|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064193 ID=TCONS_00064193|Name=TCONS_00064193|organism=Clytia hemisphaerica|type=transcript|length=9481bp transcript from alignment at scaffold_41:125928..159390- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064193 ID=TCONS_00064193|Name=TCONS_00064193|organism=Clytia hemisphaerica|type=transcript|length=33463bp|location=Sequence derived from alignment at scaffold_41:125928..159390- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064193 vs. Swiss-Prot (Human)
Match: TRRAP (Transformation/transcription domain-associated protein OS=Homo sapiens GN=TRRAP PE=1 SV=3) HSP 1 Score: 1063.91 bits (2750), Expect = 0.000e+0 Identity = 543/1081 (50.23%), Postives = 730/1081 (67.53%), Query Frame = 3
Query: 3198 CTNCSNVKVAKAAHGLLNKLLAIFPIE--SGPQGNKVDELDSLYNSIGSNIYEGLVGYE--TNANSTSLYGPIMLLKAACATSANYLDKFLIHFMKAMQKMQKDHVTGQTGGENGNLTDLLITSLEXQTGGENGNLTDLLITSLELAKTRLVAMHGDMRKVFL-TILTTLIEKSPDAKLLKAMIKMVDEWVRTKTTPQNQNNVPSLREKSLLLYRMMLNFEKRFADELELHAQFSEIVHYVYSEKCFTGSELTARLEPAFLAGLRSVNPTIRIKFMDIFSKSVRKRLYDRLMYIIATQNWEHMGNHYWIKQCLELLLNIVQADRRMLCSSTYSRLPSCMSV--LRQSQNADGPKLVKQVKDELDASTKIKKEEKPAAISTDIKIKTEPVDEVVSMETTEIKEEVFLPKFFSLANDSKEVLDKLQNGISIAPYSDEDYSSLLDKLAENQGTFLKSLSKCTMGTFVHSVAQLSHRSTILAHKIWVDLFPQIWELLDERYHQTLSGELGPFLSSGSHIAQMEGYRSSINTLVEGMSKCDPPIPIRPIVLKYLGKTHNLWHQAALILEGMTVACDDMVSVNPQLPLQQPWLDFGLYDDEVSEIPYQETFDSXXXXXXXXXXXXXXXXXWQRKAKFQETITALSYEQQGLYELAQTSYEGAMNKAREQSNNSRLDPRLLSEYQLWENRWVRCAKELGQWDILIEFGKTKAQSNPFIILESAWRIPDWQVMKEALTQVEISFPESLAYQLTLYRGYLTICHPEDQNLSNIEKLVDTASTQAIRQWRKLPQIVSAMHTNILRAAQQIIELQEASQLHIGLQQSNIGRITSLHDMKATVKTWRNRLPLQCDSLVHWSDIFMWRHHHYQ-----------AIVAAYENLXXXXXXXXXXXXNHAMLGVHASAWSIIYYGYIARKHGLTGVCLDSLSRIHTIPSVPIVDCFQKIRQQVKCYLQMAGVMGKQELQEGLEVIESTNLRYFSKEMTAEFFALKGMFLAQVGRSEEANKAFSEAVQMHDTLVKAWALWGDYLDNLFVKERTITLGIYALICYLHACRSNHETKCRKYLARSLWLLTYDDEKGSXA 6386
C C N KV +A H LL++L++IFP E + +K +EL+ LY ++G IYEGL YE TNAN + L+G +M+LK+AC+ + +Y+D+ + FM+++QKM ++H+ Q S E +G ++L++ SLEL KTRL M +MRK F+ ILT+LIEKSPDAK+L+A++K+V+EWV+ +P N P+LREKS+LL +MM EKRF ++LEL+AQF ++V+YVY ++ +GSELTA+LEPAFL+GLR P IR KF ++F S+++R+Y+RL+Y+ +QNWE MGNH+WIKQC+ELLL + + + S + LPS +V L S + +V VK E + +E+ +I I+ P D+ + +T E+ S++D + L L FL +L + G + + QL H ST LA K WV LFP++W++L +R L+GE+ PFL SGSH Q + S++N VE MS+C PPIPIRP VLKYLGKTHNLW ++ L+LE + + P+ + Y+ E P QE DSLAE+Y LL E+D+ AGLWQ++ K+ ET TA++YEQ G +E AQ SYE AM+KA+++ S P + EYQLWE+ W+RC+KEL QW+ L E+G++K NP+++LE AWR+ +W MKEAL QVE+S P+ +A+++ +YRGYL ICHPE+Q LS IE+LV+ AS+ AIR+WR+LP +VS +HT +L+AAQQIIELQEA+Q++ GLQ +N+GR SLHDMK VKTWRNRLP+ D L HWS IFMWR HHYQ +IV AYEN +S+ SSN+AMLGVHASA +II YG IARK GL V LD LSRIHTIP+VPIVDCFQKIRQQVKCYLQ+AGVMGK E +GLEVIESTNL+YF+KEMTAEF+ALKGMFLAQ+ +SEEANKAFS AVQMHD LVKAWA+WGDYL+N+FVKER + LG+ A+ CYLHACR +E+K RKYLA+ LWLL++DD+K + A
Sbjct: 2200 CMTCGNTKVLRAVHSLLSRLMSIFPTEPSTSSVASKYEELECLYAAVGKVIYEGLTNYEKATNANPSQLFGTLMILKSACSNNPSYIDRLISVFMRSLQKMVREHLNPQAAS----------GSTEATSGT-----SELVMLSLELVKTRLAVMSMEMRKNFIQAILTSLIEKSPDAKILRAVVKIVEEWVKN-NSPMAANQTPTLREKSILLVKMMTYIEKRFPEDLELNAQFLDLVNYVYRDETLSGSELTAKLEPAFLSGLRCAQPLIRAKFFEVFDNSMKRRVYERLLYVTCSQNWEAMGNHFWIKQCIELLLAVCEKSTPIGTSCQGAMLPSITNVINLADSHDRAAFAMVTHVKQEPRERENSESKEE----DVEIDIELAPGDQTSTPKTKEL--------------------------------SEKDIGNQLHMLTNRHDKFLDTLREVKTGALLSAFVQLCHISTTLAEKTWVQLFPRLWKILSDRQQHALAGEISPFLCSGSHQVQRDCQPSALNCFVEAMSQCVPPIPIRPCVLKYLGKTHNLWFRSTLMLEHQAFEKGLSLQIKPKQTTE-------FYEQESITPPQQEILDSLAELYSLLQEEDMWAGLWQKRCKYSETATAIAYEQHGFFEQAQESYEKAMDKAKKEHERSNASPAIFPEYQLWEDHWIRCSKELNQWEALTEYGQSKGHINPYLVLECAWRVSNWTAMKEALVQVEVSCPKEMAWKVNMYRGYLAICHPEEQQLSFIERLVEMASSLAIREWRRLPHVVSHVHTPLLQAAQQIIELQEAAQINAGLQPTNLGRNNSLHDMKTVVKTWRNRLPIVSDDLSHWSSIFMWRQHHYQGKPTWSGMHSSSIVTAYEN-----SSQHDPSSNNAMLGVHASASAIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECMQGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMWGDYLENIFVKERQLHLGVSAITCYLHACRHQNESKSRKYLAKVLWLLSFDDDKNTLA 3216 HSP 2 Score: 974.541 bits (2518), Expect = 0.000e+0 Identity = 533/1096 (48.63%), Postives = 717/1096 (65.42%), Query Frame = 1
Query: 7 EKLCGCCYERAWFAKSGGCSAIEFLMNNMPLQWVIEQQPMFISALMFVMMDLTNEVSSGAVESAKRILEQLLRKC------NEVKEEHTSTREQYFSIVVQNMVREVVSPNHTVREQARHSLHVLSEVTSKSVHALMEPHKSLLEDMIPPKKHLLRHQPVNTQIALMDGNTFCTSLTPRLFTMDLSIVEHKVFFTELYTLCEADDNTLMKLPCYKSVTSFVQLRVSALAALTSCHYIVQAREKIFNVLVKAINSTHAQVMQAGKENMKKFITGGALESVKELVSVNIRPLLLMLGDYRSLSISVLQKLTCFMELFPELFNEKLCEQLLALLRRWMDTAISTANNENQQQVKPAVRST-----------EEIKICSAIMNMFHLVPAASSKLIEPLITLTVKTERGLVLEIGSPFRKPLVDFLLHYPQQTVDYFLL--NIADPLINRLFVSVLKRDDTKPLRTALEGSAVKLVSSTFISVAQNQGTEDQSPVAVQKRQQLQFQGILIIRTLVKFNSEWLSQQPVLITHLRRIWNNHPLFDKARRLDTNNNEYWREIKLLAKCLLTYVTHKSGETEVLFQLLKVHTVRSIPSFHFLKNFL-QHICKNYTVEEKRNVFFKFVECFQNQTFSQDIKAMILQHIIIPMFEESFKKGETDELVGTPPKPEVDIPTNIIHVFVENIIDPGQPFATTDSVRILLLQFSALLVEHAGAHIHDAANRKQGNKLKRLYIFAWPCLLSKQCVDPATKYHGFFLQXXXXXXXXXXXXXVLQVFHGLLKAHGQEARTIVRQGLDILTPVMPTRMEDGYAMLSHWTKKIIVEEGXXXXXXXXXXXXXXXXXXXYYAVRMDLVQHMISSMQRLGFTQSATIEHRKLAVDLAEVIIXXXXXXXXXXXXXXNGGSSTTAGSGLKKTTPGGETPSTIIGIKRASTDQNDGANKRARGITGQ-----------RGTDKLENLKAIFEKVVYDAVCNFLFRVSCQVNEQSTSSSSPGEALSKRCFKLLQQCLKPFCWPDAELRITWLDKLFLMLDQANSTNFANVTMALEILAWLCTVRNKQDLLAMFKTLQRGIITCTNCSNVKVAKAAHGLXSHV 3201
E+LC CCYE+AW+AK GG +I+FLM +PL WV++ Q F+ AL+FVMMDLT EVS+GAV AK LEQLL +C E EE + +E+ F V ++VREV SPN TVR+QA HSL VL++VT KSV +MEPHK +L+DM+PPKKHLLRHQP N QI LM+GNTFCT+L PRLFTMDL++VEHKVF+TEL LCEA+D+ L KLPCYKS+ S V LR++AL AL +C+Y+ Q+REKI L KA+NST++++ +AG+ M+KF+ G +E + + ++RPLL+MLGDYRSL+++V+ +LT LFP FN+K C+Q++ LR+WM+ + T + ++ EE+KICSAI+N+FHL+PAA L++PL+ + +KTER +++E GSPFR+PL+ FL +P QTV+ F++ + DP +R+F+S LK D +PLR L + + ++ AQ SP R LQFQ I II +VK + WL+ Q L++ LRR+W + F + R + W+E KLLA CLL Y G+ E+LFQLL+ T R + + FLK ++ + I KNY++ +KR +FF+FV+ F + F ++KA +LQHI+ P F SF+KGE ++L+G PP PE D P +I VF+ ++DP + DS+RI LLQ++ LLVEHA HIHD N+ + +KL+RL FAWPCLLSK CVDPA KY G L AHII KFAIHKK VLQVFH LLKAH EAR IVRQ + ILTP +P RMEDG+ ML+HWT+KIIVEEGHT+ QLVH+L L+V+H VYY VR LVQHM+S+MQRLGFT S TIE R+LAVDL+EV+I+WE +R S + + G S IKR + + KR R TG G D L L +K D V NFL RV+CQVN+ + ++ SPGE LS+RC LL+ L+P WP +EL++ W DKL + ++Q N N+ N+ LE+L++L TV +L+ FK LQRGI C C N KV +A H L S +
Sbjct: 1143 ERLCACCYEQAWYAKLGGVVSIKFLMERLPLTWVLQNQQTFLKALLFVMMDLTGEVSNGAVAMAKTTLEQLLMRCATPLKDEERAEEIVAAQEKSFHHVTHDLVREVTSPNSTVRKQAMHSLQVLAQVTGKSVTVIMEPHKEVLQDMVPPKKHLLRHQPANAQIGLMEGNTFCTTLQPRLFTMDLNVVEHKVFYTELLNLCEAEDSALTKLPCYKSLPSLVPLRIAALNALAACNYLPQSREKIIAALFKALNSTNSELQEAGEACMRKFLEGATIEV--DQIHTHMRPLLMMLGDYRSLTLNVVNRLTSVTRLFPNSFNDKFCDQMMQHLRKWMEVVVITHKGGQRSDGNESISECGRCPLSPFCQFEEMKICSAIINLFHLIPAAPQTLVKPLLEVVMKTERAMLIEAGSPFREPLIKFLTRHPSQTVELFMMEATLNDPQWSRMFMSFLKHKDARPLRDVLAANPNRFITLLLPGGAQT-AVRPGSPSTSTMRLDLQFQAIKIISIIVKNDDSWLASQHSLVSQLRRVWVSEN-FQERHRKENMAATNWKEPKLLAYCLLNYCKRNYGDIELLFQLLRAFTGRFLCNMTFLKEYMEEEIPKNYSIAQKRALFFRFVD-FNDPNFGDELKAKVLQHILNPAFLYSFEKGEGEQLLG-PPNPEGDNPESITSVFITKVLDPEKQADMLDSLRIYLLQYATLLVEHAPHHIHD-NNKNRNSKLRRLMTFAWPCLLSKACVDPACKYSGHLLLAHIIAKFAIHKKIVLQVFHSLLKAHAMEARAIVRQAMAILTPAVPARMEDGHQMLTHWTRKIIVEEGHTVPQLVHILHLIVQHFKVYYPVRHHLVQHMVSAMQRLGFTPSVTIEQRRLAVDLSEVVIKWELQRI----------KDQQPDSDMDPNSSGEGVNSVSSSIKRGLSVDSAQEVKRFRTATGAISAVFGRSQSLPGADSL--LAKPIDKQHTDTVVNFLIRVACQVNDNTNTAGSPGEVLSRRCVNLLKTALRPDMWPKSELKLQWFDKLLMTVEQPNQVNYGNICTGLEVLSFLLTVLQSPAILSSFKPLQRGIAACMTCGNTKVLRAVHSLLSRL 2219 HSP 3 Score: 771.541 bits (1991), Expect = 0.000e+0 Identity = 390/572 (68.18%), Postives = 466/572 (81.47%), Query Frame = 1
Query: 7261 IRAPPQMWRCSRIMHMLRDLHPTLLSALEGIVDQMVWFRECWHEDVLRQLRQGLAKCYQVAFEHRADVNSAQITPRTLSFVKKLVSTFGIGFESASNVSQTFXXXXXXXXXXXXQVTAQDPVFQKLKSQFSADFDFSQPNSMKLHTXXXXXXXXXXXXEAKAKLLPSSFLLEETCRFISNFSQSTAEVELPGEFLMPKATTHNAFYVRIAKFMPRVELVQRHNFSARRLTIRGHNGKLYPYLVVNDAWLTESRREERVLQLLRMLNHFFDKRKETCHRGLQFTVPRVVAVSPQMRLIEDNPSFISLSEIYKERCGKRRVDPEQPIALYYEKMAQIQSRGFPLNHQSLREILKEIQSTVVPDTLLKEWTMATYPTATEYWTFRKKLSQQIALAGFIEFVLHLTRLGPEMINIAKDCGNVTFNYFRFDIDDSKGELDANRPVPFRLTPNLWEFITPVGVHGVIAHSMIAVARCLVQPQFSINSYFKTILKDELIGWNKKKQ-DEQNPLSSNNQSE-MDNEVLINLVTSASTAMMTRLQNLAIFENGESKISTLISAASSPDNTCRMDPAWHPWL 8970
IRA MWRCSRIMHM R+LHPTLLS+LEGIVDQMVWFRE WHE+VLRQL+QGLAKCY VAFE V+ A+ITP TL+FVKKLVSTFG+G E+ SNVS FSSAASESLARRAQ TAQDPVFQKLK QF+ DFDFS P SMKLH LISKLKKWIKILEAK K LP FL+EE CRF+SNFS TAEVE+PGEFLMPK T +Y++IA+FMPRVE+VQ+HN +ARRL IRGHNGK+YPYLV+NDA LTESRREERVLQLLR+LN +KRKET R L FTVPRVVAVSPQMRL+EDNPS +SL EIYK+RC K+ ++ + PI+ YY+++A +Q+RG +HQ LR+ILKE+QS +VP ++LKEW + T+P AT+YWTFRK + Q+AL GF EFVLHL RL PEM+ IA+D G + YFRFDI+D+ G+LDANRPVPFRLTPN+ EF+T +GV G + SMIAVARC QP F ++ KT+L+DE+I W+KK Q D +PLS+ Q E MD++ L++LV A TA+MTRL NLA FE GESK++TL++AA+S DN CRMDPAWHPWL
Sbjct: 3291 IRATAPMWRCSRIMHMQRELHPTLLSSLEGIVDQMVWFRENWHEEVLRQLQQGLAKCYSVAFEKSGAVSDAKITPHTLNFVKKLVSTFGVGLENVSNVSTMFSSAASESLARRAQATAQDPVFQKLKGQFTTDFDFSVPGSMKLHNLISKLKKWIKILEAKTKQLPKFFLIEEKCRFLSNFSAQTAEVEIPGEFLMPKPT---HYYIKIARFMPRVEIVQKHNTAARRLYIRGHNGKIYPYLVMNDACLTESRREERVLQLLRLLNPCLEKRKETTKRHLFFTVPRVVAVSPQMRLVEDNPSSLSLVEIYKQRCAKKGIEHDNPISRYYDRLATVQARGTQASHQVLRDILKEVQSNMVPRSMLKEWALHTFPNATDYWTFRKMFTIQLALIGFAEFVLHLNRLNPEMLQIAQDTGKLNVAYFRFDINDATGDLDANRPVPFRLTPNISEFLTTIGVSGPLTASMIAVARCFAQPNFKVDGILKTVLRDEIIAWHKKTQEDTSSPLSAAGQPENMDSQQLVSLVQKAVTAIMTRLHNLAQFEGGESKVNTLVAAANSLDNLCRMDPAWHPWL 3859 HSP 4 Score: 154.836 bits (390), Expect = 6.543e-37 Identity = 74/118 (62.71%), Postives = 90/118 (76.27%), Query Frame = 2
Query: 6320 VS*ISCALLVAAHL*R*KREXSNHETKCRKYLARSLWLLTYDDEKGSLAETLEKYCVGVHPAHWLPWIPQLLTCLVRSEGQHVLNLIFSIGRVYPQAVYFPIRTLYLTLKIEQREKYK 6673
VS I+C L H +E+K RKYLA+ LWLL++DD+K +LA+ ++KYC+GV P WL WIPQLLTCLV SEG+ +LNLI +GRVYPQAVYFPIRTLYLTLKIEQRE+YK
Sbjct: 3177 VSAITCYLHACRH---------QNESKSRKYLAKVLWLLSFDDDKNTLADAVDKYCIGVPPIQWLAWIPQLLTCLVGSEGKLLLNLISQVGRVYPQAVYFPIRTLYLTLKIEQRERYK 3285 The following BLAST results are available for this feature:
BLAST of TCONS_00064193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.