TCONS_00064009 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064009
Unique NameTCONS_00064009
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064009 ID=TCONS_00064009|Name=TCONS_00064009|organism=Clytia hemisphaerica|type=transcript|length=712bp
ACGACTACTATATCATCGGGCGCCATATGTTATTACGCCGATTCTGGATT
TGAATCTGCGACTCCGGAAAGTTAGGGTTCTAAGAATAGTAGTCAGTACA
CGTGAGTTATCATAAGAtattctttatatttttcaagataATAATAATTG
TCGCTTACGAACAAACCAGAGTCACTTGCGAATTGTCTAATTCCAATTAA
GGTACATAGTCCAATATTAATTATTACCAATTCTGATAAATCCCAGTTAT
TAACAGTTCAATGTTTCTTTAAATCTTAGTTCAACTACTCCAGTAATGTT
AAAAGCTTTACTCTTGCACCGACCCAACAACGAACGTTCATTGTCCTAGC
ACTTAGCTTTTATAAGGAACGCCTTACGCTTCCTTGTAGTAAGTCGGGAT
CTGAGTTTATCAATAACGTAATGGTTTATCGTGGTTGATTTGAGTCTTCT
GAATTTGTCGATTGATGTGGAATTTGACGTTATTCATTATTAATGTGAGG
TGCTTTTAGATTAGGATGTTTGTTCAGTTCTGACGTATATGCTCTAACTG
GCGTGCACTTAGAGATGTGTTTTCGAAGCTTGTCTTTTGGTGTTGACTTC
GAGTGATTGGTGTTTAGCCACAAATTGTGAAATATGTGGTTTTGGCCATG
CTGGTATTTGCGTCATAAGTTTGGTTGTTTATTTAGGAAGAGTGAGAGTT
TCAGTCACGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_405:21243..21954

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064009 ID=TCONS_00064009|Name=TCONS_00064009|organism=Clytia hemisphaerica|type=transcript|length=712bp|location=Sequence derived from alignment at scaffold_405:21243..21954 (Clytia hemisphaerica)
ATTCGTGACTGAAACTCTCACTCTTCCTAAATAAACAACCAAACTTATGA
CGCAAATACCAGCATGGCCAAAACCACATATTTCACAATTTGTGGCTAAA
CACCAATCACTCGAAGTCAACACCAAAAGACAAGCTTCGAAAACACATCT
CTAAGTGCACGCCAGTTAGAGCATATACGTCAGAACTGAACAAACATCCT
AATCTAAAAGCACCTCACATTAATAATGAATAACGTCAAATTCCACATCA
ATCGACAAATTCAGAAGACTCAAATCAACCACGATAAACCATTACGTTAT
TGATAAACTCAGATCCCGACTTACTACAAGGAAGCGTAAGGCGTTCCTTA
TAAAAGCTAAGTGCTAGGACAATGAACGTTCGTTGTTGGGTCGGTGCAAG
AGTAAAGCTTTTAACATTACTGGAGTAGTTGAACTAAGATTTAAAGAAAC
ATTGAACTGTTAATAACTGGGATTTATCAGAATTGGTAATAATTAATATT
GGACTATGTACCTTAATTGGAATTAGACAATTCGCAAGTGACTCTGGTTT
GTTCGTAAGCGACAATTATTATtatcttgaaaaatataaagaataTCTTA
TGATAACTCACGTGTACTGACTACTATTCTTAGAACCCTAACTTTCCGGA
GTCGCAGATTCAAATCCAGAATCGGCGTAATAACATATGGCGCCCGATGA
TATAGTAGTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040134XLOC_040134Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064009-exon-scaffold_405-1491911889:21243..21954TCONS_00064009-exon-scaffold_405-1491911889:21243..21954Clytia hemisphaericaexon
TCONS_00064009-exon-scaffold_405-1510915933:21243..21954TCONS_00064009-exon-scaffold_405-1510915933:21243..21954Clytia hemisphaericaexon
TCONS_00064009-exon-scaffold_405-1575043694:21243..21954TCONS_00064009-exon-scaffold_405-1575043694:21243..21954Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_405supercontigscaffold_405:21243..21954 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.282129	0	0	0	0	0	0	0.177519	0.165623	0	0.285835	0.0469741	0.549872	0.203953	0.21125	0.394272	0.059653	0.595382	0.558869	1.05963	0.434229	0.210719	0.17239	0.147047	0	0	0	0.206431	0.0881984	0.159521
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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