATTTATCAATTAGAATTAAA
ACTTCCAGCTAAGAAAGGAAAATTTGACATACTTAATGACGAGTTTTAAG
GCATAAGATCACACATTTAGAATTCAAATAAAAATAGTGAGTCCTATTAT
TGGATATTGTCAAAATTTCAGATCTGACATCACCAATAAGCTTATCATTA
TCAGAAACTCAAAAAAATTCAAAATCTCTCAACTTGAAAAGTCAGATCAA
ATCAGGAGATAATGACAGAAGACGTTTGATAAAAAAGTGATGAGTGGAAA
TGTCAGATATCTGTCCATTGAAAATGACCATTAGACTGTATATTTTGTCA
TTTTTGGAATTAATTCACAAATTTTATCTAACACAAAAATCAGCATTTTT
CCCAAAGACATTTTCAGCAGCGCAAGTTTATTTATTTCAGTCAGTGATAA
TCATCAAAACTTAATTGTGTGACGGGTGTTGACGTCAATAGAATTTGAAT
TTTGCGCAATATATAAATTCCCAAAAAGATTGTCCTCATTTCATGCTTAT
ATCAGGAAAATCCCAAAACTTTACTTCAATTAGAGCTAAAAAGGACAAGA
AAAAAATCTTTAGACATTGAAGAACAGATATACATAGTAGGCAAAGCTAC
CTGCCAGCACTGACAGTACACAAAAGGCACTGATTAAGTCCTAACAAGCA
ACTTTATTTTATTATTTATCGCACGTCTCCTTTTGGGATTAATCTTGACG
CACTACCAGTTTTTAAGATCTAGATCGATAATGTCGTCATTTTGAAGACG
ACAATATATGCGCTTTTCTGAATCAACAAAAAACATGTTTCTAAGACTTT
CTTCTTCCTGAGACAGATAAATAATATCTTACTCATCTTTCTTCTTCAGT
TATATTCGTCATTGAGAGGATGTCAAAAGACGCGGTCCGTCTGAAAGGTG
AAGCCGCCAATAAATACATCTGTATCAATAAGAGGAGAAAGCTATTCACA
AGGGTAAGTCGAAGGAAACTCAATTCTTTTTATTTCAAGATAGAAATGTG
ATGCAATTACCAAAAATTACATTACCAGGGAAAGTTTCGATAGTAAAAAG
AACAAACAAGGCGTTTACAGGTTTGGAAATACCGAAAAAACGTAATGAAA
AAATTACCGCGTCATTATTTTGTAAGTTTCAAACAACAAGTATGGATTAG
ACATTTTCCAAAAATTAAAATGTGACTGGATTATACTAATGATTCAGAAT
TGCCAAGTAATATTAATGACAATAATTTCATTATAAAATACTCATTGAAT
ATGAAAAGTCTTAATTCGATGAGACCTCATCATAAACAACAAAATTCGAT
TAAAATGTATTTTTTTGGTTTGGCTGACTAGGTCAATTAAGTATGTCTAC
TACTGAGCAGTCTTAATGTAATCAAACAACAACATTAATTTTCTTCTGTC
TCTTTTTTTTTCAGGAGAAACCAAATTCCAAATGTCTGCTAAGGAGCTAC
TTAGAGGAAAATCATTACGAACTATTCTGGTCTTACATGTATTCTAAAAA
GACTGATGGCGAGAACGGTTGGTTCTTAGCTTTAAAAAGGAACGGTAAAA
TCAGGAAACCAGCTAATACAAAAATCGGAGACCGACAGACTATGTTTTTC
GTGCATCGAGCAGATGATATTCCAAGCGGATCTTGATTTCCAATTGGTTC
ATTGAGCAGAGTGAGGATTCGATGAGCTGTAATGATACGTTGCTATGAAA
CCAAGTGCAAGTTGTTATTTGTCAAAAATGACGTCAATGAAGATCTGATT
GGTAGAAAATGATATCATTAAGTAATCCAAAATTGACTGCATATNCAGTG
CAAGTTGTTATTCGTCAAAAATGACGTCAATGAAGATCTGATTGGTAGAA
AATGATATCATTATGTAATAAATTGACTGAATATTGAATCTGGTCAAGAA
ACGGAAGAATGTTATCCATAGCGAAAAAGCTAGAACGGATTGGTGTGACA
TGAAATATTGTTCATGCCAAGAGTTAAAGTGGTTGTACCGACAATAAAAG
CTAGAATGGAACGCTAGAAATTAATAGAATTCGCAATTGTGAATCTGTAT
AAATATCAATGTGCCTAAAACAGACAATGTAACAATTCAAACGGTGGACC
AATTCTAGAAAAATAAAAACGAAAGTGTTTTTAAAAAGGAGAATTCCATG
GCTAAATTTTCCCTGAAAAGTGAAAAGATATTCCTGAAAAATTATCGATT
GTATTTTTTTATCATATTTTTGTAGCTAATGGAAGCAGAAAATTTAACAA
AATAATTTATTTTATCAAGGTTTATTACAAATATTTTCGACCCACTTTAT
TAGGGTTTTATTTTATAACTTATTAACTTACATAATGAATTAAAATTGTG
GTAAATCTTTTTCAAATTATTTTGAATGAAATTAAGTTCTTGATTCAAAT
TTTTATGGTCGAAAAATGGTAAGTATTATTTTTTGTAAAGTTTTAAGAGT
TTTTTCCCCGTCCTTTAAAAATGTAAATATGAAAAAATATTTTATGATAA
ATTATGTTTAAATATAAGTTATACGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063948-exon-scaffold_404-1575043694:605685..605983 | TCONS_00063948-exon-scaffold_404-1575043694:605685..605983 | Clytia hemisphaerica | exon |
TCONS_00063948-exon-scaffold_404-1575043694:603064..603565 | TCONS_00063948-exon-scaffold_404-1575043694:603064..603565 | Clytia hemisphaerica | exon |
TCONS_00063948-exon-scaffold_404-1575043694:599431..599534 | TCONS_00063948-exon-scaffold_404-1575043694:599431..599534 | Clytia hemisphaerica | exon |
TCONS_00063948-exon-scaffold_404-1575043694:597855..598969 | TCONS_00063948-exon-scaffold_404-1575043694:597855..598969 | Clytia hemisphaerica | exon |
TCONS_00063948-exon-scaffold_404-1510915933:605685..605983 | TCONS_00063948-exon-scaffold_404-1510915933:605685..605983 | Clytia hemisphaerica | exon |
TCONS_00063948-exon-scaffold_404-1510915933:603064..603565 | TCONS_00063948-exon-scaffold_404-1510915933:603064..603565 | Clytia hemisphaerica | exon |
TCONS_00063948-exon-scaffold_404-1510915933:599431..599534 | TCONS_00063948-exon-scaffold_404-1510915933:599431..599534 | Clytia hemisphaerica | exon |
TCONS_00063948-exon-scaffold_404-1510915933:597855..598969 | TCONS_00063948-exon-scaffold_404-1510915933:597855..598969 | Clytia hemisphaerica | exon |
TCONS_00063948-exon-scaffold_404-1491911889:605685..605983 | TCONS_00063948-exon-scaffold_404-1491911889:605685..605983 | Clytia hemisphaerica | exon |
TCONS_00063948-exon-scaffold_404-1491911889:603064..603565 | TCONS_00063948-exon-scaffold_404-1491911889:603064..603565 | Clytia hemisphaerica | exon |
TCONS_00063948-exon-scaffold_404-1491911889:599431..599534 | TCONS_00063948-exon-scaffold_404-1491911889:599431..599534 | Clytia hemisphaerica | exon |
TCONS_00063948-exon-scaffold_404-1491911889:597855..598969 | TCONS_00063948-exon-scaffold_404-1491911889:597855..598969 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_404 | supercontig | scaffold_404:597855..605983 - |
Blast
The following BLAST results are available for this feature:
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