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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064080 ID=TCONS_00064080|Name=TCONS_00064080|organism=Clytia hemisphaerica|type=transcript|length=1601bp TTTGAATTTACATTTTAGaatttaggaaattttaaataaaGGATGTTGCA TTTGCAAAGGCGATTTGTCACCTCAAGAACGACATGTATACCGAGCCTTA AAAAGACATTCACTAAAGCCCTATCTACACGTACAGAGTTTACGCATCGA ACTGAAGAGAATGTGATTCGTGGAAATAAATCCTTGGAATATCCAGTCGA AGattgcttcacttttttcagCAAACGTTTTGAACAATTTGGCGAGCGCG TTGCTATGATCGGTCGTATATGTATCGCACCACCTATCCTGCTGTTTCTC ACTAAAAGCCCGTTGGTTGATCAGTATGACATGTCCAGTCTCAAGTCTAT TATCGTTGGAGCAGCGCCTGTTGATGAACAACTTTCACATGCTTTTAATG AAAGGTTCCCTTGGATAACCTTGCAGCAATGTTATGGGATGACAGAAGCT GGTTTCGCCACGCTCCAGGCTAATGATGCTTCATTTAACAGTGCAGGATC AGTAGGTCAAATCTTGGCTGACGGTGAATGCAAGaTAGTATCTCTAACGA CAGGCGAATTTTTGGGTCCATATGAACAAGGTGAAGTCTACCTGAGAGGA GCACAGCAGATGTTAGGTTATTTAAACAACGAGAAGGCAACAACAGAAAC CATTTTGGAAGACGGTTGGCTACGCTCTGGTGATTTAGGTTACTATGACG ACGAGAATAATTTATTTGTCATCGACCGTTTGAAAGAGTTGATCAAATAT AAAGGTTTCCAGGTTGCACCTGCCGAGCTGGAAGATTTATTGATTTCTCA CGAAAACATTGTGGATAGTTGCGTGATTGGCGTCCCATGCGAAAGAGCTG GAGAAGTACCACGCGCCTATATCGTCAAAAAGCCTGGTAGTGATTTAACA GAAGATGAAGTGAAAGATTTTGTAGGTGAACGATTTTCTGATCATAAACA TCTCCGTGGTGGAGTACAATTCGTAGAACAATTACCGAAATCGGCATCAG GAAAACTCCTTCGTAGAGTGCTCAGAGATCAATATTTGGAGGAGAGGGAG TGAATTAGATGattatttatgaaatatttttcagggAATTTTTGAATGCT GtgaaattttaagggaaaatttcaaaaacgaCATATCAAACCAACTTGGC GGTTGCTTAAGCGAAATGGAGTACGGGGACGTAAATTCCGGGTTTACCTT AGGACATCCTTACTAGTTTTCAGGGTGGGTTACGCCTTTCAGGGCCCAAA TTTGGTTCCCATTTCGTTTAAATTTTGTCTGACATAGTCCATATTTTGAA CATAAGCGGCACGCCCTCACCGACCGCAGTACCTCCCTCCCCAGTTGTGG TGACTAACGATATTTCCCCATGtattaaacttttaaaattctcgttgtta tatatattttttgttaatGTATATACGATAGAATATGTATTTTAAAGCAT AGTGAGTACAAAGTATTGGttaaactgttttaaattttctcatcTGACCA ATGAGAATTCGTTATTATATACGTCCTGATgcattacccatgattcatct GGAACAAGTGATTGCCTATGGATAATGCAAGAAAACAAAATAACCCAATC A Run BLAST on NCBI transcript from alignment at scaffold_407:349283..355695- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064080 ID=TCONS_00064080|Name=TCONS_00064080|organism=Clytia hemisphaerica|type=transcript|length=6413bp|location=Sequence derived from alignment at scaffold_407:349283..355695- (Clytia hemisphaerica) TTTGAATTTACATTTTAGAATTTAGGAAATTTTAAATAAAGGATGTTGCA
TTTGCAAAGGCGATTTGTCACCTCAAGAACGACATGTATACCGAGCCTTA
AAAAGACATTCACTAAAGCCCTATCTACACGTACAGAGTTTACGCATCGA
ACTGAAGAGAATGTGATTCGTGGAAATAAATCCTTGGAATATCCAGTCGA
AGATTGCTTCACTTTTTTCAGCAAACGTTTTGAACAATTTGGCGAGCGCG
TTGCTATGGTAAGAGACGTGTTTGTTTTGATTTATTTGCAGACTCGGAAT
TTTTTCAGTGTATGTTTAGGGTAATTTGATGACCGTGTTGCGATGGTAAG
AAACTTTTTCATTGATTAGTTTTTGGCAGACTCGAAAAAGTTATTGATTA
TACTGTATTAAGTATTGGTAAATTTGATCCTCTTAATTTTTTCTAAGCAA
ATTTTGTCATCGGTGCAAATCAAAAGTTTTCTTCGGGAGGAATGATATCG
CAGATGAACGACCAGTGCACCCCTTTAAAAAGAGTTCCAAACGGCATGGT
TGAGCCTCGTCTTGATGAAGAAAATTATATTTTTTGTCATTTTCAGGTTG
ATGGTGTAACAGGTGTTGAATTAATTTTTTCTCAACTAGTTCAGAATTCT
CGAAAACTGGGTTCGTATTTTCATGAAAAGAATTTCAAATTGAGAGATCG
GGTTTCAATTTTTCTTCCAACGTGTACGGAATACTCTTACTCTATGCTTG
GGGCGTTTGCAAACGGCATGGCGGTCACAACTATACACCCCACCTTCACC
GCCCATGAGATGCATAATCAAATCAAAACATCAACGCCCAAAGTTGTGAT
CACAAATGCACATTTATTAGATACCGCCCGTCAAGCTTCAGAAAACAGTT
CCATAGAAACAATAATATGTTTAGACGATACGTCAATCTCCGACAGCGGC
GTCGTCAACATGTCGGATATCTTACAAAACGGCGACGAAAATTTCTCAGC
TGATCTGTCAGCTATCGATCCTGAAAAAGACATTGCTTTTATCTTATACT
CAAGCGGCACAACAGGGCTCCCGAAAGGCGTCATGATCAGTCATTTTAGT
ATGATAAATTGTTTGCTCCAGGTCCGGGAGTTTTTTGGAGAAAACATGCC
GGATAACGTATTAGCGGTCATCCCGGTATATCACATGTACGGAATGGTAC
TTTTTCTCTTTGTTAACCCTTACCATGGCAACAGGGTATATACATTACCG
AGTTTTGATCCAGTTCAGTTCTTATCAAGCATACAGAATTATAAGGTATT
TTTTTTGTCATAAAGTGTGCCTACAATCTTGTTGTTTTCTTCTGACGTTG
ATAAAGACTATTCTCAGACGTTACAGTTTTGTATCGTTCCGAAACGAAAC
GGTTTTGAAACTAGTGTGCACGTCAAAATTCGAAACATCAAAAAAGAAGA
CGTTACAAAGTAAAACAGATCGAAACAGCTTCGCTCCACTATTTTCATCG
GAACGGAACTAGTCCGTTTTCTTGCTCCGAAACGTTCCGGAACTAATATG
AACACTCTCGATCCGTAACAGAAACCATACCGGAACGATACGAAACAGTA
ACGTCTGAACATGGATAAAATCTAATTCTGGTGATGTTCCAATCAGATCC
AAAGATTTGCATCATCGATCACAAGATAGGGCATCTCCTCATTCTAAACT
TACACAAATTGACATACTGGAATCATTTATAGGTCAGCATTGATCACCAC
TATTTTAGAGGGGAACCTTTGAATCGAACATCACTTTTAAACTAACTCCA
GACCGCCATAGACGACTTGTCACCAATATCATCTGCGTCTAGGCTAAAAA
TGTTTATAAAATCTAAAACATATCCCAGGTAAAAGATTTACGTAAATCTA
AAATCGCTAGCGAAAATCAAAGCGCTGCATAGAAAGGCTTCGGACACATA
CGGCTATTAAGCAGTTATTGGACAAAGTCGAATCCAATATGCAAAAAATT
TGGGCGTGCGAGAAAAGATATTGGACGAGGCTCGTAATATAGAAGTACAT
GTTTAAAAATATCAAGTGACCCCATATCACTGAATTCATAGTGAATTCAT
AACTTACCCACATTATCGATTTCCATTAGATCGGTCGTATATGTATCGCA
CCACCTATCCTGCTGTTTCTCACTAAAAGCCCGTTGGTTGATCAGTATGA
CATGTCCAGTCTCAAGTCTATTATCGTTGGAGCAGCGCCTGTTGATGAAC
AACTTTCACATGCTTTTAATGAAAGGTTCCCTTGGATAACCTTGCAGCAA
TGTAAGTTTATGCTTCCTCCAATGGAAAATAAAAGCACACTGAAGTATTT
GAATTCAACTCGAAAGGAAGCGTTCACTTTTTCTGAATTTTCCTGAGGGA
AATTTCAAGCCAGATTATCATACCGATGGCCTAGCACAAAAAATTTAAAA
ATTTCCTTCTGACAGGCTAAAGCTCTGAAAGTTGCCAAAACTTCAGATTT
ATAAAGTTTTGCTACGGAAGAATTGTCCGCTAATTCAGAGCTTTGATGTG
GACGGCCGCTACTCCGCTATCCAAATATTAGATCGGATACAAGTAGTTGA
TGAATTGTAATTCTCTTTCAGGTTATGGGATGACAGAAGCTGGTTTCGCC
ACGCTCCAGGCTAATGATGCTTCATTTAACAGTGCAGGATCAGTAGGTCA
AATCTTGGCTGACGGTGAATGCAAGGTACGGGAAGAAACAAAGAAATTAT
AGTTTACTTTCTTCTTACTTAAAATCGCGCTACCTTACAATCGTGTCGAA
ATATATTGAGATTGTTTTGACATTTGAAAGTCTTCAAAATTCAAAGTTCT
TTATTTCATCGGAATTTTCTTACGAGTCGTTTAATGGATTCCAGGAAATA
CTTTCAGCCTTTTTGGAACATTTTTGAGCTTCTCGATCCTGAAATCCTAA
GGTCATCGTAGGTGGTGGTAAGTATTAATTCTAATGTTAAAACTTTCACT
AGTGTACATTGAAATTTCATCCACCTTAGAAACTACATATTTTAAATTCT
ATCTCCCCTAGGAGAGAAACGATAGAATCTCTGCCGTAAATAGAAAAAAA
ACTTAATTCCAATCGATTGAAATCAAATGCATGGAAATGGGGTTTCCCAG
TATCAACAGTCTCAAAACTACATCTATTTCAGGAGCATTGAAAACACCTC
TTGCCCTATAGACATCTTTGTGATCTTCTTTCTAGATAATATCTCTAGGA
ACAGTCGATATATTCTTTAATTTTCCTTTTAGATAGTATCTCTAACGACA
GGCGAATTTTTGGGTCCATATGAACAAGGTGAAGTCTACCTGAGAGGAGC
ACAGCAGATGTTAGGTGAGCAATCCGTAAAAATTCATTCAGAAGATCATC
TTTTTCAGTGGGGAGTATATTTCTAGTTTGAATGTATTTTTAAAGAAGAA
TCAAACTTTGAATAATTTTACAGACGTGTAAGGTCCTTGGCCAAACTATG
ACCTTGGTGAGTGCTAAAAGCCAGTTGCTGTAAGTTTACAATAGGAATTA
GAATTTTAGACAGGGTACCTGAAAGGAAAAAATTCTGACAAATTTAGCTG
AAATCCGCCAAATTAAGTCCGCCGAATTAAAATTCTTTTTGTCCCATCAC
GTCAGTGACACAAAGAGTGTAAAAAATATTTCAACCAATTAACTGATTTC
TCTCCCTTTCAAATTATTTTCTTTAAACTTATCAGGTTATTTAAACAACG
AGAAGGCAACAACAGAAACCATTTTGGAAGACGGTTGGCTACGCTCTGGT
GATTTAGGTTACTATGACGACGAGAATAATTTATTTGTCATCGACCGTTT
GAAAGAGTTGATCAAATATAAAGGTTTCCAGGTATGAGACTGACGGACGA
ATAGGTCATTATTATTTCACCGGTCAATCATTAGAATCGATATTTTACGT
TTACTCAAGAGAATATCATGGTCTGGCATAACAGACTTGACTATCTATTT
ATATGTACAAAAAGTTTAATTTTCGAGATGAGATGATTTTTGAGATAAGG
GTATTTTTAGTTTTAGACCATTTAAAGTGGTAATTTTTCATTCTTTGGGC
TTAAACCAGTCTATATTATCCCATTTACTATCCAAAGGGCTCTACTCGGC
TACCGTGAAAAGCACAGGTCGAAATCATATATCGACGCTGTGCCGACCAA
TCCAGATTCTATTCAGCACGTAATCAACGCAGAGAAAAGTAACCATGACG
ACCATCCAAGATCTTGGATGAAGTTGATATTTTTATTCCCATCGTTGAAA
ACACAACTCAAAAATGTCACCATTGCTTTTTAAAAAGAGTCAGTGATAGA
GAATCATAATGTAAAGTCTGTCTATTATTTCGATTCAATAGACCTTATCG
GAGTTTTTGATTTTTCTAAAAAGGGGTTCATTGTGGGATTGTTTCGAGTG
TATTACAATAGAATTCCCTCGAGGAGTTCCTAAAAGATTTCTATTGTAAC
ACACTCGAAACAATCCCACAATGCATCGCTTTTTTAGAAAAATAAAAAGC
TCCGATAAGGTCTATTAAAGTGACATTTCCATAATCAAAAGTTTAGTAAT
TACTATTATACATTTGGGAATCATGTACAAGATTTCTTATGAAATAAACT
CATTTCAATTACATTTGGAGGTTTCTGGGGAATTTGTAAATAGTAAACTG
CATGCTGATACAGTCTGCTAGACATTAATATGCTCTTCATCTTTGATTTT
CTCTACAGTGATTAGATTGACACATGCGCGATAGAACTTCTATTATTGGT
CTTCAGAGGTTGTCACCCTCTGATACTCAGGGTACTCCTCGGCGGATGCG
ATGCCGGGTGACGGCTAGTACTATTCTAATGTTTTAACCAAAATTTTGAG
GGAACACTTAATACCTAGAAATCAAAACAATCAAACCCAGGTTCTTTAAT
TGATGACCAGGTATACATGTTTTTTTTTTTATAAGCAAGTGTATGCCCCT
TGGTCAGGCTCGTGTATGCTTAAGTTCTCAAAGCATCCAGGCATAGTTTA
TGCTTATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCACCCCGAGCCAAGTT
TTTTAATGAAATTTCAGAAATTTTGTAAAAAATTTGTTCAGATTTTTGGA
GCAGTGGAATGTAGCTAGCCGTGGAATGTCTAATTTTTTACTTGACCTCT
ACCAAACCAGTAAAAAATGAAACAAAAAACAGATAAAAATTACCACTTGA
AAAATATTTTAGGCTGACATATATGCTCATGTTATGCTTAGGAATTCCGC
AAATCTGAGCCTTCATATGCTTATAAGCGTTATGCTTATAAAAAAAAAAC
ATGTACGGGATACGGGATGGTGAGCATTATAGAGCCAAAGAATAGAACAT
GATACCTTTGTAACCATTGCGGTCGCCGGATGAGAAAGCGAAGTGATCCA
CAATATGTTGTACAATATGTATCTGGAAAATAAAAAAAAAATTCACAGTT
TCAATGTTATTTCTGTTTATTTAGGTTGCACCTGCCGAGCTGGAAGATTT
ATTGATTTCTCACGAAAACATTGTGGATAGTTGCGTGATTGGCGTCCCAT
GCGAAAGAGCTGGAGAAGTACCACGCGCCTATATCGTCAAAAAGCCTGGT
AGTGATTTAACAGAAGATGAAGTGAAAGATTTTGTAGGTGAACGATTTTC
TGATCATAAACATCTCCGTGGTGGAGTACAATTCGTAGAACAATTACCGA
AATCGGCATCAGGAAAACTCCTTCGTAGAGTGCTCAGAGATCAATATTTG
GAGGAGAGGGAGTGAATTAGATGATTATTTATGAAATATTTTTCAGGGAA
TTTTTGAATGCTGTGAAATTTTAAGGGAAAATTTCAAAAACGACATATCA
AACCAACTTGGCGGTTGCTTAAGCGAAATGGAGTACGGGGACGTAAATTC
CGGGTTTACCTTAGGACATCCTTACTAGTTTTCAGGGTGGGTTACGCCTT
TCAGGGCCCAAATTTGGTTCCCATTTCGTTTAAATTTTGTCTGACATAGT
CCATATTTTGAACATAAGCGGCACGCCCTCACCGACCGCAGTACCTCCCT
CCCCAGTTGTGGTGACTAACGATATTTCCCCATGTATTAAACTTTTAAAA
TTCTCGTTGTTATATATATTTTTTGTTAATGTATATACGATAGAATATGT
ATTTTAAAGCATAGTGAGTACAAAGTATTGGTTAAACTGTTTTAAATTTT
CTCATCTGACCAATGAGAATTCGTTATTATATACGTCCTGATGCATTACC
CATGATTCATCTGGAACAAGTGATTGCCTATGGATAATGCAAGAAAACAA
AATAACCCAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064080-exon-scaffold_407-1575043694:355438..355695 | TCONS_00064080-exon-scaffold_407-1575043694:355438..355695 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1575043694:353395..353566 | TCONS_00064080-exon-scaffold_407-1575043694:353395..353566 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1575043694:352971..353074 | TCONS_00064080-exon-scaffold_407-1575043694:352971..353074 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1575043694:352332..352413 | TCONS_00064080-exon-scaffold_407-1575043694:352332..352413 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1575043694:351815..351960 | TCONS_00064080-exon-scaffold_407-1575043694:351815..351960 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1575043694:349283..350121 | TCONS_00064080-exon-scaffold_407-1575043694:349283..350121 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1510915933:355438..355695 | TCONS_00064080-exon-scaffold_407-1510915933:355438..355695 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1510915933:353395..353566 | TCONS_00064080-exon-scaffold_407-1510915933:353395..353566 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1510915933:352971..353074 | TCONS_00064080-exon-scaffold_407-1510915933:352971..353074 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1510915933:352332..352413 | TCONS_00064080-exon-scaffold_407-1510915933:352332..352413 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1510915933:351815..351960 | TCONS_00064080-exon-scaffold_407-1510915933:351815..351960 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1510915933:349283..350121 | TCONS_00064080-exon-scaffold_407-1510915933:349283..350121 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1491911889:355438..355695 | TCONS_00064080-exon-scaffold_407-1491911889:355438..355695 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1491911889:353395..353566 | TCONS_00064080-exon-scaffold_407-1491911889:353395..353566 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1491911889:352971..353074 | TCONS_00064080-exon-scaffold_407-1491911889:352971..353074 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1491911889:352332..352413 | TCONS_00064080-exon-scaffold_407-1491911889:352332..352413 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1491911889:351815..351960 | TCONS_00064080-exon-scaffold_407-1491911889:351815..351960 | Clytia hemisphaerica | exon |
TCONS_00064080-exon-scaffold_407-1491911889:349283..350121 | TCONS_00064080-exon-scaffold_407-1491911889:349283..350121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_407 | supercontig | scaffold_407:349283..355695 - |
Blast
BLAST of TCONS_00064080 vs. Swiss-Prot (Human)
Match: ACSF2 (Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 5.193e-25 Identity = 73/253 (28.85%), Postives = 120/253 (47.43%), Query Frame = 1
Query: 280 PPILLFLTKSPLVDQYDMSSLKSIIVGAAPVDEQLSHAFNERFPWITLQQCYGMTEAGFATLQ--ANDASFNSAGSVGQILADGECKIVSLTTGEFLGPYEQGEVYLRGAQQMLGYLNNEKATTETILEDGWLRSGDLGYYDDENNLFVIDRLKELIKYKGFQVAPAELEDLLISHENIVDSCVIGVPCERAGEVPRAYIVKKPGSDLTEDEVKDFVGERFSDHKHLRGGVQFVEQLPKSASGKLLRRVLRDQ 1032
P + + + P YD+S++ ++ +P +L A + L YG TE T D A SVG+I+ E +I+++ G GE+ +RG MLGY + T E + +D W +GD+ +++ ++ R K++I G + PAELED +H + + V+GV +R GE A I K G + T +E+K F + S H + + FV P + SGK+ + LR+Q
Sbjct: 357 PTMFVDILNQPDFSSYDISTMCGGVIAGSPAPPELIRAIINKINMKDLVVAYGTTENSPVTFAHFPEDTVEQKAESVGRIMPHTEARIMNMEAGTLAKLNTPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEETTVEEIKAFCKGKIS-HFKIPKYIVFVTNYPLTISGKIQKFKLREQ 608
The following BLAST results are available for this feature:
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