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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063984 ID=TCONS_00063984|Name=TCONS_00063984|organism=Clytia hemisphaerica|type=transcript|length=2869bp
GGCAAATTACATATTTACACATCACGGAGGAGCTATTCCAGCTGATCAAT
AACAATCACATCAAGGTACAGCTGAGGGCAAAAATTCCTTATATTTGAAA
GAATAGttataaaatcatcaaatgatGCAATTCCTCATATAAATTGTACA
ATTTCGAGTGTATAGtatgtttttgagaaatattttgagaacatttttta
aGCCTCTAACCCTGTTCAGAATTTCTCCCTGTGAcgacttcaaaaattta
tttcactcaaagtttcatgcACCCAGAAAGCATCAGCTAATGGTCCAGGA
GCACTTTGTGTTAACTTGCTCATTTATAATAATAAATACTGTAAGTGGTT
TGGGATGTAAAAAAATAGAACATCAAAATGTCAGCCCTTTTTgctcatta
aaaataaattcaatctTAATGAAATTGAGATACGTATTACACAATCATTG
ATCATAATCTTAAGGTTTTGAGGAGAAAATCAAAGCAAGGCACTCGTTCG
TCTGGAAAACGAATCCAATTTTCTGTtattttgcaataaaatatcaaaaa
catatcaaaaacatATGCGAATCGCAGCAGCTGGATAGGAGAAATCAAAA
CTCCATAGGTTATCAAGTTAAAGACTTGTAAGACCAACAAAAATACAGAG
TGAAAACTACGTCAGCCACCCCTAAGTACGGAAGCCCATAAATGCCATTG
AGATTTTcctttaattttttaacgacgaaactaaaaaaattgacgagcaa
actaaaaaattgacgacaaaactgaaaataaattgttaCTTCGTTTCGTC
GTCGAAAAAATTAACAACGAAACTAAAAAAATGACGAGCAAACTAAAAAA
TTGACGACCAAACTAAAAAATTGACGAccaaactgaaaataaattgatac
TTCGCTTCGTCGTCGAAAAAATTGACAACGAAACTAAAAAAATGACgacg
aaactaaaaaattgacgaccaaactgaaaaattgacgacattgaaaatgg
tggccctggTGGTTGAGAAATGGAAATATCATTGATTATGGTGGATTCTG
AAGATGGATTTGATAGTTCTGTCGAATACAATGCTGGCGAAGATGGTTCT
TGTGAATAAAATAAGATGCTGGCAATGATGAATCTGAATAAGGATGTGAT
GGTTGAAGATTGTTGAAATCACAGGGGTGTCAATGGAATCATCGATGATT
TTCCAGGCTGTAAGGTCAAATCTACAGACCAGATTCAAGGTCATAAGTCA
TAATCCGATTACCCGAAAAAAACCAGCACTGTAAACCGGCAACTTTTTCG
ATTGGTTTGTAAGTTACAATCGAGTTCTGAGCCGACCCAATATCTTTTAA
ACTGACCATCAACTTTTAaactgaaatgaaattgtttgcAAAAAAGCGAA
TCGACTTTTAAACTGCCCAACCTTTTAAAATTGACCTAATCACATTTCAA
ACTGACCCAATCGTGCTTTAAACCAACCCAATCGAATTTAAAACTGatca
cctttcaaaccgacccTAACACTACTTTAGCCAACCTGATCACCTTTTAA
ACCAACCATAAAAGGGGTAGAGGTCATTATAAAGTGATTTTGGAgtagga
aaatcgaaaaaatggaagaaaaaaaccCTACAATTAAGCAACGAAGAGTA
ATCACACAAGCACCAGTAAATTCAGAAGAAGCCTAAAACCGCAACATTGG
CAAAAGAATCAGCCTTCATATCCACATTCGAAGGGaagagtccagtgaag
tagaaaAGTTGATACCAATTCTCAGTTCTCTAGCAAAGAATTTAGCAGAA
AGCAAGTCTGACAGTCAAAAACTGAACTTTGCAAAGAAGGAACATACAAG
AGAGATCCAAAAAGTGAAGCAGAGACTAAAAAGACTTGCATTCACAGACA
ATCGCCAACATGCAAAGACTTCAAAGGAAACAGACTCCTCAACGACGAAA
TGATTATTATGATTGCGGGAAACATGGCCAGTTTGCTAGGGATAGCAGAA
GTATCCACAACGACAGGCAAGGGACAAATAACCAACAATACCAAAATCAA
AGATGGCCTGGAATAACATCAGTTCAAGGACAAATACAGTTTCGACCTAT
GGGACAACAACCAACCAAGACttaaagtcaccaaaatttccCACCCTTCC
AGCACCAGCACGTTTCCgcaacagaaaatcaatcaacaTGATGCACAGCA
GGTAAAAGAATTTGCCGAAAGGAAAGCACCCCGTTCAAGAATCAACATTC
GAAATGCTGTAATCAACTACGTTACCGAAAAACTTTAACGTAACTAAAAA
CCCAGAAGAGGAATTCACGtattcgcaacttttatacatataatTTAGCC
AGTCATCAACAAAGTAGAATCCGTACACggaaaacccaaaaatatcaGCA
CTAGTCTCTTGTAAAATGTTCGATTCAATGAAGCAAACAATagacaaaaa
ctcaaaaatggctgaaaattcCAGCAAGTAGGTGTCAACATTTCGATGAT
GATGAATACAGGATAGCAAAGGACAGACTCATCAATTGATGGACCTTATG
ATCAATCCTCAGTACAACTGGCGTGAAAGATAAACACCTTTATGTGTTAT
GTCtaacatccaaaaaaaattatttccactTTTTGTTGTAATGTAATGCA
AAtgtaattatttcttttgttattttgttaaaataatatcttattaattt
cgcttagcgaaagtattacgatagcctttctgcggcggcggtgtcatcgg
aaaaaaaattagaaaacgaaagtactcgatacggtggacaaacctactaa
attttatttgttttcctcGGTCACACTCACCATGCATAAATATTGTggtc
gttttttttttgcaaaaag Run BLAST on NCBI transcript from alignment at scaffold_404:678703..681571 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063984 ID=TCONS_00063984|Name=TCONS_00063984|organism=Clytia hemisphaerica|type=transcript|length=2869bp|location=Sequence derived from alignment at scaffold_404:678703..681571 (Clytia hemisphaerica)
ctttttgcaaaaaaaaaacgaccACAATATTTATGCATGGTGAGTGTGAC
Cgaggaaaacaaataaaatttagtaggtttgtccaccgtatcgagtactt
tcgttttctaattttttttccgatgacaccgccgccgcagaaaggctatc
gtaatactttcgctaagcgaaattaataagatattattttaacaaaataa
caaaagaaataattacaTTTGCATTACATTACAACAAAAagtggaaataa
ttttttttggatgttaGACATAACACATAAAGGTGTTTATCTTTCACGCC
AGTTGTACTGAGGATTGATCATAAGGTCCATCAATTGATGAGTCTGTCCT
TTGCTATCCTGTATTCATCATCATCGAAATGTTGACACCTACTTGCTGga
attttcagccatttttgagtttttgtctATTGTTTGCTTCATTGAATCGA
ACATTTTACAAGAGACTAGTGCtgatatttttgggttttccGTGTACGGA
TTCTACTTTGTTGATGACTGGCTAAattatatgtataaaagttgcgaata
CGTGAATTCCTCTTCTGGGTTTTTAGTTACGTTAAAGTTTTTCGGTAACG
TAGTTGATTACAGCATTTCGAATGTTGATTCTTGAACGGGGTGCTTTCCT
TTCGGCAAATTCTTTTACCTGCTGTGCATCAtgttgattgattttctgtt
gcGGAAACGTGCTGGTGCTGGAAGGGTGggaaattttggtgactttaaGT
CTTGGTTGGTTGTTGTCCCATAGGTCGAAACTGTATTTGTCCTTGAACTG
ATGTTATTCCAGGCCATCTTTGATTTTGGTATTGTTGGTTATTTGTCCCT
TGCCTGTCGTTGTGGATACTTCTGCTATCCCTAGCAAACTGGCCATGTTT
CCCGCAATCATAATAATCATTTCGTCGTTGAGGAGTCTGTTTCCTTTGAA
GTCTTTGCATGTTGGCGATTGTCTGTGAATGCAAGTCTTTTTAGTCTCTG
CTTCACTTTTTGGATCTCTCTTGTATGTTCCTTCTTTGCAAAGTTCAGTT
TTTGACTGTCAGACTTGCTTTCTGCTAAATTCTTTGCTAGAGAACTGAGA
ATTGGTATCAACTtttctacttcactggactcttCCCTTCGAATGTGGAT
ATGAAGGCTGATTCTTTTGCCAATGTTGCGGTTTTAGGCTTCTTCTGAAT
TTACTGGTGCTTGTGTGATTACTCTTCGTTGCTTAATTGTAGggtttttt
tcttccattttttcgattttcctacTCCAAAATCACTTTATAATGACCTC
TACCCCTTTTATGGTTGGTTTAAAAGGTGATCAGGTTGGCTAAAGTAGTG
TTAgggtcggtttgaaaggtgatCAGTTTTAAATTCGATTGGGTTGGTTT
AAAGCACGATTGGGTCAGTTTGAAATGTGATTAGGTCAATTTTAAAAGGT
TGGGCAGTTTAAAAGTCGATTCGCTTTTTTgcaaacaatttcatttcagt
tTAAAAGTTGATGGTCAGTTTAAAAGATATTGGGTCGGCTCAGAACTCGA
TTGTAACTTACAAACCAATCGAAAAAGTTGCCGGTTTACAGTGCTGGTTT
TTTTCGGGTAATCGGATTATGACTTATGACCTTGAATCTGGTCTGTAGAT
TTGACCTTACAGCCTGGAAAATCATCGATGATTCCATTGACACCCCTGTG
ATTTCAACAATCTTCAACCATCACATCCTTATTCAGATTCATCATTGCCA
GCATCTTATTTTATTCACAAGAACCATCTTCGCCAGCATTGTATTCGACA
GAACTATCAAATCCATCTTCAGAATCCACCATAATCAATGATATTTCCAT
TTCTCAACCAccagggccaccattttcaatgtcgtcaatttttcagtttg
gtcgtcaattttttagtttcgtcGTCATTTTTTTAGTTTCGTTGTCAATT
TTTTCGACGACGAAGCGAAgtatcaatttattttcagtttggTCGTCAAT
TTTTTAGTTTGGTCGTCAATTTTTTAGTTTGCTCGTCATTTTTTTAGTTT
CGTTGTTAATTTTTTCGACGACGAAACGAAGtaacaatttattttcagtt
ttgtcgtcaattttttagtttgctcgtcaatttttttagtttcgtcgtta
aaaaattaaaggAAAATCTCAATGGCATTTATGGGCTTCCGTACTTAGGG
GTGGCTGACGTAGTTTTCACTCTGTATTTTTGTTGGTCTTACAAGTCTTT
AACTTGATAACCTATGGAGTTTTGATTTCTCCTATCCAGCTGCTGCGATT
CGCATatgtttttgatatgtttttgatattttattgcaaaataACAGAAA
ATTGGATTCGTTTTCCAGACGAACGAGTGCCTTGCTTTGATTTTCTCCTC
AAAACCTTAAGATTATGATCAATGATTGTGTAATACGTATCTCAATTTCA
TTAagattgaatttatttttaatgagcAAAAAGGGCTGACATTTTGATGT
TCTATTTTTTTACATCCCAAACCACTTACAGTATTTATTATTATAAATGA
GCAAGTTAACACAAAGTGCTCCTGGACCATTAGCTGATGCTTTCTGGGTg
catgaaactttgagtgaaataaatttttgaagtcgTCACAGGGAGAAATT
CTGAACAGGGTTAGAGGCttaaaaaatgttctcaaaatatttctcaaaaa
cataCTATACACTCGAAATTGTACAATTTATATGAGGAATTGCatcattt
gatgattttataaCTATTCTTTCAAATATAAGGAATTTTTGCCCTCAGCT
GTACCTTGATGTGATTGTTATTGATCAGCTGGAATAGCTCCTCCGTGATG
TGTAAATATGTAATTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063984-exon-scaffold_404-1491911889:678703..681571 | TCONS_00063984-exon-scaffold_404-1491911889:678703..681571 | Clytia hemisphaerica | exon |
| TCONS_00063984-exon-scaffold_404-1510915933:678703..681571 | TCONS_00063984-exon-scaffold_404-1510915933:678703..681571 | Clytia hemisphaerica | exon |
| TCONS_00063984-exon-scaffold_404-1575043694:678703..681571 | TCONS_00063984-exon-scaffold_404-1575043694:678703..681571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:678703..681571 . |
Blast
The following BLAST results are available for this feature:
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