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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063963 ID=TCONS_00063963|Name=TCONS_00063963|organism=Clytia hemisphaerica|type=transcript|length=1082bp
ttaagtacgGGTTACACTGGGACATTTTCTGTGTGCGAAGTGGATGTTGT
TTATAGAAGAATCAAAAGTAGTCAGTTAAAGAAGAACCGCAGTGATTGTA
GTTATCATGGGAAAaggaggtaatttttttttgatttttctgactcaaag
tgaaacattttttctcaaaaatttaaagtCAGTCGGAGGACACAaaccaa
actatcaattgggCCTAGCCTTGATTCTTATGGCTTCTTTTTGTCGTTTG
GTTTTaggtcaatgtttttggtttttccaaGGTATCTATGTAATTCTTTG
GTTATTGAAGAAATCAATGGCTATGgaagttatcgaaagtaatcaataCC
AATTAGCCCCTTAATTATTAAGTGGCTGTTGGACGGACCCCTTGCTTGAG
GGTGCTTGATGGTGGGTTGCTGGCTATCAAGTATCACCTGGACAAACTTT
GTTCTGAAGATTGACAGAAGAGAGAAAGACCATCCCAAACTTTAACATAC
AAGGTTAGCCCTGGACTCTCGAGGTATACAACTATTTATTTTTATCTCAA
ACATCCAACATCTCAATCACAGCATAAGGGTCCTGAGGAACAGCTGTGCA
TGACAGAACTTGGGTTCACATGTGCAGCTGACCAGGTATAGTTTTTCTGC
TTTTCGTCCTGCTTTCTTTCAAGAGATTTCCCAGCACCTCACAAATAAGG
AACCCTGGTTTGTGTCACATATTTGATTTCTTGGATCTATGGCTACTAAA
TCAACGGATGAAATTGAACCAGAAGGGGAACCAAATGAAGACGTACATAT
TTGGAAACGAATAGTAACAGAGCTATCACTTCAAGCACTGGATCCCCAGA
TCAAATCTTGTCTTCAATCGTATAATCCAGAGAAACCTACAAAATCCATT
ATCGCTACACTgaacaaaagtttcaaaaaatacacAACTCACGACACACT
TAACTTCCTGTCAAAGCAGGAAGTTGAATCTGCTAACAAGAATGAACTTG
TCCGAAAGCTTTGCCTTAaagtcaaaagcttttttccAGATGTATGCAAG
ATCTGCAACATGTCCTATGTTATCAAACTCAA Run BLAST on NCBI protein sequence of TCONS_00063963-protein >TCONS_00063963-protein ID=TCONS_00063963-protein|Name=TCONS_00063963-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MATKSTDEIEPEGEPNEDVHIWKRIVTELSLQALDPQIKSCLQSYNPEKP
TKSIIATLNKSFKKYTTHDTLNFLSKQEVESANKNELVRKLCLKVKSFFP
DVCKICNMSYVIKL Run BLAST on NCBI transcript from alignment at scaffold_404:90589..91670 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063963 ID=TCONS_00063963|Name=TCONS_00063963|organism=Clytia hemisphaerica|type=transcript|length=1082bp|location=Sequence derived from alignment at scaffold_404:90589..91670 (Clytia hemisphaerica)
TTGAGTTTGATAACATAGGACATGTTGCAGATCTTGCATACATCTggaaa
aaagcttttgacttTAAGGCAAAGCTTTCGGACAAGTTCATTCTTGTTAG
CAGATTCAACTTCCTGCTTTGACAGGAAGTTAAGTGTGTCGTGAGTTgtg
tattttttgaaacttttgttcAGTGTAGCGATAATGGATTTTGTAGGTTT
CTCTGGATTATACGATTGAAGACAAGATTTGATCTGGGGATCCAGTGCTT
GAAGTGATAGCTCTGTTACTATTCGTTTCCAAATATGTACGTCTTCATTT
GGTTCCCCTTCTGGTTCAATTTCATCCGTTGATTTAGTAGCCATAGATCC
AAGAAATCAAATATGTGACACAAACCAGGGTTCCTTATTTGTGAGGTGCT
GGGAAATCTCTTGAAAGAAAGCAGGACGAAAAGCAGAAAAACTATACCTG
GTCAGCTGCACATGTGAACCCAAGTTCTGTCATGCACAGCTGTTCCTCAG
GACCCTTATGCTGTGATTGAGATGTTGGATGTTTGAGATAAAAATAAATA
GTTGTATACCTCGAGAGTCCAGGGCTAACCTTGTATGTTAAAGTTTGGGA
TGGTCTTTCTCTCTTCTGTCAATCTTCAGAACAAAGTTTGTCCAGGTGAT
ACTTGATAGCCAGCAACCCACCATCAAGCACCCTCAAGCAAGGGGTCCGT
CCAACAGCCACTTAATAATTAAGGGGCTAATTGGtattgattactttcga
taacttcCATAGCCATTGATTTCTTCAATAACCAAAGAATTACATAGATA
CCttggaaaaaccaaaaacattgacctAAAACCAAACGACAAAAAGAAGC
CATAAGAATCAAGGCTAGGcccaattgatagtttggttTGTGTCCTCCGA
CTGactttaaatttttgagaaaaaatgtttcactttgagtcagaaaaatc
aaaaaaaaattacctcctTTTCCCATGATAACTACAATCACTGCGGTTCT
TCTTTAACTGACTACTTTTGATTCTTCTATAAACAACATCCACTTCGCAC
ACAGAAAATGTCCCAGTGTAACCcgtacttaa Coding sequence (CDS) from alignment at scaffold_404:90589..91670 >TCONS_00063963 ID=TCONS_00063963|Name=TCONS_00063963|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_404:90589..91670 (Clytia hemisphaerica)
GAGTTTGATAACATAGGACATGTTGCAGATCTTGCATACATCTggaaaaa
agcttttgacttTAAGGCAAAGCTTTCGGACAAGTTCATTCTTGTTAGCA
GATTCAACTTCCTGCTTTGACAGGAAGTTAAGTGTGTCGTGAGTTgtgta
ttttttgaaacttttgttcAGTGTAGCGATAATGGATTTTGTAGGTTTCT
CTGGATTATACGATTGAAGACAAGATTTGATCTGGGGATCCAGTGCTTGA
AGTGATAGCTCTGTTACTATTCGTTTCCAAATATGTACGTCTTCATTTGG
TTCCCCTTCTGGTTCAATTTCATCCGTTGATTTAGTAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063963-exon-scaffold_404-1491911889:90589..91670 | TCONS_00063963-exon-scaffold_404-1491911889:90589..91670 | Clytia hemisphaerica | exon |
| TCONS_00063963-exon-scaffold_404-1510915933:90589..91670 | TCONS_00063963-exon-scaffold_404-1510915933:90589..91670 | Clytia hemisphaerica | exon |
| TCONS_00063963-exon-scaffold_404-1575043694:90589..91670 | TCONS_00063963-exon-scaffold_404-1575043694:90589..91670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:90589..91670 . |
Blast
The following BLAST results are available for this feature:
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