TCONS_00064160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064160
Unique NameTCONS_00064160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064160 ID=TCONS_00064160|Name=TCONS_00064160|organism=Clytia hemisphaerica|type=transcript|length=863bp
ATACCTTGGCAGCGAGTGCAGCAGGGTTGGGAACATCACTTGAACTCGTT
GTTATGGTAACGTTAGATACTGATGAAGTGCTCAAGGTTGTACTATTGTT
ACCCGTCGTCGTTGTGGAGGATGATGCCGATGCTACTNTAAGGTTGTACT
ATTGTTACTCGTCGTCGTTGTGGAGGATGATGCCGATGCTACTATGGCCG
CTTGCTTTCTTGCCAAGTCAGCACTTTTTGAAGAGGTACTTGCCGTGGGT
GTTTTACCACTCTGCGCTAATCCGAGTTTGTATTTCTCGCGTTGTTCAAT
TTTGAGTGTTAAGTATAAGGTACGAATCGGGAAGTAAACAGCTTGCGGAT
ACACGCGACCGattgagaaaatcaagttgagAACGTGTTGTCCCTCGCTA
CGTACTAAACATGTCAACAGTTGAGGTATCCATGGTAACCAATGGGCGGG
ATGAACGCCCACGCAATATTTCTCCAAAGTCTCCGCCAGACTCCCTTTTT
CATCGTCATAGGTGAGCAGCCACAAGGAGCGCGCAAGATATTTACGACAC
TTCGTTTCGTGGTTGCTTCGACAAGCGTGTAAGTAACAGATAAGCGCGTA
AATCCCCAAAGTTATCGTGCGCTCTTTAACGAATAAATTATCTAAATAAT
CACCCCACAGGGCCCATGCTTTAACTAAAGTGTCATGCATCTGAACAGCC
TCTGAAAATGCTTTGTTAGCTTCTTCAGAGCGCCCTACTTGTGCTAAAAA
CATGccttttaaggcgaaaaattcGGCGGTCATTTCTTTGGAGAAGTATC
GGAGGTTGGTGGATTCGATAACTTCTAAACCTTCTTGTAACTCTTGTTTC
CCcatcactcctt
Run BLAST on NCBI

transcript from alignment at scaffold_41:136951..137893+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064160 ID=TCONS_00064160|Name=TCONS_00064160|organism=Clytia hemisphaerica|type=transcript|length=943bp|location=Sequence derived from alignment at scaffold_41:136951..137893+ (Clytia hemisphaerica)
ATACCTTGGCAGCGAGTGCAGCAGGGTTGGGAACATCACTTGAACTCGTT
GTTATGGTAACGTTAGATACTGATGAAGTGCTCAAGGTTGTACTATTGTT
ACCCGTCGTCGTTGTGGAGGATGATGCCGATGCTACTNTAAGGTTGTACT
ATTGTTACTCGTCGTCGTTGTGGAGGATGATGCCGATGCTACTATGGCCG
CTTGCTTTCTTGCCAAGTCAGCACTTTTTGAAGAGGTACTTGCCGTGGGT
GTTTTACCACTCTGCGCTAATCCGAGTTTGTATTTCTCGCGTTGTTCAAT
TTTGAGTGTTAAGTATAAGGTACGAATCGGGAAGTAAACAGCTTGCGGAT
ACACGCGACCGattgagaaaatcaagttgagAACGTGTTGTCCCTCGCTA
CGTACTAAACATGTCAACAGTTGAGGTATCCATGGTAACCAATGGGCGGG
ATGAACGCCCACGCAATATTTCTCCAAAGTCTCCGCCAGACTCCCTTTTT
CATCGTCATAGGTGAGCAGCCATAAAGAGCGCGCAAGATATTTACGACAC
TTCGTTTCGTGGTTGCTTNGCTCCCTTTTTCATCGTCATAGGTGAGCAGC
CACAAGGAGCGCGCAAGATATTTACGACACTTCGTTTCGTGGTTGCTTCG
ACAAGCGTGTAAGTAACAGATAAGCGCGTAAATCCCCAAAGTTATCGTGC
GCTCTTTAACGAATAAATTATCTAAATAATCACCCCACAGGGCCCATGCT
TTAACTAAAGTGTCATGCATCTGAACAGCCTCTGAAAATGCTTTGTTAGC
TTCTTCAGAGCGCCCTACTTGTGCTAAAAACATGccttttaaggcgaaaa
attcGGCGGTCATTTCTTTGGAGAAGTATCGGAGGTTGGTGGATTCGATA
ACTTCTAAACCTTCTTGTAACTCTTGTTTCCCcatcactcctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040229XLOC_040229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064160-exon-scaffold_41-1491911889:136951..137461TCONS_00064160-exon-scaffold_41-1491911889:136951..137461Clytia hemisphaericaexon
TCONS_00064160-exon-scaffold_41-1510915933:136951..137461TCONS_00064160-exon-scaffold_41-1510915933:136951..137461Clytia hemisphaericaexon
TCONS_00064160-exon-scaffold_41-1575043694:136951..137461TCONS_00064160-exon-scaffold_41-1575043694:136951..137461Clytia hemisphaericaexon
TCONS_00064160-exon-scaffold_41-1491911889:137542..137893TCONS_00064160-exon-scaffold_41-1491911889:137542..137893Clytia hemisphaericaexon
TCONS_00064160-exon-scaffold_41-1510915933:137542..137893TCONS_00064160-exon-scaffold_41-1510915933:137542..137893Clytia hemisphaericaexon
TCONS_00064160-exon-scaffold_41-1575043694:137542..137893TCONS_00064160-exon-scaffold_41-1575043694:137542..137893Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:136951..137893 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.792861	0.726993	0.483067	0	0	0.923125	0.692895	0.970837	0.423681	0.510413	2.91442	0.0187916	0.13352	0.590194	0.696096	1.37903	0.180406	0.545022	0.439863	0.577096	0.570976	0.0765386	1.26242	1.00944	0	0	1.4755	0.880119	0.197721	2.1652
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003151PIK-rel_kinase_FAT
IPR011990TPR-like_helical_dom
IPR014009PIK_FAT
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00064160 vs. Swiss-Prot (Human)
Match: TRRAP (Transformation/transcription domain-associated protein OS=Homo sapiens GN=TRRAP PE=1 SV=3)

HSP 1 Score: 321.627 bits (823), Expect = 9.943e-99
Identity = 144/195 (73.85%), Postives = 171/195 (87.69%), Query Frame = -3 
Query:  277 GVMGKQELQEGLEVIESTNLRYFSKEMTAEFFALKGMFLAQVGRSEEANKAFSEAVQMHDTLVKAWALWGDYLDNLFVKERTITLGIYALICYLHACRSNHETKCRKYLARSLWLLTYDDEKGSLAETLEKYCVGVHPAHWLPWIPQLLTCLVRSEGQHVLNLIFSIGRVYPQAVYFPIRTLYLTLKIEQREKYK 861
            GVMGK E  +GLEVIESTNL+YF+KEMTAEF+ALKGMFLAQ+ +SEEANKAFS AVQMHD LVKAWA+WGDYL+N+FVKER + LG+ A+ CYLHACR  +E+K RKYLA+ LWLL++DD+K +LA+ ++KYC+GV P  WL WIPQLLTCLV SEG+ +LNLI  +GRVYPQAVYFPIRTLYLTLKIEQRE+YK
Sbjct: 3091 GVMGKNECMQGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMWGDYLENIFVKERQLHLGVSAITCYLHACRHQNESKSRKYLAKVLWLLSFDDDKNTLADAVDKYCIGVPPIQWLAWIPQLLTCLVGSEGKLLLNLISQVGRVYPQAVYFPIRTLYLTLKIEQRERYK 3285
The following BLAST results are available for this feature:
BLAST of TCONS_00064160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRRAP9.943e-9973.85Transformation/transcription domain-associated pro... [more]
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