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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064167 ID=TCONS_00064167|Name=TCONS_00064167|organism=Clytia hemisphaerica|type=transcript|length=2227bpRun BLAST on NCBI protein sequence of TCONS_00064167-protein >TCONS_00064167-protein ID=TCONS_00064167-protein|Name=TCONS_00064167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp MKTAIIVLLGVIACASAAFRTCDRKMFAKVGCYARNKALLPDMILNGREVRun BLAST on NCBI transcript from alignment at scaffold_41:344042..352344+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064167 ID=TCONS_00064167|Name=TCONS_00064167|organism=Clytia hemisphaerica|type=transcript|length=8303bp|location=Sequence derived from alignment at scaffold_41:344042..352344+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_41:344042..352344+ >TCONS_00064167 ID=TCONS_00064167|Name=TCONS_00064167|organism=Clytia hemisphaerica|type=CDS|length=14823bp|location=Sequence derived from alignment at scaffold_41:344042..352344+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064167 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 246.514 bits (628), Expect = 1.318e-67 Identity = 126/289 (43.60%), Postives = 174/289 (60.21%), Query Frame = 3
Query: 681 RINGGYGKWAEWTQCDQECGEGMQFRERGCNNPIPSGGGDDCEALGDAAQSRKCMLKECPVDGGYSRWSEYGKCSASCGGGVMKRTRTCTNPEPSNGGQQCEGKAEETQACGMDPCPVDGGFSQWSKYGQCTLTCGGGLRVRERSCTKPSPAHGGKDCDGLTQETESCNSQSCPVDGVWSSWGSYGACSKDCGYGIETRMRTCTNPAPQHNGKGCEGSTKDTRACYKKACPVNGKWSAWSSYTXXXXXXXXXXXXRTRSCTNPAPAHNGRSCSGSTKETVDCNQKVRCP 1547
+++GG+ +W+ W C CG+G+Q R R CN P+P+ GG C+ G + R C K CPVDG +S WS + +C+ SCG G RTRTC NP +GG+ CEG A E C + PCPV G +S W +G C+ +CG G + R R C P PA GG CDG + + CN ++CP+ G W++W S+ ACS CG G R R C++P PQ+ G+ CEGS + C CP +G WS WS + +CS++C GGQ R R+C NP P++ GR+C G + CN + CP
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQ--GSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CP 4812 HSP 2 Score: 226.483 bits (576), Expect = 3.837e-61 Identity = 118/288 (40.97%), Postives = 163/288 (56.60%), Query Frame = 3
Query: 684 INGGYGKWAEWTQCDQECGEGMQFRERGCNNPIPSGGGDDCEALGDAAQSRKCMLKECPVDGGYSRWSEYGKCSASCGGGVMKRTRTCTNPEPSNGGQQCEGKAEETQACGMDPCPVDGGFSQWSKYGQCTLTCGGGLRVRERSCTKPSPAHGGKDCDGLTQETESCNSQSCPVDGVWSSWGSYGACSKDCGYGIETRMRTCTNPAPQHNGKGCEGSTKDTRACYKKACPVNGKWSAWSSYTXXXXXXXXXXXXRTRSCTNPAPAHNGRSCSGSTKETVDCNQKVRCP 1547
++G + +W+ W +C + CG G Q R R CNNP GG CE G+A + C ++ CPV G +S W +G CS SCG G R R C NP P+ GG C+G + Q C CP+ G ++ W+ + C+++CGGG R R R C+ P P +GG+ C+G +++ CNS CP G WS W +G CS+ C G R RTC NP P + G+ C G + C CPV+G W +W S++ CS SC GG+K+R R C +P P GR C G T + CN + CP
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCE--GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQA-CP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00064167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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