|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064077 ID=TCONS_00064077|Name=TCONS_00064077|organism=Clytia hemisphaerica|type=transcript|length=1161bp
ATTTTTACTAATTCAACCCTTGATTTGCTTAGAGTTCAGTCATTTCAGGC
ATTGTACTTTAATCGTTCTTTTTAATGTTCATTTGTCttgacatttttct
tataaaaatgagtGCAGCTCTCTCGTTATTTTGTCTTTGGGGAAACTGTG
AAATGATATTAAGTCCGAGTTAAGAGTCTGATTAACTCCGGATAAACTTT
GGAAGTATTTCATTGCTGTGATTTAATCAATTCCAACTATTTCATGCAGT
CCTAACAAAGAGGGGAATTAAATCATCATTCTTTACTGGATGGAGACTAT
GGTTCCAAAAAAAGAGCAATTAAATAATCAGCCAGCAGTTGCTTATTGGT
GATATTGtattattttattgtttataggggCGAAAAGCATTAAGCTCTGG
ACTTGGTTTGACAACGTACAAATTGGAAATACCGTGTGATAATAGTGTAG
ATGTTAATTTCAATATCAGAAATGAAATCAAAAGTCTGCGGATAAAAGAT
CTGAAAGAATACATCATGAATTCAAGAGGGGATTCAAGTGTTATAGAAat
ccatattcaaattttcgtTCAATTTTTGAACGAGTTTAACACGATATCAT
TTCAAGAAACGAATAAAACATTAAAGAAAGATCTGGTTCACATTCGGAAT
ATCTTATTGATGGATATGCAGTTCttggaaaattataaaaagAAACTTGT
CTACTGTCATCATGTCAACATTTCATCCCTCGATCTCAAGAAAGAACGTT
TGATACATCGATTCCACGACGACACATTCTTCAACTCTATGAAACCAACC
TCCACTAATATACATGATACATCTTTCAAAATCTATGGCATTTTACAACA
GTTTCTGAACTATCACAAATGGCTCAGAGTTGATTTATTCCATCGTGTTG
TATGCATGCCCATACCTAGTGCCCAGTGCCCAGACATTCTTTTAAATATG
AGGAATAAAAGCAAGAACAAACACCAAGGCACTACAGACCCGAAAGTCAA
AAACCAAATTATACTTCAGTAACATTACGAGAGCACAAACATCACATAGC
AGCACACTATTTGAGATTATTATCTAAGTTCATTTTGACAAGGGACTATT
AGACCCTTTGACAGGTCAATTTGCTAGTTCAATGCATGTTTTTGAGTCTT
TTAGCCAAAAA Run BLAST on NCBI transcript from alignment at scaffold_407:301959..305700- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064077 ID=TCONS_00064077|Name=TCONS_00064077|organism=Clytia hemisphaerica|type=transcript|length=3742bp|location=Sequence derived from alignment at scaffold_407:301959..305700- (Clytia hemisphaerica)
ATTTTTACTAATTCAACCCTTGATTTGCTTAGAGTTCAGTCATTTCAGGC
ATTGTACTTTAATCGTTCTTTTTAATGTTCATTTGTCTTGACATTTTTCT
TATAAAAATGAGTGCAGCTCTCTCGTTATTTTGTCTTTGGGGAAACTGTG
AAATGATATTAAGTCCGAGTTAAGAGTCTGATTAACTCCGGATAAACTTT
GGAAGTATTTCATTGCTGTGATTTAATCAATTCCAACTATTTCATGCAGT
CCTAACAAAGAGGGGAATTAAATCATCATTCTTTACTGGATGGAGACTAT
GGTTCCAAAAAAAGAGCAATTAAATAATCAGCCAGCAGTTGCTTATTGGT
GATATTGTATTATTTTATTGTTTATAGGGGCGAAAAGCATTAAGCTCTGG
ACTTGGTTTGACAACGTACAAATTGGAAATACCGTGTGATAATAGTGTAG
ATGTTAATTTCAATATCAGAAATGAAATCAAAAGTCTGCGGATAAAAGAT
CTGAAAGAATACATCATGAATTCAAGAGGGGTAAGCGTCCAAAAAAACGT
CTACAAAACGTCCTAAAACGTTCATCTAACGTCCAAATGTCGTCCAAATG
TCGCTGTATATAGCAAATGAGACAGTAGTAATTCAACCCTATAGTACCTT
GGACCTTCGACACCCTATAGTATGTGTTACATAAGGGACATATATAAGAG
CTGATTTGAAAAAAAAAACTAAATTAAACTAAATTTGACGATTTTCTTTC
AATTTTTGATTACATTCTTATACCCTTTAAGGCTTAAAATCAGCCTTTTG
ATCTAATTTGGTCCACTTTTGCTAAAGATTTTAGCTCAAAGGCTTAATTA
CTTCTTATGAGACCTCAAATGAAAAACAAACCACAAACTTTGAATGTCCA
CATACGTAAACGCCGAGTATTATAGGGTTTAAACCATAAAAGTATATTTC
AGAACCTTGAAAAGCCGCGTGAAGAAATTTGACTGTTAAATCAAAGTTTT
TCTCACGATCCTTTGTTCGATTCCTAGTACCTCCTCTGAGAGCACTACTG
TCTGAGAATTGATCTGATTTAGGAATAATTGTGCTAAAAAGGCCTGAAGT
GTTTTAAGTATGAATATTTGCATATATTGTAAACTTCAAAGGCTATGATG
TACCTTAACCATTTTTCTATCCTTTATTTCCTAGGATTCAAGTGTTATAG
AAATCCATATTCAAATTTTCGTTCAATTTTTGAACGAGTTTAACACGATA
TCATTTCAAGAAACGAATAAAACATTAAAGAAAGATCTGGTTCACATTCG
GAATATCTTATTGATGGATATGCAGTTCTTGGAAAATTATAAAAAGGTTA
GTACAAAGTGAATTCGAAATTATACTAAAGAACCAATACTCAGTCCCTGC
TAATCCTTATCTAAAATACTTTTTTAATTGAAATTTCTCCGTTATTCGAA
CAAATTTAGCATCCCGTTCGAGTTAGCAAGATATATTTAAGTTTTTAGAT
CGAACTCTAATAATCTGCAATCAATTGTTATGATACACGTTTTTTTATAA
GAACAAAGTAAACTATACAAGAACACAATGATTGGATGTTAAGCACAAGT
TAAGAACATTTTAAGGCTTTATGGACACTGAAACACCCCTACTTCTTAGG
AAAATGGACAAAAATGTTCACAAAATAATGAAAATAAGAGCATGTCAAGA
ACATTTTTAGGCTTAAAACTCAAAAAGTAAAGAACATCAAAAAGCTTCAA
AATTTTTGAATGGTCTTATACAAAAAAGGTGTAGCGTTGATTTCTTGGGT
GCAAAGTGTCTTATGAAGTGAATTTTATATCAAACGATTTCCTAGGAGCA
TGATTACCCAAAAAAAAACTAAAAACAAAACAATAATACCACAGTTATGT
TGACACCTCTGCAAAGCCATTGACCAAAATTTGAAACTTCCCACTTTCTA
AAAGTGGTTTGACATATTTTCGAAAGAAACAGTTTACACCAAAGTTGACA
CATAGTTTAGCATTTTCTGTTCAGTAAACAAGCTAAATCACAAAAACCAA
AGTTGGAAGGTATACAAGGAGACCCACGCTTTAAAGGATCATTATCCATC
AAATTAGGGAAATGAAAATGAGGTTTCTATTTAATTGGATGGTATTTTTC
TTTACTAGACAGTATCCATCACTAATCCCCAATTGAAGCAATTGATACTT
TCAGCGGGACTTTGAGTTATACCCAGCTGGCACNGCTAATCCCCAATTGA
AGCGATTGATACTTTCAGCGGGACTTTGAGTTATACCCAGCTGGCACACA
ACGTTGTTTCAACGTTTATTTAACGTTCACAACGTCCACATAACGCTAGA
TGAACGTTGAAACAACGTTGTGTGCCAGCTGGGTATACAACAGGGTCTTC
GTGATGTCATGATAGTGTTGGTAGAAATCTTCAAATATTAGGGTCATTTT
TGAAGACACCTTTTAGAATATTTTTCAAAAATTATTTCTGCAAATTCATT
GCATTTTAAAATGGCGAGGAAGAAACTAGTTGTTGAATAGAGGTGAAAAG
GTCAAAGTTCTTTTTCTTCCTACAAGAAATAATTTTTACAAGGAGACATA
AAAAGATTTCTTACTTTAAATGTAACGATCGATAGAAAGTTTTTTTATGA
CTGTGACGCATTTTGGACCACAAAAAGCTATAGAAATAGAGTCGTTACAC
TAGTTTCATTTCTCTCCTCGTAGGCGTCCGAAGTTTCCTTTTCAAGTATA
CCACAAATTAAAACATACAACAAAATGCCCATGTCTATTTTCCTAAACAA
ACTTATCTACAAAAACAAAAATATTATTCGAACTCATAAATTTATCCCTT
CTTAGTTCCTAATATGCGGCAAAGTACGTCAACGCGAAGCCATGGGTCCA
AATAATACTTGACCATGGACGTTGAAAAGACGATCTGTGACATATCTTTA
ATATCTTTAATCAGAACTCAATGTAGAAAATATAAATTAGACAAAAATAG
AGAAGTAGGTCTTTGGTACAGATATGGTTTCATGGCCAGAATTATCATTC
TATTTCTCCAAATAAAATTGTATTTTGAGTGCATTTTCAGGCCATCTTCA
AAATCCCCCTACCCCATGGGCAAAACATTAGTTTCAAGTTCATATCGAAA
TGCTTCCTACGGCACTGGAGTTAATGCATTGACTTCAGACATTTTACTCT
ATTACTAAGTTTACTCAAGCTTTAAGGGCTGAAAAAGTATATTTTAATCA
GCATCCAATTTTTCCTGATTTAGAAACTTGTCTACTGTCATCATGTCAAC
ATTTCATCCCTCGATCTCAAGAAAGAACGTTTGATACATCGATTCCACGA
CGACACATTCTTCAACTCTATGAAACCAACCTCCACTAATATACATGATA
CATCTTTCAAAATCTATGGCATTTTACAACAGTTTCTGAACTATCACAAA
TGGCTCAGAGTTGATTTATTCCATCGTGTTGTATGCATGCCCATACCTAG
TGCCCAGTGCCCAGACATTCTTTTAAATATGAGGAATAAAAGCAAGAACA
AACACCAAGGCACTACAGACCCGAAAGTCAAAAACCAAATTATACTTCAG
TAACATTACGAGAGCACAAACATCACATAGCAGCACACTATTTGAGATTA
TTATCTAAGTTCATTTTGACAAGGGACTATTAGACCCTTTGACAGGTCAA
TTTGCTAGTTCAATGCATGTTTTTGAGTCTTTTAGCCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064077-exon-scaffold_407-1575043694:305171..305700 | TCONS_00064077-exon-scaffold_407-1575043694:305171..305700 | Clytia hemisphaerica | exon |
| TCONS_00064077-exon-scaffold_407-1575043694:304355..304516 | TCONS_00064077-exon-scaffold_407-1575043694:304355..304516 | Clytia hemisphaerica | exon |
| TCONS_00064077-exon-scaffold_407-1575043694:301959..302427 | TCONS_00064077-exon-scaffold_407-1575043694:301959..302427 | Clytia hemisphaerica | exon |
| TCONS_00064077-exon-scaffold_407-1510915933:305171..305700 | TCONS_00064077-exon-scaffold_407-1510915933:305171..305700 | Clytia hemisphaerica | exon |
| TCONS_00064077-exon-scaffold_407-1510915933:304355..304516 | TCONS_00064077-exon-scaffold_407-1510915933:304355..304516 | Clytia hemisphaerica | exon |
| TCONS_00064077-exon-scaffold_407-1510915933:301959..302427 | TCONS_00064077-exon-scaffold_407-1510915933:301959..302427 | Clytia hemisphaerica | exon |
| TCONS_00064077-exon-scaffold_407-1491911889:305171..305700 | TCONS_00064077-exon-scaffold_407-1491911889:305171..305700 | Clytia hemisphaerica | exon |
| TCONS_00064077-exon-scaffold_407-1491911889:304355..304516 | TCONS_00064077-exon-scaffold_407-1491911889:304355..304516 | Clytia hemisphaerica | exon |
| TCONS_00064077-exon-scaffold_407-1491911889:301959..302427 | TCONS_00064077-exon-scaffold_407-1491911889:301959..302427 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:301959..305700 - |
Blast
The following BLAST results are available for this feature:
|
