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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064232 ID=TCONS_00064232|Name=TCONS_00064232|organism=Clytia hemisphaerica|type=transcript|length=2474bp
GAGAAAATTAACGAATCAGCTGCGCGCAAAACAAGCGCGTGCTTTTCTCT
TTGACCATATATGGTCAACAAAGAGAATTAATATCCCGACATGCTTTGCG
TTTCAGAAAATATGAAGTTTTACTGACAATCCGCTTTAGATGTTGTGAAC
ACAAAGAAAAGAACACTGAAAAAGAATTACTGAGAAGGACGAAGTGGTAT
TTTCAAAAGGATTTGAACATTTGAATGTAGAAGGCTTTACAagATGAAAC
AATAAAGAACATACAGACACGATAACAATGTTATCAGAAGATACCAAAAC
AAATtcagagaactttttaaaaaacggTGAAGTTAAAGAAATGAAGGATA
TCAAAGATGACCCATCAGCACTTCTTTCCTCTGTCGattcaaaaaatctg
aaaatcgaatCACTCAAAGAGCTATGTTCGACTGAAATGATGAAAGCTCc
gaagaaagaagagaaagttGAATCTAAAGACATGGCTGTCCAAACAGAAG
ATTGCTTGTGGCTCCAGGAACTTATCCAGAAAGTAGTTACTGTACGCGTC
AAAGCATACCAGAAAGCTGCAGAAAAATCTGAACGAATGGACGAAAAATT
ATCTCCTGTTTTGAAAAGGCTGAAGGAAGAAAATCGGGATCTTCGAGAAA
AAGCATCCGTTTTGAAACAGAAACTTCAAGCCATTGAAAGATACCAAAAT
TCTGCTAAAAAGCGCCCATCCAGTAACCCGCAACCTGTAGAAACTCCACC
TAAACGCATTTGTACTACAACAAAGAGTCCTGTACCAATAAATACGACGC
CGCCAGCACAATCAAACATCGGAAACATCAATAAAGTTCCAGTCACGTCA
CCTCAACCGGTTTCTTTCGCGTCTCCGGTGAGGTCTGTTTATATTCCACC
TGGACCAATTCAACACGCTCCTCAACAATTCTACCAGATCCTTCCTAATG
GGCAACGTATGTTATTACAATCGTTACCAACCCCGACAAACGATCCAGGA
TTTGTTATGATTGACCCGAACTCAAATAACGGACATTATAATATTGGAAC
TCAAGTAGTGGTCGCTAATCAAGGTCTACGCATGGCGTCTTCCCATCCAA
AGGACAATCGTGTGCAACAAATCGCTCAAGTCAATGGGAAAAATTTCCCA
GGAACATTAAACCCACTTCGACCGCCTATGAGTAGATTTCAAACGAACAA
TGTTCGTCTTCCTGTTAGTTGGTCAGCTCCGCCACAACAAGTCCGCCCTC
AAATGATGGTCGCCCAAAGACAACCAGTTCCGATACAGCAACCACAGAAA
GTACAAAAACCCGCCCTTCAGTCACTGCCAACTACAAAAACTCCACCCCC
TAAACCTCCCAATTCATCTGAAGCTCATATAGCACTACCATTTAACCCGT
TACCAAAACTAAAAGCCAGTATTTCTGCTTCAGGAAGTGGCATCATATTA
ACATGGGATTATGAAAAATCGGGTGAAAACCCAGATAAATATAAAGTTGA
GTGTTATCAGCTGTTTGCACATCAGGCAAAAGGTAATATACGGCCGCCCG
GCCCCAATGAGTCAAGACCGTGgaagaaaattggaaatgtCAATGCTTTA
CCATTACCTATGGCATGCACTTTGACGCAATTTGCAACAGGTAATGTTTA
TTATTTTGCCGTTGTTGCAGTTGACATACATGGACGTGAAGGAGAAATGT
CTAATCCTTGCACTATAAGATTAAATCTAAATTCGTAGTTTTGAAGTATT
TAACCAAATGTTGTTGAtatgtaccttaaaggaagaaattctggcggaaa
gaaaatttggcgaatttggcagattcggccagaatccgccaaattaagtt
cccgccaaaatttatttttttccgcaatccgccaaattaaattcccgcca
aattaaactttttgaaaatatgatctcttttaaggtgtttttgcattttt
tttgctgtttttacgccattttaaggataactttttcagcaaacgccaaa
tttagttttttcgtcaatccgccaaattaaattccctctaaaaaactttt
tcggccatccgccaaattaaattcccgccaaaatttcttcctttaaggta
ggtAATTGTTGATTGTAAAACATTTGAAgagttttgaattatttttcact
tATACAACAAGAACAGCTCAAATATTACAAAATTGGTTATGTTTGAGAAA
ATCTTCTTCGTCGTCACATCAAACCgattattttcttttgaaaaaggaat
ttcttttgttttcctatGAATTTTCTGTTCCACTGAAAAAGAGGaatcct
ttttttaaagaaaggcCACTTTGTCATTATATCTCTGTAATTATTCCTAA
AACTATTTATTATTTGtgtataatatttttaaaaacatttttgcgtTCCC
TTTTTTTTTACTCCATAGTGCATGCCATCATTAGTATATTGTTAATATTG
TTATGGAAAGTTAAAATATATTTA Run BLAST on NCBI transcript from alignment at scaffold_41:584321..588950- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064232 ID=TCONS_00064232|Name=TCONS_00064232|organism=Clytia hemisphaerica|type=transcript|length=4630bp|location=Sequence derived from alignment at scaffold_41:584321..588950- (Clytia hemisphaerica)
GAGAAAATTAACGAATCAGCTGCGCGCAAAACAAGCGCGTGCTTTTCTCT
TTGACCATATATGGTCAACAAAGAGAATTAATATCCCGACATGCTTTGCG
TTTCAGAAAATATGAAGTTTTACTGACAATCCGCTTTAGATGTTGTGAAC
ACAAAGAAAAGAACACTGAAAAAGAATTACTGAGAAGGACGAAGTGGTAT
TTTCAAAAGGATTTGAACATTTGAATGTAGAAGGCTTTACAGTGGGTCTT
TTTGAACGGGATTTTTTATCTCTTAGTCTTAGAAAAAACTAATTTTCACA
GATTTTCGAGGGTAAATTTGTTTTTTACTATGTATAAATGTGAATGAAGA
AATTCAAAGAATGTATTTGTGACTTTCTTTATTATAACTTTCAACTGTAG
GAATAATGACAGACAGTCTCGTGCAAACAAAACTGCAAATGAGATCCTCG
TTTCTGAAAAAGTATTCGAATGTTTTAACACACTCAACGTTCGAATTTGA
TTATTCAGAATATGAGTTCGAACAAAAAGCATGAAGAATTATTTTAAGAT
TTTGAGAGGTGATCACGTGTGCAATTTGGGAAGATGTTTGCGGGTTGTTT
AAGAAAGTACCAATAAATAAATCCGGATTAAAATCCTGACTACATTGGCT
GAACAAGGTGGGTTAGCTGAAACTTGAATTAGAAGATTGTCTGAAACCGA
CAAAGAATATCTCTCCATTGTTTTCTCCTTTCGTATTGGAATAACTTAGC
GATTCTTGAGTACATCCAGGATTGCAAATACTATAAATGAGAAAAGAGGC
CTGGAAAAGAAAGAGCATCGTCCGAGCCACGTCCGAGCCACGTCCGAGCC
ACGTGCACATAATCAATTTTATGAATATACTCTGTCTCAACCCGATCTCG
ACAGGGAGCAAGCAAGACCGATGATAATTCAACAACTCATTAGCTAAATT
TAGCACCTAATGTCGTAACGTATCTCGACTACTATTTGCTAACATAGCAT
TGCATTTTTTTAATAAAGGAAAAGAACAAATTTTCCCTCTTCTGCGCCTC
CTCTCCTTCTCCTACACACATTTTGAGAAATTATTTTATTAATTCTGATT
TGTCAGCATTAGAGGCGCGGCTCTTTCTATGCCATAAGAATAACTCCAGC
AAAGCGCCATAAGACGAGATACAGTAACACAGTTATCTTCATTCATAAAT
ATTTTTAATTAACATCCTCAAATTACCTTCAATCGAGATTTCCTTTGACA
AAAGTTACCGTAATTGCTCCGGGAATCAATGAAACTTTTTTTCCCGCGTT
TATTATATAATTTGTTATGCACAAGCTATAATGATTGGTTTATTGTTTGT
GCGCGCGTAAACATTTGAATTTAATTTCAATATCCAGGCAGGTATATTTG
TTTGCCTCAAGAAGCATTCCTTATTAACAGTTCTCATTTAATGCAATGGA
GTCTCGTTAATTCCAACACGCTTAGGGACCACAAACTTGTTCGAGTTAAG
GAAATTTCGAGTTATGGGGTAAGGTTTAAGAGTTTTTGTTAACTGAAGGG
ACCATAAAACTTGTTCGAGTTAAGGAGATATTCGATTTATGGAGGTTTTA
GTTAAAGAGACTTTACTGATGTGTACTGTAACTATAAAAATGATTGATAG
TCTGAATCGCACAATCGATCGCAGGTAGTGTGTCTTTGACGAGTAACAAG
AATTCGTTAGTGGATGACAGCAGCCTAAATGGTTACTTTCTGAACTTGGA
CAAATTATCTCGTCGAATAATTTATTTTTTACGGATGACAAACAATTCCG
CGTGAAATCCGCGAAATTTAATCCCCGTGAAAATTAATCCCATTATAAAG
TAATGTCTTTTGGGACATCGAAATGTCGTGAAAACTGTCATCATTTTAGA
TTTTCTATGCCACTTTTGTGTGACAATATTTTTCCTTTTACACCTTGCTT
ATAACAAAAACATCATCTTTGTTGATTGACATTACGTAATGAGGTCAAGT
TTTTTTTTCTTAGAGATGAAACAATAAAGAACATACAGACACGATAACAA
TGTTATCAGAAGATACCAAAACAAATTCAGAGAACTTTTTAAAAAACGGT
GAAGTTAAAGAAATGAAGGATATCAAAGATGACCCATCAGCACTTCTTTC
CTCTGTCGATTCAAAAAATCTGAAAATCGAATCACTCAAAGAGCTATGTT
CGACTGAAATGATGAAAGCTCCGAAGAAAGAAGAGAAAGTTGAATCTAAA
GACATGGCTGTCCAAACAGAAGATTGCTTGTGGCTCCAGGTAATTAACGT
TTGAATGGAATTAGCCTTGAAATTATATTACGTTTTTATTTTACGTTTTC
CGCCCTGTATCGTTTGCTTTTTATTCTAAATGAAACACTGCATATAACTA
CTAAGGGTAGTTAAACATTTTACTGTTTTATATGGTACCAATTGAATAGG
GAAAATAACAAATCAATAAGTCGTTATTCCATCGTTTAATTACGAACAAT
ATATAATTTAGAAACTTTTTTCTTAAACTTCAGGAACTTATCCAGAAAGT
AGTTACTGTACGCGTCAAAGCATACCAGAAAGCTGCAGAAAAATCTGAAC
GAATGGACGAAAAATTATCTCCTGTTTTGAAAAGGCTGAAGGAAGAAAAT
CGGGATCTTCGAGAAAAAGCATCCGTTTTGAAACAGAAACTTCAAGCCAT
TGAAAGATACCAAAATTCTGCTAAAAAGGTAGGTTTTAAGACACGATGGT
GTTCGTAAGAACACTTAATTTACATTGCATTAATGTCTAGTTCTTTCTAA
AGAAAATTGCTAATGTGTTTGGAGGTATCAGTCTTATAAGGAAATCTTTT
GTATTACATTTCAATCAGCGCCCATCCAGTAACCCGCAACCTGTAGAAAC
TCCACCTAAACGCATTTGTACTACAACAAAGAGTCCTGTACCAATAAATA
CGACGCCGCCAGCACAATCAAACATCGGAAACATCAATAAAGTTCCAGTC
ACGTCACCTCAACCGGTTTCTTTCGCGTCTCCGGTGAGGTCTGTTTATAT
TCCACCTGGACCAATTCAACACGCTCCTCAACAATTCTACCAGATCCTTC
CTAATGGGCAACGTATGTTATTACAATCGTTACCAACCCCGACAAACGAT
CCAGGATTTGTTATGATTGACCCGAACTCAAATAACGGACATTATAATAT
TGGAACTCAAGTAGTGGTCGCTAATCAAGGTCTACGCATGGCGTCTTCCC
ATCCAAAGGACAATCGTGTGCAACAAATCGCTCAAGTCAATGGGAAAAAT
TTCCCAGGAACATTAAACCCACTTCGACCGCCTATGAGTAGATTTCAAAC
GAACAATGTTCGTCTTCCTGTTAGTTGGTCAGCTCCGCCACAACAAGTCC
GCCCTCAAATGATGGTCGCCCAAAGACAACCAGTTCCGATACAGCAACCA
CAGAAAGTACAAAAACCCGCCCTTCAGTCACTGCCAACTACAAAAACTCC
ACCCCCTAAACCTCCCAATTCATCTGAAGCTCATATAGCACTACCATTTA
ACCCGTTACCAAAACTAAAAGCCAGTATTTCTGCTTCAGGAAGTGGCATC
ATATTAACATGGGATTATGAAAAATCGGGTGAAAACCCAGATAAATATAA
AGTTGAGTGTTATCAGCTGTTTGCACATCAGGCAAAAGGTAATATACGGC
CGCCCGGCCCCAATGAGTCAAGACCGTGGAAGAAAATTGGAAATGTCAAT
GCTTTACCATTACCTATGGCATGCACTTTGACGCAATTTGCAACAGGTAA
TGTTTATTATTTTGCCGTTGTTGCAGTTGACATACATGGACGTGAAGGAG
AAATGTCTAATCCTTGCACTATAAGATTAAATCTAAATTCGTAGTTTTGA
AGTATTTAACCAAATGTTGTTGATATGTACCTTAAAGGAAGAAATTCTGG
CGGAAAGAAAATTTGGCGAATTTGGCAGATTCGGCCAGAATCCGCCAAAT
TAAGTTCCCGCCAAAATTTATTTTTTTCCGCAATCCGCCAAATTAAATTC
CCGCCAAATTAAACTTTTTGAAAATATGATCTCTTTTAAGGTGTTTTTGC
ATTTTTTTTGCTGTTTTTACGCCATTTTAAGGATAACTTTTTCAGCAAAC
GCCAAATTTAGTTTTTTCGTCAATCCGCCAAATTAAATTCCCTCTAAAAA
ACTTTTTCGGCCATCCGCCAAATTAAATTCCCGCCAAAATTTCTTCCTTT
AAGGTAGGTAATTGTTGATTGTAAAACATTTGAAGAGTTTTGAATTATTT
TTCACTTATACAACAAGAACAGCTCAAATATTACAAAATTGGTTATGTTT
GAGAAAATCTTCTTCGTCGTCACATCAAACCGATTATTTTCTTTTGAAAA
AGGAATTTCTTTTGTTTTCCTATGAATTTTCTGTTCCACTGAAAAAGAGG
AATCCTTTTTTTAAAGAAAGGCCACTTTGTCATTATATCTCTGTAATTAT
TCCTAAAACTATTTATTATTTGTGTATAATATTTTTAAAAACATTTTTGC
GTTCCCTTTTTTTTTACTCCATAGTGCATGCCATCATTAGTATATTGTTA
ATATTGTTATGGAAAGTTAAAATATATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064232-exon-scaffold_41-1575043694:588710..588950 | TCONS_00064232-exon-scaffold_41-1575043694:588710..588950 | Clytia hemisphaerica | exon |
| TCONS_00064232-exon-scaffold_41-1575043694:586662..586937 | TCONS_00064232-exon-scaffold_41-1575043694:586662..586937 | Clytia hemisphaerica | exon |
| TCONS_00064232-exon-scaffold_41-1575043694:586223..586417 | TCONS_00064232-exon-scaffold_41-1575043694:586223..586417 | Clytia hemisphaerica | exon |
| TCONS_00064232-exon-scaffold_41-1575043694:584321..586082 | TCONS_00064232-exon-scaffold_41-1575043694:584321..586082 | Clytia hemisphaerica | exon |
| TCONS_00064232-exon-scaffold_41-1510915933:588710..588950 | TCONS_00064232-exon-scaffold_41-1510915933:588710..588950 | Clytia hemisphaerica | exon |
| TCONS_00064232-exon-scaffold_41-1510915933:586662..586937 | TCONS_00064232-exon-scaffold_41-1510915933:586662..586937 | Clytia hemisphaerica | exon |
| TCONS_00064232-exon-scaffold_41-1510915933:586223..586417 | TCONS_00064232-exon-scaffold_41-1510915933:586223..586417 | Clytia hemisphaerica | exon |
| TCONS_00064232-exon-scaffold_41-1510915933:584321..586082 | TCONS_00064232-exon-scaffold_41-1510915933:584321..586082 | Clytia hemisphaerica | exon |
| TCONS_00064232-exon-scaffold_41-1491911889:588710..588950 | TCONS_00064232-exon-scaffold_41-1491911889:588710..588950 | Clytia hemisphaerica | exon |
| TCONS_00064232-exon-scaffold_41-1491911889:586662..586937 | TCONS_00064232-exon-scaffold_41-1491911889:586662..586937 | Clytia hemisphaerica | exon |
| TCONS_00064232-exon-scaffold_41-1491911889:586223..586417 | TCONS_00064232-exon-scaffold_41-1491911889:586223..586417 | Clytia hemisphaerica | exon |
| TCONS_00064232-exon-scaffold_41-1491911889:584321..586082 | TCONS_00064232-exon-scaffold_41-1491911889:584321..586082 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:584321..588950 - |
Blast
The following BLAST results are available for this feature:
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