TCONS_00064017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064017
Unique NameTCONS_00064017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length911

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064017 ID=TCONS_00064017|Name=TCONS_00064017|organism=Clytia hemisphaerica|type=transcript|length=911bp
GTTACTCGTAATGTCATTAGGTTTCGTggttattttaatattttgctACA
ATTGCTATTAATTACTTTAGCGGTCATCTTTGCGAAATCATATGGCGTAA
CCATCATGTTGGCAAGAACGTTGTAGCAGAACTACTAAATCAAATAGTTC
AAATCTATGATGTGGAAGAAATGGTCACCAAATTCACGTATGAAAACACG
TTTAAAGATTTGTTTCAAGACATAGATGATGACAACGAATCTTTGTATAT
GTTCGTCGACAACGAAGAATACTTGAAGGTAAATAAAGTTTGAATTCTTT
AATACTGTAATTGGTTTGTTCTGTTCCAAGGAATTTGTAGTGGATATTAT
TTCTTGTGTTTGCAGAATATCGATGTTACCGCGCTGGTTAACTCGAACAT
TGAGCCCGAAGCACCTCACTTAGAAACACCACCGATTGCAACCCATGATG
TAAGTTTCAATACGTTGAATGCGCAAACTTCTTCCAGCAACGGAAACTTG
AGCCCCCCAGTCGTGAATTTACAACGCACGAAAAAGACATCTAACCATAG
TGACGAGACTGTGCCGTACAACTATGCCACGTTGTTTGACTTGGTGGAGG
GAAATAAAAGTTCCAAAACAGCAAGCTCTgagagaggaaaagaaaaggct
acgtcttcaaaaatcaacaacaacGATGAAATGAATGATCAAGAAGGTTC
GCAATTGGTTGACATAGTCATCGAAAAGCCAAAAGGAGTAACCACAATCA
CTACAAATGCAAAAGGAAAgGCCATCGTTACTTACCGCAAAGGCAACATA
AGCGTAGATCAAAAACCATCGAGTGCGCAGGTAGAAGACATCTCTGATTC
GGTCATTGAGCAACCAGCCATGGAATCCAAGAAAGCACCAAGTAAAAATG
GAAAAGAGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_406:42652..43913-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064017 ID=TCONS_00064017|Name=TCONS_00064017|organism=Clytia hemisphaerica|type=transcript|length=1262bp|location=Sequence derived from alignment at scaffold_406:42652..43913- (Clytia hemisphaerica)
GTTACTCGTAATGTCATTAGGTTTCGTGGTTATTTTAATATTTTGCTACA
ATTGCTATTAATTACTTTAGCGGTCATCTTTGCGAAATCATATGGCGTAA
CCATCATGTTGGCAAGAACGTTGTAGCAGAACTACTAAATCAAATAGTTC
AAATCTATGATGTGGAAGAAATGGTCACCAAATTCACGTATGAAAACACG
TTTAAAGATTTGTTTCAAGACATAGATGATGACAACGAATCTTTGTATAT
GTTCGTCGACAACGAAGAATACTTGAAGGTAAATAAAGTTTGAATTCTTT
AATACTGTAATTGGTTTGTTCTGTTCCAAGGAATTTGTAGTGGATATTAT
TTCTTGTGTTTGCAGAATATCGATGTTACCGCGCTGGTTAACTCGAACAT
TGAGCCCGAAGCACCTCACTTAGAAACACCACCGATTGCAACCCATGATG
TAAGTTTCAATACGTTGAATGCGCAAACTTCTTCCAGCAACGGAAACTTG
AGCCCCCCAGTCGTGAATTTACAACGCACGAAAAAGACATCTAACCATAG
TGACGAGACTGTGCCGTACAACTATGCCACGTTGTTTGACTTGGTGGAGG
GAAATAAAAGTTCCAAAACAGCAAGCTCTGAGAGAGGAAAAGAAAAGGTA
ATGATTTATTAAAAGTAAAGGAATATTGCCGTTCATGTTGTGTGTGTCCA
ACTTCAGAATACTATTTTCCATTGAATATTGTGATGATCTAAGTTATATT
GAAAACAAAGAAACTATTTGTGATAAGGTCAATAATTTGTGATAATGGGC
AAGTTATTCATTGCTTTTTATAAAAAACTCATTTTTACTCACTCTTTCAG
GCTACGTCTTCAAAAATCAACAACAACGATGAAATGAATGATCAAGAAGG
TTCGCAATTGGTTGACATAGTCATCGAAAAGCCAAAAGGAGTAACCACAA
TCACTACAAATGCAAAAGGAAAGGTAACAAAAATAAATTTTACAGTCAAT
CATGAAAAATGTAGCTAGAACTAATGAAATCTAGCAAATTTATAAATACA
TTTTTAAATTGTAAAATGAAATGCTTATAATTATTATTATGAGACAAGAT
TTTTTCAAAATACCATCATAGGCCATCGTTACTTACCGCAAAGGCAACAT
AAGCGTAGATCAAAAACCATCGAGTGCGCAGGTAGAAGACATCTCTGATT
CGGTCATTGAGCAACCAGCCATGGAATCCAAGAAAGCACCAAGTAAAAAT
GGAAAAGAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040141XLOC_040141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064017-exon-scaffold_406-1575043694:43267..43913TCONS_00064017-exon-scaffold_406-1575043694:43267..43913Clytia hemisphaericaexon
TCONS_00064017-exon-scaffold_406-1575043694:42941..43063TCONS_00064017-exon-scaffold_406-1575043694:42941..43063Clytia hemisphaericaexon
TCONS_00064017-exon-scaffold_406-1575043694:42652..42792TCONS_00064017-exon-scaffold_406-1575043694:42652..42792Clytia hemisphaericaexon
TCONS_00064017-exon-scaffold_406-1510915933:43267..43913TCONS_00064017-exon-scaffold_406-1510915933:43267..43913Clytia hemisphaericaexon
TCONS_00064017-exon-scaffold_406-1510915933:42941..43063TCONS_00064017-exon-scaffold_406-1510915933:42941..43063Clytia hemisphaericaexon
TCONS_00064017-exon-scaffold_406-1510915933:42652..42792TCONS_00064017-exon-scaffold_406-1510915933:42652..42792Clytia hemisphaericaexon
TCONS_00064017-exon-scaffold_406-1491911889:43267..43913TCONS_00064017-exon-scaffold_406-1491911889:43267..43913Clytia hemisphaericaexon
TCONS_00064017-exon-scaffold_406-1491911889:42941..43063TCONS_00064017-exon-scaffold_406-1491911889:42941..43063Clytia hemisphaericaexon
TCONS_00064017-exon-scaffold_406-1491911889:42652..42792TCONS_00064017-exon-scaffold_406-1491911889:42652..42792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_406supercontigscaffold_406:42652..43913 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0572218	0	0	0	0.129949	0.154084	0	0	0	0	0.215588	0.451813	0.0829265	0.102507	0	0.0595779	0	0	0	0	0.057946	0.0526813	2.03364	1.45464	0	0	0.0560933	0.0571502
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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