TCONS_00063985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063985
Unique NameTCONS_00063985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063985 ID=TCONS_00063985|Name=TCONS_00063985|organism=Clytia hemisphaerica|type=transcript|length=781bp
AAAAACATGTGGTGACAAGAAGCAAGGAGAAAGACCGCTCAACCATGGAC
AAAACTTTAAACCCATACATAACCAACAGCACCGCCACTAAACTATATGG
ATATCTTCAGACAGATAAAAAAGAAGTGGTTTGGGTCAACAAGCGGTATA
TACCAACTGAACTCCGATCGACAGCTCCTGTACCACGCCACAAATTTCTt
aatgataaagaaaaaggtaaaGCGGCTGCAAGCGCCGACACAATTAAAGA
ATGGATGAAGCCAATTATATCTCCACCGATTACCGACTATCAGAGACCGT
CCAGCGAGGAACAATTCAGCCAATCTTCTCACGCTAACCAATGTCAAGAA
TGGTCTACTCTAAGACAAATGTTACCTTCAAAAGGCACCGTTTCGGCTAA
AGCGCCACCTCAGTGGGGTACAGGACAATCAGAACCAATTTCCTTTCGAA
TTCAGAGGAAATCTCgcttcccaaaaatcaatagcCCGATGACATCATAC
GTGGATGCTGCACACGTAACTAATCGATTGTTCACTTTTCAGTGACAGGG
TGACTCTTGTTAATCgctattttttacaaaaaagaactaattaaactaaa
aaaagaaaatccttGAAATTCATTAGCTATCATACAAAAGTTCTTAGGCC
AAGTGCAGTAAACTAACTAGGGAAATGTTTAGCGCACTTAATATCCACGG
TGTATTGTGGAATCTACCTTTATGGAATGTACAGAGACTGGCATCGACAG
GCGTGTATCGGATGGCAATCTCACTAAGTCG
Run BLAST on NCBI

protein sequence of TCONS_00063985-protein

>TCONS_00063985-protein ID=TCONS_00063985-protein|Name=TCONS_00063985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
KHVVTRSKEKDRSTMDKTLNPYITNSTATKLYGYLQTDKKEVVWVNKRYI
PTELRSTAPVPRHKFLNDKEKGKAAASADTIKEWMKPIISPPITDYQRPS
SEEQFSQSSHANQCQEWSTLRQMLPSKGTVSAKAPPQWGTGQSEPISFRI
QRKSRFPKINSPMTSYVDAAHVTNRLFTFQ
Run BLAST on NCBI

transcript from alignment at scaffold_404:706587..707367

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063985 ID=TCONS_00063985|Name=TCONS_00063985|organism=Clytia hemisphaerica|type=transcript|length=781bp|location=Sequence derived from alignment at scaffold_404:706587..707367 (Clytia hemisphaerica)
CGACTTAGTGAGATTGCCATCCGATACACGCCTGTCGATGCCAGTCTCTG
TACATTCCATAAAGGTAGATTCCACAATACACCGTGGATATTAAGTGCGC
TAAACATTTCCCTAGTTAGTTTACTGCACTTGGCCTAAGAACTTTTGTAT
GATAGCTAATGAATTTCaaggattttctttttttagtttaattagttctt
ttttgtaaaaaatagcGATTAACAAGAGTCACCCTGTCACTGAAAAGTGA
ACAATCGATTAGTTACGTGTGCAGCATCCACGTATGATGTCATCGGgcta
ttgatttttgggaagcGAGATTTCCTCTGAATTCGAAAGGAAATTGGTTC
TGATTGTCCTGTACCCCACTGAGGTGGCGCTTTAGCCGAAACGGTGCCTT
TTGAAGGTAACATTTGTCTTAGAGTAGACCATTCTTGACATTGGTTAGCG
TGAGAAGATTGGCTGAATTGTTCCTCGCTGGACGGTCTCTGATAGTCGGT
AATCGGTGGAGATATAATTGGCTTCATCCATTCTTTAATTGTGTCGGCGC
TTGCAGCCGCtttacctttttctttatcattaAGAAATTTGTGGCGTGGT
ACAGGAGCTGTCGATCGGAGTTCAGTTGGTATATACCGCTTGTTGACCCA
AACCACTTCTTTTTTATCTGTCTGAAGATATCCATATAGTTTAGTGGCGG
TGCTGTTGGTTATGTATGGGTTTAAAGTTTTGTCCATGGTTGAGCGGTCT
TTCTCCTTGCTTCTTGTCACCACATGTTTTT

Coding sequence (CDS) from alignment at scaffold_404:706587..707367

>TCONS_00063985 ID=TCONS_00063985|Name=TCONS_00063985|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_404:706587..707367 (Clytia hemisphaerica)
TCACTGAAAAGTGAACAATCGATTAGTTACGTGTGCAGCATCCACGTATG
ATGTCATCGGgctattgatttttgggaagcGAGATTTCCTCTGAATTCGA
AAGGAAATTGGTTCTGATTGTCCTGTACCCCACTGAGGTGGCGCTTTAGC
CGAAACGGTGCCTTTTGAAGGTAACATTTGTCTTAGAGTAGACCATTCTT
GACATTGGTTAGCGTGAGAAGATTGGCTGAATTGTTCCTCGCTGGACGGT
CTCTGATAGTCGGTAATCGGTGGAGATATAATTGGCTTCATCCATTCTTT
AATTGTGTCGGCGCTTGCAGCCGCtttacctttttctttatcattaAGAA
ATTTGTGGCGTGGTACAGGAGCTGTCGATCGGAGTTCAGTTGGTATATAC
CGCTTGTTGACCCAAACCACTTCTTTTTTATCTGTCTGAAGATATCCATA
TAGTTTAGTGGCGGTGCTGTTGGTTATGTATGGGTTTAAAGTTTTGTCCA
TGGTTGAGCGGTCTTTCTCCTTGCTTCTTGTCACCACATGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040110XLOC_040110Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063985-proteinTCONS_00063985-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063985-exon-scaffold_404-1491911889:706587..707367TCONS_00063985-exon-scaffold_404-1491911889:706587..707367Clytia hemisphaericaexon
TCONS_00063985-exon-scaffold_404-1510915933:706587..707367TCONS_00063985-exon-scaffold_404-1510915933:706587..707367Clytia hemisphaericaexon
TCONS_00063985-exon-scaffold_404-1575043694:706587..707367TCONS_00063985-exon-scaffold_404-1575043694:706587..707367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:706587..707367 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124048	0	0	0.137412	0	0	0	0	0	0	0	0	0.0412502	0	0.246535	1.13387	0	0.0954475	0	0	0	0	0	0	7.79132	7.13186	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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