|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064021 ID=TCONS_00064021|Name=TCONS_00064021|organism=Clytia hemisphaerica|type=transcript|length=7112bpRun BLAST on NCBI protein sequence of TCONS_00064021-protein >TCONS_00064021-protein ID=TCONS_00064021-protein|Name=TCONS_00064021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1551bp MDMLNVLLKLHHDLLRMLNSEHHLIIFGLIAYFLRYTCANNCYDFSNKPRRun BLAST on NCBI transcript from alignment at scaffold_407:14125..27783+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064021 ID=TCONS_00064021|Name=TCONS_00064021|organism=Clytia hemisphaerica|type=transcript|length=13659bp|location=Sequence derived from alignment at scaffold_407:14125..27783+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_407:14125..27783+ >TCONS_00064021 ID=TCONS_00064021|Name=TCONS_00064021|organism=Clytia hemisphaerica|type=CDS|length=69840bp|location=Sequence derived from alignment at scaffold_407:14125..27783+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00064021 vs. Swiss-Prot (Human)
Match: LAMB2 (Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2) HSP 1 Score: 350.517 bits (898), Expect = 3.061e-97 Identity = 269/909 (29.59%), Postives = 398/909 (43.78%), Query Frame = 3
Query: 486 IVASNTCGTPTAEGFC---YIGPQKNCEICNAAVPQLA------HPAELMVDRFMLNNGVTWWQSMTWWTSNQLDLSKLFVPLKVNITLDLKKMYLISGGIYVTFKTERPKQMIIEKSRDFGKTWQVYQYFAKNCRSMYNLQPDPSINGNXQYFAKNCRSMYNLQPDPSIDGNSPFKDTCSELYSGEFPRSGGVVHFDPRLRYQPQDYYHADVHRYLEATNIRLRLEYPGTDGREYINEETTLNQ-YYYAISDLRVDARCDCNGHGEFCDIGSDGQE--------KCDCHHFTQGVDCGECKPLYRNRLWMAGNATNANPCQKCECFGHATACTY-------SAFLNQGMCSNCQDNTRGIRCDQCVERFYRNISVTLNDPKVCIPCDCYAPGIMDDGKC--LQSATMNQVLGQCTCKPGIYGRRCDECIPGKWGFANPPIGTCFDCSCNIFGTINRNQICDQNSGQCTCKVSTTGRVCDSCKDGYYKFPTSLSNECELCPCNEGGA-HPSCNKLTGICQCRIGVMGAQCDLIKPGYFFPNFTYLKFEPEFSNANGSFSWYYLVR-NYAKYFTGFGYAKLEAGQEISFDIM-VAVETKYFMLLRYSLYQLEWFSQILPQGREISDWSGGTDKDFYLKSSDQPMQWL-FSVTIYDSGGQLAHA---HTFTVQDLTIG----NAQFMLSKTSFELKANVKYT--LRIVYEDSSKSYGQPWP---LLLDSVSFMLDYTVSQYFQG-----LTISKKLEVFNCFSGSKDLSTTYNLPN-ACEVPTFTIDLQIYKKALTCNCFTAGSHLWNTCDQYGGQCQCREGYGDRACDQCLPGYYGDPGVGCLKCACSTVGSLSLACNRQSGQCTCKENAHGLKCDECLLGYYYLSETNPKGCLECFGYGHLSSCSSAVG 3065
+ AS+TCG + +C ++ +K C +C++ P A H + +V F WWQS + V I LDL+ + + + +TFKT RP M++E+S DFG+TW VY+YF+ +C + + P + + C S Y+ + +PS +G ++ DP + D Y + + L+ TN+R+ L T G ++ + + YYYA+ +L V C C GH C C C H T+G++C +C+ YR+ W +++ C+KCEC GH +C + S ++ G+C CQ NT G C+ C FYR+ + L DP VC CDC G D G+C + V GQC CK + G RC +C G +G + C C CN GT+ + CD NSG C CK TGR CD C G++ L C C C+ GGA P C++ TG C CR ++G +C+ ++PGYF P +L +E E + LV +TG G+ +L+ GQ + F + V Y +LLR + PQ P QW + + G AH+ H D G +A++++ L+ + Y L++V S P+ LL+DS+ + V + F G L E + C + L + P+ AC ++ IY AL C C GS L + C+ +GGQC C+ G R CD C PGYYG GC C CS G+LS C + SGQC C+ A GL+CD C G + P C GH C++ G
Sbjct: 62 LTASSTCGLNGPQPYCIVSHLQDEKKCFLCDSRRPFSARDNPHSHRIQNVVTSFAPQRRAAWWQSENGIPA-------------VTIQLDLEAEFHFTH-LIMTFKTFRPAAMLVERSADFGRTWHVYRYFSYDCGADF---PGVPLAPPRHWDDVVCESRYS-EIEPSTEGEVIYRV------------------LDPAIPIP--DPYSSRIQNLLKITNLRVNLTRLHTLGDNLLDPRREIREKYYYALYELVVRGNCFCYGHASECAPAPGAPAHAEGMVHGACICKHNTRGLNCEQCQDFYRDLPWRPAEDGHSHACRKCECHGHTHSCHFDMAVYLASGNVSGGVCDGCQHNTAGRHCELCRPFFYRDPTKDLRDPAVCRSCDCDPMGSQDGGRCDSHDDPALGLVSGQCRCKEHVVGTRCQQCRDGFFGLSISDRLGCRRCQCNARGTVPGSTPCDPNSGSCYCKRLVTGRGCDRCLPGHWGLSHDLLG-CRPCDCDVGGALDPQCDEGTGQCHCRQHMVGRRCEQVQPGYFRPFLDHLIWEAEDTRGQVLDVVERLVTPGETPSWTGSGFVRLQEGQTLEFLVASVPKAMDYDLLLR-----------LEPQ---------------------VPEQWAELELIVQRPGPVPAHSLCGHLVPKDDRIQGTLQPHARYLIFPNPVCLEPGISYKLHLKLVRTGGSAQPETPYSGPGLLIDSLVLLPRVLVLEMFSGGDAAALERQATFERYQCH--EEGLVPSKTSPSEACAPLLISLSTLIYNGALPCQCNPQGS-LSSECNPHGGQCLCKPGVVGRRCDLCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCLCRTGAFGLRCDRCQRGQWGFPSCRP-----CVCNGHADECNTHTG 891 HSP 2 Score: 89.3521 bits (220), Expect = 2.275e-17 Identity = 69/226 (30.53%), Postives = 96/226 (42.48%), Query Frame = 3
Query: 1392 CQKCECFGHATACTYSAFLNQGMCSNCQDNTRGIRCDQCVERFYRNISVTLNDPKV-----CIPCDC-YAPGIMDD--GKCLQSATMNQVLGQCTCKPGIYGRRCDECIPGKWGFANPPIGTCFDCSCNIFGTINRNQICDQNSGQC-TCKVSTTGRVCDSCKDGYYKFPTSLSNECELCPCNEGGAHPS---------CNKLTGICQCRIGVMGAQCDLIKPGYF 2015
C+ C C GHA C + G C C+D+T G C++C+ F+ DP++ C PC C PG C Q Q++ C C+ G G RC+ C PG +G + P G C C C+ CD ++GQC C T G C CK G++ + C C CN G +P C+ +G C C V G CD P ++
Sbjct: 874 CRPCVCNGHADECN----THTGACLGCRDHTGGEHCERCIAGFH-------GDPRLPYGGQCRPCPCPEGPGSQRHFATSCHQDEYSQQIV--CHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLCECSGNIDPMDPDACDPHTGQCLRCLHHTEGPHCAHCKPGFHG--QAARQSCHRCTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFW 1084 HSP 3 Score: 88.1965 bits (217), Expect = 5.506e-17 Identity = 59/159 (37.11%), Postives = 76/159 (47.80%), Query Frame = 3
Query: 1563 IPCDCYAPGIMDDGKCLQSATMNQVLGQCTCKPGIYGRRCDECIPGKWGFANPPIGTCFDCSCNIFGTINRNQICDQNSGQCTCKVSTTGRVCDSCKDGYYKFPTSLSNECELCPCNEGGAHPSCNKLTGIC-QCRIGVMGAQCDLIKPGYFF-PNFTY 2033
+PC C G + S+ N GQC CKPG+ GRRCD C PG +GF P G C C C+ G + + +C++ SGQC C+ G CD C+ G + FP+ C C CN G CN TG C CR G C+ G+ P Y
Sbjct: 781 LPCQCNPQGSL-------SSECNPHGGQCLCKPGVVGRRCDLCAPGYYGFG--PTG-CQACQCSHEGAL--SSLCEKTSGQCLCRTGAFGLRCDRCQRGQWGFPS-----CRPCVCN--GHADECNTHTGACLGCRDHTGGEHCERCIAGFHGDPRLPY 920 The following BLAST results are available for this feature:
BLAST of TCONS_00064021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.