TCONS_00064177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064177
Unique NameTCONS_00064177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1089

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064177 ID=TCONS_00064177|Name=TCONS_00064177|organism=Clytia hemisphaerica|type=transcript|length=1089bp
CAAATGTTTTACAATCAACAATTacctaccttaaaggaagaaATTTGGTT
AAATACTTCAAAACTACGAATTTAGATTTAATCTTATAGTGCAAGGATTA
GACATTTCTCCTTCACGTCCATGTATGTCAACTGCAACAACGGCAAAATA
ATAAACATTACCTGTTGCAAATTGCGTCAAAGTGCATGCCATAGGTAATG
GTAAAGCATTGacatttccaattttcttcCACGGTCTTGACTCATTGGGG
CCGGGCGGCCGTATATTACCTTTTGCCTGATGTGCAAACAGCTGATAACA
CTCAACTTTATATTTATCTGGGTTTTCACCCGATTTTTCATAATCCCATG
TTAATATGATGCCACTTCCTGAAGCAGAAATACTGGCTTTTAGTTTTGGT
AACGGGTTAAATGGTAGTGCTATATGAGCTTCAGATGAATTGGGAGGTTT
AGGGGGTGGAGTTTTTGTAGTTGGCAGTGACTGAAGGGCGGGTTTTTGTA
CTTTCTGTGGTTGCTGTATCGGAACTGGTTGTCTTTGGGCGACCATCATT
TGAGGGCGGACTTGTTGTGGCGGAGCTGACCAACTAACAGGAAGACGAAC
ATTGTTCGTTTGAAATCTACTCATAGGCGGTCGAAGTGGGTTTAATGTTC
CTGGGAAATTTTTCCCATTGACTTGAGCGATTTGTTGCACACGATTGTCC
TTTGGATGGGAAGACGCCATGCGTAGACCTTGATTAGCGACCACTACTTG
AGTTCCAATATTATAATGTCCGTTATTTGAGTTCGGGTCAATCATAACAA
ATCCTGGATCGTTTGTCGGGGTTGGTAACGATTGTAATAACATACGTTGC
CCATTAGGAAGGATCTGGTAGAATTGTTGAGGAGCGTGTTGAATTGGTCC
AGGTGGAATATAAACAGACCTCACCGGAGACGCGAAAGAAACCGGTTGAG
GTGACGTGACTGGAACTTTATTGATGTTTCCGATGTTTGATTGTGCTGGC
GGCGTCGTATTTATTGGTACAGGACTCTTTGTTGTAGTACAAATGCGTTT
AGGTGGAGTTTCTACAGGTTGCGGGTTACTGGATGGGCG
Run BLAST on NCBI

transcript from alignment at scaffold_41:584669..586082+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064177 ID=TCONS_00064177|Name=TCONS_00064177|organism=Clytia hemisphaerica|type=transcript|length=1414bp|location=Sequence derived from alignment at scaffold_41:584669..586082+ (Clytia hemisphaerica)
CAAATGTTTTACAATCAACAATTacctaccttaaaggaagaaattttggc
gggaatttaatttggcggatggccgaaaaagttttttagagggaatttaa
tttggcggattgacgaaaaaactaaatttggcgtttgctgaaaaagttat
ccttaaaatggcgtaaaaacagcaaaaaaaatgcaaaaacaccttaaaag
agatcatattttcaaaaagtttaatttggcgggaatttaatttggcggat
tgcggaaaaaaataaattttggcgggaacttaatttggcggattctggcc
gaatctgccaaattcgccaaattttctttccgccagaatttcttccttta
aggtacataTCAACAACATTTGGTTAAATACTTCAAAACTACGAATTTAG
ATTTAATCTTATAGTGCAAGGATTAGACATTTCTCCTTCACGTCCATGTA
TGTCAACTGCAACAACGGCAAAATAATAAACATTACCTGTTGCAAATTGC
GTCAAAGTGCATGCCATAGGTAATGGTAAAGCATTGacatttccaatttt
cttcCACGGTCTTGACTCATTGGGGCCGGGCGGCCGTATATTACCTTTTG
CCTGATGTGCAAACAGCTGATAACACTCAACTTTATATTTATCTGGGTTT
TCACCCGATTTTTCATAATCCCATGTTAATATGATGCCACTTCCTGAAGC
AGAAATACTGGCTTTTAGTTTTGGTAACGGGTTAAATGGTAGTGCTATAT
GAGCTTCAGATGAATTGGGAGGTTTAGGGGGTGGAGTTTTTGTAGTTGGC
AGTGACTGAAGGGCGGGTTTTTGTACTTTCTGTGGTTGCTGTATCGGAAC
TGGTTGTCTTTGGGCGACCATCATTTGAGGGCGGACTTGTTGTGGCGGAG
CTGACCAACTAACAGGAAGACGAACATTGTTCGTTTGAAATCTACTCATA
GGCGGTCGAAGTGGGTTTAATGTTCCTGGGAAATTTTTCCCATTGACTTG
AGCGATTTGTTGCACACGATTGTCCTTTGGATGGGAAGACGCCATGCGTA
GACCTTGATTAGCGACCACTACTTGAGTTCCAATATTATAATGTCCGTTA
TTTGAGTTCGGGTCAATCATAACAAATCCTGGATCGTTTGTCGGGGTTGG
TAACGATTGTAATAACATACGTTGCCCATTAGGAAGGATCTGGTAGAATT
GTTGAGGAGCGTGTTGAATTGGTCCAGGTGGAATATAAACAGACCTCACC
GGAGACGCGAAAGAAACCGGTTGAGGTGACGTGACTGGAACTTTATTGAT
GTTTCCGATGTTTGATTGTGCTGGCGGCGTCGTATTTATTGGTACAGGAC
TCTTTGTTGTAGTACAAATGCGTTTAGGTGGAGTTTCTACAGGTTGCGGG
TTACTGGATGGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040241XLOC_040241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064177-exon-scaffold_41-1491911889:584669..584710TCONS_00064177-exon-scaffold_41-1491911889:584669..584710Clytia hemisphaericaexon
TCONS_00064177-exon-scaffold_41-1510915933:584669..584710TCONS_00064177-exon-scaffold_41-1510915933:584669..584710Clytia hemisphaericaexon
TCONS_00064177-exon-scaffold_41-1575043694:584669..584710TCONS_00064177-exon-scaffold_41-1575043694:584669..584710Clytia hemisphaericaexon
TCONS_00064177-exon-scaffold_41-1491911889:585036..586082TCONS_00064177-exon-scaffold_41-1491911889:585036..586082Clytia hemisphaericaexon
TCONS_00064177-exon-scaffold_41-1510915933:585036..586082TCONS_00064177-exon-scaffold_41-1510915933:585036..586082Clytia hemisphaericaexon
TCONS_00064177-exon-scaffold_41-1575043694:585036..586082TCONS_00064177-exon-scaffold_41-1575043694:585036..586082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:584669..586082 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.7236	32.7603	28.1224	30.6509	7.95641	8.1768	13.7809	13.6226	7.59962	15.4643	8.3887	7.15591	6.63154	6.09012	6.39093	7.46565	9.88825	12.4076	4.17153	7.01004	5.84516	5.59222	16.3014	13.109	11.0881	10.5374	8.67761	7.4162	9.6669	10.7167
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR003961FN3_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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